MD12G1178800.v1.1

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0014994
Physical Location & Seq
Forward (+)
25923202 .. 25925351
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1178800.v1.1.491

Sequence Viewer

Length: 732 bp
ATGCCCCCCAACCCGCCCAAATCCTCAGTCTTGCTCCACCGTGTCCACACCGCCACGTCGGCGACATCCAATATGGCGTCGTCGCAGTACCAAAACCAAAGAGGCGGAGGAGCTGCTGCACTGCTACTCAACAACAATAGTAATAATAATAGTAAGAAGCGGGCCACAGTACCAGAAGTGGTGGCGGGGCACCACACGCATGCGGTGGGTCCTAACCAGTGCTGCTCCGCCGTGACTAAAGAGATCGCTGCGCCCGTGTCCACCGTGTGGTCGGTGGTGCGGCGCTTCGATAACCCGCAGGCGTACAAGCACTTCGTCAAGAGCTGCCACGTCATCGCGGGTGGCGGCGACGTGGGGTCGCTGCGGGAGGTGCAGGTGATATCGGGGCTGCCTGCGAACAACAGCACGGAGAGGCTGGAGATTCTTGACGACGAGAGCCACGTCATCAGCTTCAGCATGGTTGGCGGGGACCATCGGCTGTCGAACTACAGGTCGGTGACGACGCTGCACCCGTCGTCGCGCGCAGGCGGCGGAACGGTGGTGGTGGAGTCGTACGTGGTGGACGTGCCGCACGGGAACACAAGGGATGACACGTGTATTTTCGTGGACACCATTGTTCGTTGCAACCTGCAGTCACTCGCTCAGATCGCCGAGGATATAGCTAGCAAGACGCAAGAGGACACGAAAGAACATCAAAAATGGAAAGGCAGACAATCCTTGTCCAATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

244

Amino Acids

26.15

Weight (kDa)

8.3

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 77 - 218 2.6e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38310
fragaria_vesca FvH4_6g10740
malus_domestica MD04G1165000.v1.1 MD12G1178800.v1.1
prunus_persica Prupe.6G284000_v2.0.a1
pyrus_communis pycom04g14710 pycom12g16880
rosa_chinensis RchiOBHm_Chr3g0461781
rosa_laevigata RLG00000024899
rosa_multiflora Rmu_sc0004308.1_g000008
rosa_roxburghii Rroxscaffold_6G00417950
rosa_rugosa Rorug03G0053500
rosa_samantha Rh3BG114800 Rh3CG117100 Rh3DG116600
rosa_wichuraiana Rw3G009460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 730
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 2 cut(s) 364, 636
AccB1I GGYRCC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 267
AccII CGCG 3 cut(s) 338, 520, 522
AcuI CTGAAG 1 cut(s) 436
AcvI CACGTG 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 267
AfaI GTAC 4 cut(s) 89, 171, 305, 554
AfiI CCNNNNNNNGG 1 cut(s) 267
AflIII ACRYGT 2 cut(s) 591, 593
AhdI GACNNNNNGTC 1 cut(s) 355
AjiI CACGTC 5 cut(s) 57, 331, 352, 442, 565
AluBI AGCT 4 cut(s) 113, 324, 450, 662
AluI AGCT 4 cut(s) 113, 324, 450, 662
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 8 cut(s) 113, 116, 222, 248, 324, 361, 388, 505
ArsI GACNNNNNNTTYG 4 cut(s) 12, 44, 476, 508
AspLEI GCGC 4 cut(s) 253, 285, 522, 524
AspS9I GGNCC 3 cut(s) 162, 209, 469
AsuHPI GGTGA 2 cut(s) 388, 508
AsuNHI GCTAGC 1 cut(s) 662
AvaII GGWCC 2 cut(s) 209, 469
BaeGI GKGCMC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbrPI CACGTG 1 cut(s) 594
BbvI GCAGC 8 cut(s) 100, 103, 209, 235, 311, 348, 375, 492
BccI CCATC 1 cut(s) 480
BceAI ACGGC 1 cut(s) 215
BfaI CTAG 1 cut(s) 663
BfmI CTRYAG 2 cut(s) 487, 629
BfoI RGCGCY 1 cut(s) 286
BfuAI ACCTGC 2 cut(s) 364, 636
BglI GCCNNNNNGGC 1 cut(s) 59
Bme18I GGWCC 2 cut(s) 209, 469
BmeRI GACNNNNNGTC 1 cut(s) 355
BmgBI CACGTC 5 cut(s) 57, 331, 352, 442, 565
BmgT120I GGNCC 3 cut(s) 162, 209, 469
BmiI GGNNCC 3 cut(s) 191, 210, 470
BmtI GCTAGC 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 437
BsaAI YACGTR 2 cut(s) 556, 594
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 651
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 2 cut(s) 65, 592
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 39, 656
BseNI ACTGG 1 cut(s) 217
BsePI GCGCGC 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 8 cut(s) 100, 103, 209, 235, 311, 348, 375, 492
BsgI GTGCAG 3 cut(s) 102, 392, 491
Bsh1236I CGCG 3 cut(s) 338, 520, 522
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 189
BsiWI CGTACG 1 cut(s) 552
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 243, 645
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 38, 655
BspFNI CGCG 3 cut(s) 338, 520, 522
BspLI GGNNCC 3 cut(s) 191, 210, 470
BspMAI CTGCAG 1 cut(s) 633
BspMI ACCTGC 2 cut(s) 364, 636
BspOI GCTAGC 1 cut(s) 666
BspT107I GGYRCC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 651
BssHII GCGCGC 1 cut(s) 520
BssMI GATC 2 cut(s) 243, 645
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 4 cut(s) 41, 169, 265, 538
BstACI GRCGYC 1 cut(s) 77
BstBAI YACGTR 2 cut(s) 556, 594
BstC8I GCNNGC 7 cut(s) 162, 201, 300, 393, 522, 526, 664
BstDEI CTNAG 2 cut(s) 25, 642
BstF5I GGATG 2 cut(s) 65, 592
BstFNI CGCG 3 cut(s) 338, 520, 522
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 4 cut(s) 253, 285, 522, 524
BstKTI GATC 2 cut(s) 246, 648
BstMBI GATC 2 cut(s) 243, 645
BstMWI GCNNNNNNNGC 6 cut(s) 59, 196, 370, 462, 528, 647
BstNSI RCATGY 1 cut(s) 203
BstSFI CTRYAG 2 cut(s) 487, 629
BstSLI GKGCMC 1 cut(s) 192
BstUI CGCG 3 cut(s) 338, 520, 522
BstV1I GCAGC 8 cut(s) 100, 103, 209, 235, 311, 348, 375, 492
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 319
BtrI CACGTC 5 cut(s) 57, 331, 352, 442, 565
BtsCI GGATG 2 cut(s) 65, 592
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 2 cut(s) 119, 224
BveI ACCTGC 2 cut(s) 364, 636
Cac8I GCNNGC 7 cut(s) 162, 201, 300, 393, 522, 526, 664
CfoI GCGC 4 cut(s) 253, 285, 522, 524
Cfr13I GGNCC 3 cut(s) 162, 209, 469
CseI GACGC 3 cut(s) 66, 511, 679
Csp6I GTAC 4 cut(s) 88, 170, 304, 553
CviAII CATG 2 cut(s) 200, 457
CviJI RGCY 9 cut(s) 113, 164, 324, 388, 415, 438, 450, 478, 662
CviKI_1 RGCY 9 cut(s) 113, 164, 324, 388, 415, 438, 450, 478, 662
CviQI GTAC 4 cut(s) 88, 170, 304, 553
DdeI CTNAG 2 cut(s) 25, 642
DpnI GATC 2 cut(s) 245, 647
DpnII GATC 2 cut(s) 243, 645
DraIII CACNNNGTG 1 cut(s) 267
DriI GACNNNNNGTC 1 cut(s) 355
Eam1105I GACNNNNNGTC 1 cut(s) 355
EciI GGCGGA 3 cut(s) 120, 217, 546
Eco32I GATATC 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 209, 469
Eco57I CTGAAG 1 cut(s) 436
Eco72I CACGTG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 209
EcoRV GATATC 1 cut(s) 381
FaeI CATG 2 cut(s) 203, 460
FaiI YATR 5 cut(s) 74, 201, 458, 659, 730
FaqI GGGAC 1 cut(s) 482
FatI CATG 2 cut(s) 199, 456
FauI CCCGC 7 cut(s) 21, 153, 178, 303, 331, 357, 458
FokI GGATG 2 cut(s) 52, 599
FspBI CTAG 1 cut(s) 663
GlaI GCGC 4 cut(s) 252, 284, 521, 523
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 1 cut(s) 164
HgaI GACGC 3 cut(s) 66, 511, 679
HhaI GCGC 4 cut(s) 253, 285, 522, 524
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 2 cut(s) 203, 460
Hin6I GCGC 4 cut(s) 251, 283, 520, 522
HinP1I GCGC 4 cut(s) 251, 283, 520, 522
HinfI GANTC 2 cut(s) 421, 548
HphI GGTGA 2 cut(s) 388, 508
Hpy166II GTNNAC 4 cut(s) 46, 261, 562, 607
Hpy188I TCNGA 1 cut(s) 645
Hpy188III TCNNGA 2 cut(s) 319, 425
Hpy8I GTNNAC 4 cut(s) 46, 261, 562, 607
Hpy99I CGWCG 8 cut(s) 61, 82, 85, 353, 434, 505, 517, 520
HpyCH4III ACNGT 4 cut(s) 41, 169, 265, 538
HpyCH4IV ACGT 7 cut(s) 56, 330, 351, 441, 555, 564, 593
HpyCH4V TGCA 5 cut(s) 119, 373, 508, 624, 631
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 196, 370, 462, 528, 647
HpyF3I CTNAG 2 cut(s) 25, 642
HpySE526I ACGT 7 cut(s) 56, 330, 351, 441, 555, 564, 593
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 2 cut(s) 203, 460
HspAI GCGC 4 cut(s) 251, 283, 520, 522
Kzo9I GATC 2 cut(s) 243, 645
LmnI GCTCC 3 cut(s) 39, 110, 230
LpnPI CCDG 9 cut(s) 186, 230, 284, 359, 401, 405, 475, 510, 641
Lsp1109I GCAGC 8 cut(s) 100, 103, 209, 235, 311, 348, 375, 492
MaeI CTAG 1 cut(s) 663
MaeII ACGT 7 cut(s) 56, 330, 351, 441, 555, 564, 593
MaeIII GTNAC 3 cut(s) 232, 496, 633
MalI GATC 2 cut(s) 245, 647
MboI GATC 2 cut(s) 243, 645
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 724
MlyI GAGTC 1 cut(s) 557
MnlI CCTC 7 cut(s) 34, 95, 101, 361, 405, 646, 670
MslI CAYNNNNRTG 1 cut(s) 198
MvnI CGCG 3 cut(s) 338, 520, 522
MwoI GCNNNNNNNGC 6 cut(s) 59, 196, 370, 462, 528, 647
NdeII GATC 2 cut(s) 243, 645
NheI GCTAGC 1 cut(s) 662
NlaIII CATG 2 cut(s) 203, 460
NlaIV GGNNCC 3 cut(s) 191, 210, 470
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 3 cut(s) 232, 496, 633
NspI RCATGY 1 cut(s) 203
PaeI GCATGC 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 364
PauI GCGCGC 1 cut(s) 520
PcsI WCGNNNNNNNCGW 4 cut(s) 252, 438, 509, 561
PfeI GAWTC 1 cut(s) 421
Pfl23II CGTACG 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 267
PleI GAGTC 1 cut(s) 556
PmaCI CACGTG 1 cut(s) 594
PmlI CACGTG 1 cut(s) 594
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 2 cut(s) 556, 594
PpuMI RGGWCCY 1 cut(s) 209
PsiI TTATAA 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 209
PspCI CACGTG 1 cut(s) 594
PspLI CGTACG 1 cut(s) 552
PspN4I GGNNCC 3 cut(s) 191, 210, 470
PspPI GGNCC 3 cut(s) 162, 209, 469
PspPPI RGGWCCY 1 cut(s) 209
PstI CTGCAG 1 cut(s) 633
PteI GCGCGC 1 cut(s) 520
RsaI GTAC 4 cut(s) 89, 171, 305, 554
RsaNI GTAC 4 cut(s) 88, 170, 304, 553
RseI CAYNNNNRTG 1 cut(s) 198
Sau3AI GATC 2 cut(s) 243, 645
Sau96I GGNCC 3 cut(s) 162, 209, 469
SchI GAGTC 1 cut(s) 557
SduI GDGCHC 1 cut(s) 192
SfcI CTRYAG 2 cut(s) 487, 629
SinI GGWCC 2 cut(s) 209, 469
SmiMI CAYNNNNRTG 1 cut(s) 198
SphI GCATGC 1 cut(s) 203
Sse9I AATT 1 cut(s) 724
SspMI CTAG 1 cut(s) 663
TaaI ACNGT 4 cut(s) 41, 169, 265, 538
TaiI ACGT 7 cut(s) 59, 333, 354, 444, 558, 567, 596
TaqI TCGA 2 cut(s) 288, 482
TasI AATT 1 cut(s) 724
TauI GCSGC 4 cut(s) 283, 348, 531, 571
TfiI GAWTC 1 cut(s) 421
TscAI CASTG 2 cut(s) 126, 224
TseFI GTSAC 3 cut(s) 232, 496, 633
TseI GCWGC 8 cut(s) 113, 116, 222, 248, 324, 361, 388, 505
Tsp45I GTSAC 3 cut(s) 232, 496, 633
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 2 cut(s) 126, 224
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 209, 469
XceI RCATGY 1 cut(s) 203
XspI CTAG 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.