Rh3BG114800

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0014994
Physical Location & Seq
Reverse (-)
9468074 .. 9469799
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG114800.1

Sequence Viewer

Length: 651 bp
ATGCCTCCCAACCCGCCCAAGTCTTCTATATCGTTCCACCGCGTCAACACAGCGCCCAACACGGCGTCCCCGCACCAGAACCAGAAGGGCATGATGATCAGGAAGCAGCGCGCCCCGATCCCCGACGCGGTGGCGCGTTACCACACGCACGGGCTCGGCCCAGACAAGTGCTGCTCCGCCGTGACGCAGGAGATCGCTGCTCCCGTCTCCACCGTGTGGTCGGTGGTCCGGCGCTTCGACAACCCCCAAGCCTACAAGCACTTCGTCAAGAGCTGCCACGTCATCGTCGGGGACGGCGACGTCGGCACGCTTCGCGAGGTCCAGGTCATCTCGGGGCTTCCGGCCAACAGCAGCACGGAGAGGCTGGACGTGCTGGACGAGGAGAGCCACGTCATCAGCTTCAGCATGGTGGGCGGCGACCACAGGCTGTCGAACTACAAGTCGGTGACTACGCTTCATCCGTCACCCGCGGGCGGCGGAGGCACGGTGGTTGTGGAGTCTTACGTGGTGGACGTGCCGCCAGGAAACACCAAGGACGACACGTGTAACTTTGTGGACACTATCGTACGGTGCAACCTGCAGTCGCTGGCTCAGATCGCCGAGAATCTTGCGAGACGTAACAACAAGTCGTCGTCGGCGTGCCCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

216

Amino Acids

23.29

Weight (kDa)

8.55

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 60 - 201 1.2e-20 Polyketide cyclase / dehydrase and lipid transport
Bet_v_1 PF00407 82 - 164 5.4e-06 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38310
fragaria_vesca FvH4_6g10740
malus_domestica MD04G1165000.v1.1 MD12G1178800.v1.1
prunus_persica Prupe.6G284000_v2.0.a1
pyrus_communis pycom04g14710 pycom12g16880
rosa_chinensis RchiOBHm_Chr3g0461781
rosa_laevigata RLG00000024899
rosa_multiflora Rmu_sc0004308.1_g000008
rosa_roxburghii Rroxscaffold_6G00417950
rosa_rugosa Rorug03G0053500
rosa_samantha Rh3BG114800 Rh3CG117100 Rh3DG116600
rosa_wichuraiana Rw3G009460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AatII GACGTC 1 cut(s) 303
Acc36I ACCTGC 1 cut(s) 585
AccB7I CCANNNNNTGG 1 cut(s) 216
AccII CGCG 6 cut(s) 42, 111, 128, 136, 315, 470
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 385
AcvI CACGTG 1 cut(s) 543
AcyI GRCGYC 2 cut(s) 65, 300
AdeI CACNNNGTG 1 cut(s) 216
AfaI GTAC 1 cut(s) 567
AfiI CCNNNNNNNGG 3 cut(s) 127, 216, 473
AflIII ACRYGT 2 cut(s) 540, 542
AjiI CACGTC 4 cut(s) 280, 370, 391, 514
AjnI CCWGG 2 cut(s) 321, 520
AluBI AGCT 2 cut(s) 273, 399
AluI AGCT 2 cut(s) 273, 399
Alw26I GTCTC 2 cut(s) 211, 607
AlwI GGATC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 586
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 2 cut(s) 157, 342
ApeKI GCWGC 5 cut(s) 106, 171, 197, 273, 351
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AspLEI GCGC 5 cut(s) 55, 111, 113, 136, 234
AspS9I GGNCC 3 cut(s) 158, 226, 319
AsuHPI GGTGA 2 cut(s) 456, 457
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 2 cut(s) 226, 319
BaeGI GKGCMC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 156
BbrPI CACGTG 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 5 cut(s) 118, 158, 184, 260, 363
BceAI ACGGC 3 cut(s) 78, 164, 310
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 2 cut(s) 323, 522
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 211, 607
BfmI CTRYAG 1 cut(s) 578
BfoI RGCGCY 2 cut(s) 56, 235
BfuAI ACCTGC 1 cut(s) 585
BisI GCNGC 8 cut(s) 107, 172, 198, 274, 352, 415, 475, 518
BlsI GCNGC 8 cut(s) 108, 173, 199, 275, 353, 416, 476, 519
Bme1390I CCNGG 2 cut(s) 323, 522
Bme18I GGWCC 2 cut(s) 226, 319
BmeT110I CYCGRG 1 cut(s) 331
BmgBI CACGTC 4 cut(s) 280, 370, 391, 514
BmgT120I GGNCC 3 cut(s) 158, 226, 319
BmrFI CCNGG 2 cut(s) 323, 522
BpiI GAAGAC 1 cut(s) 15
BsaAI YACGTR 2 cut(s) 505, 543
BsaHI GRCGYC 2 cut(s) 65, 300
BsaJI CCNNGG 2 cut(s) 468, 531
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 216, 473
BseBI CCWGG 2 cut(s) 323, 522
BseDI CCNNGG 2 cut(s) 468, 531
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 3 cut(s) 127, 216, 473
BseMII CTCAG 1 cut(s) 605
BsePI GCGCGC 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 644
BseXI GCAGC 5 cut(s) 118, 158, 184, 260, 363
Bsh1236I CGCG 6 cut(s) 42, 111, 128, 136, 315, 470
BshFI GGCC 2 cut(s) 159, 344
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 2 cut(s) 229, 341
BsiWI CGTACG 1 cut(s) 565
BslFI GGGAC 2 cut(s) 52, 305
BslI CCNNNNNNNGG 3 cut(s) 127, 216, 473
BsmAI GTCTC 2 cut(s) 211, 607
BsmBI CGTCTC 2 cut(s) 211, 607
BsmFI GGGAC 2 cut(s) 52, 305
BsnI GGCC 2 cut(s) 159, 344
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 156, 644
Bsp143I GATC 4 cut(s) 96, 117, 192, 594
Bsp68I TCGCGA 1 cut(s) 315
BspANI GGCC 2 cut(s) 159, 344
BspCNI CTCAG 1 cut(s) 604
BspFNI CGCG 6 cut(s) 42, 111, 128, 136, 315, 470
BspMAI CTGCAG 1 cut(s) 582
BspMI ACCTGC 1 cut(s) 585
BspPI GGATC 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 468, 531
BssHII GCGCGC 1 cut(s) 109
BssMI GATC 4 cut(s) 96, 117, 192, 594
BssNI GRCGYC 2 cut(s) 65, 300
BssT1I CCWWGG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 323, 522
Bst4CI ACNGT 3 cut(s) 214, 487, 570
BstACI GRCGYC 2 cut(s) 65, 300
BstBAI YACGTR 2 cut(s) 505, 543
BstC8I GCNNGC 5 cut(s) 111, 308, 472, 588, 640
BstDEI CTNAG 1 cut(s) 591
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 6 cut(s) 42, 111, 128, 136, 315, 470
BstH2I RGCGCY 2 cut(s) 56, 235
BstHHI GCGC 5 cut(s) 55, 111, 113, 136, 234
BstKTI GATC 4 cut(s) 99, 120, 195, 597
BstMAI GTCTC 2 cut(s) 211, 607
BstMBI GATC 4 cut(s) 96, 117, 192, 594
BstMWI GCNNNNNNNGC 6 cut(s) 303, 312, 370, 411, 480, 596
BstNI CCWGG 2 cut(s) 323, 522
BstSCI CCNGG 2 cut(s) 321, 520
BstSFI CTRYAG 1 cut(s) 578
BstSLI GKGCMC 1 cut(s) 644
BstUI CGCG 6 cut(s) 42, 111, 128, 136, 315, 470
BstV1I GCAGC 5 cut(s) 118, 158, 184, 260, 363
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 159, 344
BtgI CCRYGG 1 cut(s) 468
BtrI CACGTC 4 cut(s) 280, 370, 391, 514
BtsCI GGATG 1 cut(s) 457
BtuMI TCGCGA 1 cut(s) 315
BveI ACCTGC 1 cut(s) 585
Cac8I GCNNGC 5 cut(s) 111, 308, 472, 588, 640
CaiI CAGNNNCTG 1 cut(s) 586
CfoI GCGC 5 cut(s) 55, 111, 113, 136, 234
Cfr13I GGNCC 3 cut(s) 158, 226, 319
Cfr42I CCGCGG 1 cut(s) 471
CseI GACGC 4 cut(s) 31, 54, 134, 193
Csp6I GTAC 1 cut(s) 566
CviAII CATG 2 cut(s) 91, 406
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 1 cut(s) 591
DpnI GATC 4 cut(s) 98, 119, 194, 596
DpnII GATC 4 cut(s) 96, 117, 192, 594
DraIII CACNNNGTG 1 cut(s) 216
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 342
EciI GGCGGA 2 cut(s) 166, 492
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 226, 319
Eco57I CTGAAG 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 321, 520
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 531
Esp3I CGTCTC 2 cut(s) 211, 607
FaeI CATG 2 cut(s) 94, 409
FaiI YATR 3 cut(s) 29, 92, 407
FaqI GGGAC 2 cut(s) 52, 305
FatI CATG 2 cut(s) 90, 405
FauI CCCGC 4 cut(s) 21, 78, 463, 475
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 8 cut(s) 107, 172, 198, 274, 352, 415, 475, 518
FokI GGATG 1 cut(s) 444
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 8 cut(s) 107, 172, 198, 274, 352, 415, 475, 518
GlaI GCGC 5 cut(s) 54, 110, 112, 135, 233
GluI GCNGC 8 cut(s) 107, 172, 198, 274, 352, 415, 475, 518
HaeII RGCGCY 2 cut(s) 56, 235
HaeIII GGCC 2 cut(s) 159, 344
HapII CCGG 2 cut(s) 229, 341
HgaI GACGC 4 cut(s) 31, 54, 134, 193
HhaI GCGC 5 cut(s) 55, 111, 113, 136, 234
Hin1I GRCGYC 2 cut(s) 65, 300
Hin1II CATG 2 cut(s) 94, 409
Hin6I GCGC 5 cut(s) 53, 109, 111, 134, 232
HinP1I GCGC 5 cut(s) 53, 109, 111, 134, 232
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 2 cut(s) 497, 604
HpaII CCGG 2 cut(s) 229, 341
HphI GGTGA 2 cut(s) 456, 457
Hpy166II GTNNAC 3 cut(s) 46, 511, 556
Hpy188I TCNGA 1 cut(s) 594
Hpy188III TCNNGA 3 cut(s) 100, 268, 314
Hpy8I GTNNAC 3 cut(s) 46, 511, 556
Hpy99I CGWCG 6 cut(s) 128, 290, 302, 305, 634, 637
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 3 cut(s) 214, 487, 570
HpyCH4IV ACGT 8 cut(s) 279, 300, 369, 390, 504, 513, 542, 616
HpyCH4V TGCA 2 cut(s) 573, 580
HpyF10VI GCNNNNNNNGC 6 cut(s) 303, 312, 370, 411, 480, 596
HpyF3I CTNAG 1 cut(s) 591
HpySE526I ACGT 8 cut(s) 279, 300, 369, 390, 504, 513, 542, 616
Hsp92I GRCGYC 2 cut(s) 65, 300
Hsp92II CATG 2 cut(s) 94, 409
HspAI GCGC 5 cut(s) 53, 109, 111, 134, 232
Ksp22I TGATCA 1 cut(s) 96
KspI CCGCGG 1 cut(s) 471
Kzo9I GATC 4 cut(s) 96, 117, 192, 594
LmnI GCTCC 2 cut(s) 179, 205
Lsp1109I GCAGC 5 cut(s) 118, 158, 184, 260, 363
MaeII ACGT 8 cut(s) 279, 300, 369, 390, 504, 513, 542, 616
MaeIII GTNAC 6 cut(s) 137, 181, 445, 462, 545, 617
MalI GATC 4 cut(s) 98, 119, 194, 596
MboI GATC 4 cut(s) 96, 117, 192, 594
MboII GAAGA 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 156, 644
MlyI GAGTC 1 cut(s) 506
MnlI CCTC 5 cut(s) 15, 310, 354, 373, 473
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 2 cut(s) 229, 341
MspR9I CCNGG 2 cut(s) 323, 522
MvaI CCWGG 2 cut(s) 323, 522
MvnI CGCG 6 cut(s) 42, 111, 128, 136, 315, 470
MwoI GCNNNNNNNGC 6 cut(s) 303, 312, 370, 411, 480, 596
NdeII GATC 4 cut(s) 96, 117, 192, 594
NlaIII CATG 2 cut(s) 94, 409
NmeAIII GCCGAG 2 cut(s) 135, 625
NmuCI GTSAC 3 cut(s) 181, 445, 462
NruI TCGCGA 1 cut(s) 315
PauI GCGCGC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 6 cut(s) 201, 294, 375, 458, 510, 635
PfeI GAWTC 1 cut(s) 604
Pfl23II CGTACG 1 cut(s) 565
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 8 cut(s) 108, 173, 199, 275, 353, 416, 476, 519
PleI GAGTC 1 cut(s) 505
PmaCI CACGTG 1 cut(s) 543
PmlI CACGTG 1 cut(s) 543
PpsI GAGTC 1 cut(s) 505
Ppu21I YACGTR 2 cut(s) 505, 543
Psp6I CCWGG 2 cut(s) 321, 520
PspCI CACGTG 1 cut(s) 543
PspGI CCWGG 2 cut(s) 321, 520
PspLI CGTACG 1 cut(s) 565
PspPI GGNCC 3 cut(s) 158, 226, 319
PstI CTGCAG 1 cut(s) 582
PstNI CAGNNNCTG 1 cut(s) 586
PteI GCGCGC 1 cut(s) 109
RruI TCGCGA 1 cut(s) 315
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
SacII CCGCGG 1 cut(s) 471
SatI GCNGC 8 cut(s) 107, 172, 198, 274, 352, 415, 475, 518
Sau3AI GATC 4 cut(s) 96, 117, 192, 594
Sau96I GGNCC 3 cut(s) 158, 226, 319
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 323, 522
SduI GDGCHC 2 cut(s) 156, 644
SfcI CTRYAG 1 cut(s) 578
Sfr303I CCGCGG 1 cut(s) 471
SgrBI CCGCGG 1 cut(s) 471
SinI GGWCC 2 cut(s) 226, 319
StyD4I CCNGG 2 cut(s) 321, 520
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 3 cut(s) 214, 487, 570
TaiI ACGT 8 cut(s) 282, 303, 372, 393, 507, 516, 545, 619
TaqI TCGA 2 cut(s) 237, 431
TauI GCSGC 3 cut(s) 417, 477, 520
TfiI GAWTC 1 cut(s) 604
TseFI GTSAC 3 cut(s) 181, 445, 462
TseI GCWGC 5 cut(s) 106, 171, 197, 273, 351
Tsp45I GTSAC 3 cut(s) 181, 445, 462
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 2 cut(s) 371, 450
Van91I CCANNNNNTGG 1 cut(s) 216
VpaK11BI GGWCC 2 cut(s) 226, 319
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.