pycom04g14710

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0014994
Physical Location & Seq
Forward (+)
17522843 .. 17523790
948 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14710.2

Sequence Viewer

Length: 657 bp
ATGCCTCCCAACCCGCCCAAATCATCAGTCTTGATCCACCGTATCCACACCGCCACCTCGGCTACATCGAACACGGCGTCATCGCAGTACCAAAGCCAAAGAGAAGGAGGATCTGCTGCACTGCTACTCAACAACAATAGTAATAACAACGGTAAGAAGCGGGCCACAGTACCGGAAGCCGTGGCGCGGTACCACACGCACGCGGTGGGGCCCAACCAGTCCTGCTCCGCCGTGACTCAGGAGATCGCTGCGCCCGTGTCCACCGTGTGGTCGGTGGTGCGGCGCTTCGACAACCCGCAGGCGTACAAACACTTCGTCAAGAGCTGCCACGTCATCGAGGGCGGCGGCGACGTTGGGACGCTGCGGGAGGTGCAGGTGATATCGGGGCTGCCGGCGAACAGCAGCACGGAGAGCATGGTGGGCGGGGACCACCGGCTGTCGAACTACAGGTCGGTGACGACACTACACCCATCGTCGCGCGCGGGCGGCGGGACGGAGGTGGTGGAGTCGTACGTTGTCGACGTGCCGCTCGGGAACACAAAGGATGACACGTGTATGTTCGTGGACACCATTGTTCGCTGCAACCTGCAGTCTCTCGCTCAGACCGCCGAGGATTTAGCAAGACGCAATGCTATTACTGTGCGTGATATCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

219

Amino Acids

23.35

Weight (kDa)

8.4

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38310
fragaria_vesca FvH4_6g10740
malus_domestica MD04G1165000.v1.1 MD12G1178800.v1.1
prunus_persica Prupe.6G284000_v2.0.a1
pyrus_communis pycom04g14710 pycom12g16880
rosa_chinensis RchiOBHm_Chr3g0461781
rosa_laevigata RLG00000024899
rosa_multiflora Rmu_sc0004308.1_g000008
rosa_roxburghii Rroxscaffold_6G00417950
rosa_rugosa Rorug03G0053500
rosa_samantha Rh3BG114800 Rh3CG117100 Rh3DG116600
rosa_wichuraiana Rw3G009460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 2 cut(s) 364, 594
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 267
AccBSI CCGCTC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 519
AccII CGCG 5 cut(s) 187, 203, 478, 480, 482
AclWI GGATC 2 cut(s) 28, 118
AcvI CACGTG 1 cut(s) 552
AcyI GRCGYC 1 cut(s) 77
AdeI CACNNNGTG 2 cut(s) 205, 267
AfaI GTAC 5 cut(s) 89, 171, 191, 305, 512
AfiI CCNNNNNNNGG 2 cut(s) 186, 267
AflIII ACRYGT 2 cut(s) 549, 551
AjiI CACGTC 2 cut(s) 331, 523
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 597
AlwI GGATC 2 cut(s) 28, 118
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 2 cut(s) 162, 209
ApaI GGGCCC 1 cut(s) 213
ApeKI GCWGC 7 cut(s) 116, 248, 324, 361, 388, 402, 579
ArsI GACNNNNNNTTYG 8 cut(s) 12, 44, 62, 94, 300, 332, 434, 466
Asp718I GGTACC 1 cut(s) 189
AspLEI GCGC 5 cut(s) 187, 253, 285, 480, 482
AspS9I GGNCC 4 cut(s) 162, 209, 210, 427
AsuHPI GGTGA 2 cut(s) 388, 466
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 427
BaeGI GKGCMC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 1 cut(s) 213
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbrPI CACGTG 1 cut(s) 552
BbvI GCAGC 7 cut(s) 103, 235, 311, 348, 375, 414, 566
BccI CCATC 1 cut(s) 478
BceAI ACGGC 3 cut(s) 90, 164, 215
BciVI GTATCC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 597
BfmI CTRYAG 2 cut(s) 445, 587
BfoI RGCGCY 1 cut(s) 286
BfuAI ACCTGC 2 cut(s) 364, 594
BfuI GTATCC 1 cut(s) 53
BglI GCCNNNNNGGC 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 530
BmgBI CACGTC 2 cut(s) 331, 523
BmgT120I GGNCC 4 cut(s) 162, 209, 210, 427
BmiI GGNNCC 4 cut(s) 191, 210, 211, 428
BsaAI YACGTR 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 57, 180, 609
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 267
Bse118I RCCGGY 2 cut(s) 391, 432
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 634
BseDI CCNNGG 3 cut(s) 57, 180, 609
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 2 cut(s) 186, 267
BseMI GCAATG 1 cut(s) 634
BseMII CTCAG 2 cut(s) 251, 614
BseNI ACTGG 1 cut(s) 217
BsePI GCGCGC 1 cut(s) 478
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 7 cut(s) 103, 235, 311, 348, 375, 414, 566
BsgI GTGCAG 2 cut(s) 102, 392
Bsh1236I CGCG 5 cut(s) 187, 203, 478, 480, 482
BshFI GGCC 2 cut(s) 164, 211
BshNI GGYRCC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 3 cut(s) 173, 392, 433
BsiWI CGTACG 1 cut(s) 510
BslFI GGGAC 3 cut(s) 370, 440, 505
BslI CCNNNNNNNGG 2 cut(s) 186, 267
BsmAI GTCTC 1 cut(s) 597
BsmFI GGGAC 3 cut(s) 370, 440, 505
BsnI GGCC 2 cut(s) 164, 211
BsoBI CYCGRG 1 cut(s) 530
Bsp120I GGGCCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 3 cut(s) 33, 110, 243
BspANI GGCC 2 cut(s) 164, 211
BspCNI CTCAG 2 cut(s) 250, 613
BspFNI CGCG 5 cut(s) 187, 203, 478, 480, 482
BspLI GGNNCC 4 cut(s) 191, 210, 211, 428
BspMAI CTGCAG 1 cut(s) 591
BspMI ACCTGC 2 cut(s) 364, 594
BspPI GGATC 2 cut(s) 28, 118
BspT107I GGYRCC 1 cut(s) 189
BsrBI CCGCTC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 634
BsrFI RCCGGY 2 cut(s) 391, 432
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 2 cut(s) 391, 432
BssECI CCNNGG 3 cut(s) 57, 180, 609
BssHII GCGCGC 1 cut(s) 478
BssMI GATC 3 cut(s) 33, 110, 243
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 5 cut(s) 41, 152, 169, 265, 640
BstACI GRCGYC 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 552
BstC8I GCNNGC 6 cut(s) 162, 201, 300, 393, 480, 484
BstDEI CTNAG 2 cut(s) 237, 600
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 5 cut(s) 187, 203, 478, 480, 482
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 5 cut(s) 187, 253, 285, 480, 482
BstKTI GATC 3 cut(s) 36, 113, 246
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 3 cut(s) 33, 110, 243
BstMWI GCNNNNNNNGC 6 cut(s) 59, 370, 411, 420, 486, 605
BstSFI CTRYAG 2 cut(s) 445, 587
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 5 cut(s) 187, 203, 478, 480, 482
BstV1I GCAGC 7 cut(s) 103, 235, 311, 348, 375, 414, 566
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuI GTATCC 1 cut(s) 53
BsuRI GGCC 2 cut(s) 164, 211
BtgI CCRYGG 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 66
BtrI CACGTC 2 cut(s) 331, 523
BtsCI GGATG 1 cut(s) 550
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 119
BveI ACCTGC 2 cut(s) 364, 594
Cac8I GCNNGC 6 cut(s) 162, 201, 300, 393, 480, 484
CfoI GCGC 5 cut(s) 187, 253, 285, 480, 482
Cfr10I RCCGGY 2 cut(s) 391, 432
Cfr13I GGNCC 4 cut(s) 162, 209, 210, 427
CseI GACGC 3 cut(s) 66, 367, 633
Csp6I GTAC 5 cut(s) 88, 170, 190, 304, 511
CviAII CATG 1 cut(s) 415
CviJI RGCY 8 cut(s) 62, 96, 164, 179, 211, 324, 388, 436
CviKI_1 RGCY 8 cut(s) 62, 96, 164, 179, 211, 324, 388, 436
CviQI GTAC 5 cut(s) 88, 170, 190, 304, 511
DdeI CTNAG 2 cut(s) 237, 600
DpnI GATC 3 cut(s) 35, 112, 245
DpnII GATC 3 cut(s) 33, 110, 243
DraIII CACNNNGTG 2 cut(s) 205, 267
EciI GGCGGA 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 213
Eco32I GATATC 2 cut(s) 381, 649
Eco47I GGWCC 1 cut(s) 427
Eco72I CACGTG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 209
EcoRV GATATC 2 cut(s) 381, 649
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 1 cut(s) 418
FaiI YATR 2 cut(s) 416, 557
FaqI GGGAC 3 cut(s) 370, 440, 505
FatI CATG 1 cut(s) 414
FauI CCCGC 7 cut(s) 21, 153, 303, 357, 416, 475, 482
FblI GTMKAC 1 cut(s) 519
FokI GGATG 1 cut(s) 557
FriOI GRGCYC 1 cut(s) 213
GlaI GCGC 5 cut(s) 186, 252, 284, 479, 481
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 2 cut(s) 164, 211
HapII CCGG 3 cut(s) 173, 392, 433
HgaI GACGC 3 cut(s) 66, 367, 633
HhaI GCGC 5 cut(s) 187, 253, 285, 480, 482
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 1 cut(s) 418
Hin6I GCGC 5 cut(s) 185, 251, 283, 478, 480
HinP1I GCGC 5 cut(s) 185, 251, 283, 478, 480
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 2 cut(s) 235, 506
HpaII CCGG 3 cut(s) 173, 392, 433
HphI GGTGA 2 cut(s) 388, 466
Hpy166II GTNNAC 3 cut(s) 261, 520, 565
Hpy188I TCNGA 1 cut(s) 603
Hpy188III TCNNGA 4 cut(s) 31, 239, 319, 532
Hpy8I GTNNAC 3 cut(s) 261, 520, 565
Hpy99I CGWCG 3 cut(s) 353, 478, 524
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 5 cut(s) 41, 152, 169, 265, 640
HpyCH4IV ACGT 5 cut(s) 330, 351, 513, 522, 551
HpyCH4V TGCA 4 cut(s) 119, 373, 582, 589
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 370, 411, 420, 486, 605
HpyF3I CTNAG 2 cut(s) 237, 600
HpySE526I ACGT 5 cut(s) 330, 351, 513, 522, 551
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 418
HspAI GCGC 5 cut(s) 185, 251, 283, 478, 480
KpnI GGTACC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 3 cut(s) 33, 110, 243
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 7 cut(s) 103, 235, 311, 348, 375, 414, 566
MaeII ACGT 5 cut(s) 330, 351, 513, 522, 551
MaeIII GTNAC 2 cut(s) 232, 454
MalI GATC 3 cut(s) 35, 112, 245
MauBI CGCGCGCG 1 cut(s) 478
MbiI CCGCTC 1 cut(s) 529
MboI GATC 3 cut(s) 33, 110, 243
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 213
MlyI GAGTC 2 cut(s) 229, 515
MnlI CCTC 7 cut(s) 15, 67, 101, 331, 361, 490, 604
MroNI GCCGGC 1 cut(s) 391
MseI TTAA 1 cut(s) 655
MslI CAYNNNNRTG 1 cut(s) 554
MspI CCGG 3 cut(s) 173, 392, 433
MvnI CGCG 5 cut(s) 187, 203, 478, 480, 482
MwoI GCNNNNNNNGC 6 cut(s) 59, 370, 411, 420, 486, 605
NaeI GCCGGC 1 cut(s) 393
NdeII GATC 3 cut(s) 33, 110, 243
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 1 cut(s) 418
NlaIV GGNNCC 4 cut(s) 191, 210, 211, 428
NmeAIII GCCGAG 2 cut(s) 38, 634
NmuCI GTSAC 2 cut(s) 232, 454
PaqCI CACCTGC 1 cut(s) 364
PauI GCGCGC 1 cut(s) 478
PcsI WCGNNNNNNNCGW 4 cut(s) 65, 74, 252, 519
PdiI GCCGGC 1 cut(s) 393
Pfl23II CGTACG 1 cut(s) 510
PflMI CCANNNNNTGG 1 cut(s) 267
PleI GAGTC 2 cut(s) 229, 514
PmaCI CACGTG 1 cut(s) 552
PmlI CACGTG 1 cut(s) 552
PpsI GAGTC 2 cut(s) 229, 514
Ppu21I YACGTR 1 cut(s) 552
PspCI CACGTG 1 cut(s) 552
PspLI CGTACG 1 cut(s) 510
PspN4I GGNNCC 4 cut(s) 191, 210, 211, 428
PspOMI GGGCCC 1 cut(s) 209
PspPI GGNCC 4 cut(s) 162, 209, 210, 427
PstI CTGCAG 1 cut(s) 591
PsuI RGATCY 1 cut(s) 110
PteI GCGCGC 1 cut(s) 478
RsaI GTAC 5 cut(s) 89, 171, 191, 305, 512
RsaNI GTAC 5 cut(s) 88, 170, 190, 304, 511
RseI CAYNNNNRTG 1 cut(s) 554
SalI GTCGAC 1 cut(s) 518
SaqAI TTAA 1 cut(s) 655
Sau3AI GATC 3 cut(s) 33, 110, 243
Sau96I GGNCC 4 cut(s) 162, 209, 210, 427
SchI GAGTC 2 cut(s) 229, 515
SduI GDGCHC 1 cut(s) 213
SfcI CTRYAG 2 cut(s) 445, 587
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 554
TaaI ACNGT 5 cut(s) 41, 152, 169, 265, 640
TaiI ACGT 5 cut(s) 333, 354, 516, 525, 554
TaqI TCGA 5 cut(s) 68, 288, 336, 440, 519
TauI GCSGC 5 cut(s) 283, 345, 348, 489, 529
Tru1I TTAA 1 cut(s) 655
Tru9I TTAA 1 cut(s) 655
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 2 cut(s) 232, 454
TseI GCWGC 7 cut(s) 116, 248, 324, 361, 388, 402, 579
Tsp45I GTSAC 2 cut(s) 232, 454
TspGWI ACGGA 2 cut(s) 422, 509
TspRI CASTG 1 cut(s) 126
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.