FvH4_6g10740

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014994
Physical Location & Seq
Reverse (-)
6448145 .. 6449795
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10740.t1

Sequence Viewer

Length: 657 bp
ATGCCTCCCAACCCACCCAAGTCTTCTGTATTGTGTCACCGCCTCAACACCGCCCCCAACACCTCGTCTAACAACCAGAAGAACAACATGATGATCAAGAAGCAGCAGCAGCAGCGCGCCCCGATCCCAGAAGCGGTGGCGCGTTACCACACGCATGGAGTCGGCCCTAACAAGTGCTGCTCCGCCGTGACGCAGGAGATCGCTGCTCCCGTCTCCACAGTCTGGTCCGTCGTCCGCCGCTTCGATAATCCCCAAGCCTACAAGCACTTCGTGAAAAGCTGCCACGTTATCGTCGGCGACGGCGACGTTGGTACCCTCCGCGAGGTTCAGGTCATCTCGGGGCTTCCAGCCAACAACAGCACTGAGAGGCTGGACGTGCTGGACGACGAGAGCCATGTCATCAGCTTCAGCATGGTCGGCGGCGACCACAGGCTGTCAAACTACAAGTCCGTGACGACGCTTCACCCGTCACCTTCGGGTAACGGAGGCACGGTGGTTGTGGAGTCTTACGTGGTGGACGTGCCGCCGGGGAACACTAAGGAAGACACGTGTAACTTCGTGGACACCATCGTCCGGTGCAACCTGCAGTCGCTGGCTCAGATCGCAGAGAATCTAGCGAGACGTAACAACAAGTCGTCTTCGGCGTGCCCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

219

Amino Acids

23.67

Weight (kDa)

8.7

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 62 - 203 2.6e-20 Polyketide cyclase / dehydrase and lipid transport
Bet_v_1 PF00407 84 - 166 9.4e-06 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38310
fragaria_vesca FvH4_6g10740
malus_domestica MD04G1165000.v1.1 MD12G1178800.v1.1
prunus_persica Prupe.6G284000_v2.0.a1
pyrus_communis pycom04g14710 pycom12g16880
rosa_chinensis RchiOBHm_Chr3g0461781
rosa_laevigata RLG00000024899
rosa_multiflora Rmu_sc0004308.1_g000008
rosa_roxburghii Rroxscaffold_6G00417950
rosa_rugosa Rorug03G0053500
rosa_samantha Rh3BG114800 Rh3CG117100 Rh3DG116600
rosa_wichuraiana Rw3G009460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 569
Acc36I ACCTGC 1 cut(s) 591
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 222
AccII CGCG 3 cut(s) 117, 142, 321
AciI CCGC 9 cut(s) 40, 51, 134, 183, 235, 238, 319, 420, 524
AclWI GGATC 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 391
AcvI CACGTG 1 cut(s) 549
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 4 cut(s) 133, 222, 322, 573
AflIII ACRYGT 2 cut(s) 546, 548
AjiI CACGTC 2 cut(s) 376, 520
AluBI AGCT 2 cut(s) 279, 405
AluI AGCT 2 cut(s) 279, 405
Alw26I GTCTC 2 cut(s) 217, 613
AlwI GGATC 1 cut(s) 118
AlwNI CAGNNNCTG 1 cut(s) 592
Ama87I CYCGRG 1 cut(s) 337
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 7 cut(s) 103, 106, 109, 112, 177, 203, 279
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
Asp718I GGTACC 1 cut(s) 311
AspLEI GCGC 3 cut(s) 117, 119, 142
AspS9I GGNCC 2 cut(s) 164, 225
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 3 cut(s) 29, 455, 462
AvaI CYCGRG 1 cut(s) 337
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 650
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BanI GGYRCC 1 cut(s) 311
BbrPI CACGTG 1 cut(s) 549
BbsI GAAGAC 3 cut(s) 15, 549, 630
BbvI GCAGC 7 cut(s) 115, 118, 121, 124, 164, 190, 266
BccI CCATC 1 cut(s) 575
BceAI ACGGC 2 cut(s) 170, 316
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 217, 613
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 584
BfuAI ACCTGC 1 cut(s) 591
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 337
BmgBI CACGTC 2 cut(s) 376, 520
BmgT120I GGNCC 2 cut(s) 164, 225
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 528
BpiI GAAGAC 3 cut(s) 15, 549, 630
BpuMI CCSGG 1 cut(s) 528
BsaAI YACGTR 2 cut(s) 511, 549
BsaJI CCNNGG 1 cut(s) 527
BsaWI WCCGGW 1 cut(s) 573
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 222, 322, 573
BseDI CCNNGG 1 cut(s) 527
BseLI CCNNNNNNNGG 4 cut(s) 133, 222, 322, 573
BseMII CTCAG 2 cut(s) 354, 611
BsePI GCGCGC 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 650
BseXI GCAGC 7 cut(s) 115, 118, 121, 124, 164, 190, 266
Bsh1236I CGCG 3 cut(s) 117, 142, 321
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 2 cut(s) 527, 574
BslI CCNNNNNNNGG 4 cut(s) 133, 222, 322, 573
BsmAI GTCTC 2 cut(s) 217, 613
BsmBI CGTCTC 2 cut(s) 217, 613
BsnI GGCC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 650
Bsp143I GATC 4 cut(s) 93, 123, 198, 600
BspACI CCGC 9 cut(s) 40, 51, 134, 183, 235, 238, 319, 420, 524
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 355, 610
BspFNI CGCG 3 cut(s) 117, 142, 321
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 588
BspMI ACCTGC 1 cut(s) 591
BspPI GGATC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 527
BssHII GCGCGC 1 cut(s) 115
BssMI GATC 4 cut(s) 93, 123, 198, 600
Bst4CI ACNGT 2 cut(s) 220, 493
BstBAI YACGTR 2 cut(s) 511, 549
BstC8I GCNNGC 3 cut(s) 117, 594, 646
BstDEI CTNAG 3 cut(s) 363, 537, 597
BstENI CCTNNNNNAGG 1 cut(s) 320
BstFNI CGCG 3 cut(s) 117, 142, 321
BstHHI GCGC 3 cut(s) 117, 119, 142
BstKTI GATC 4 cut(s) 96, 126, 201, 603
BstMAI GTCTC 2 cut(s) 217, 613
BstMBI GATC 4 cut(s) 93, 123, 198, 600
BstMWI GCNNNNNNNGC 5 cut(s) 109, 112, 376, 417, 602
BstSCI CCNGG 1 cut(s) 526
BstSFI CTRYAG 1 cut(s) 584
BstSLI GKGCMC 1 cut(s) 650
BstUI CGCG 3 cut(s) 117, 142, 321
BstV1I GCAGC 7 cut(s) 115, 118, 121, 124, 164, 190, 266
BstV2I GAAGAC 3 cut(s) 15, 549, 630
BstXI CCANNNNNNTGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 165
BtrI CACGTC 2 cut(s) 376, 520
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 3 cut(s) 117, 594, 646
CaiI CAGNNNCTG 1 cut(s) 592
CfoI GCGC 3 cut(s) 117, 119, 142
Cfr13I GGNCC 2 cut(s) 164, 225
CseI GACGC 2 cut(s) 199, 466
Csp6I GTAC 1 cut(s) 312
CviAII CATG 4 cut(s) 88, 155, 395, 412
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 3 cut(s) 363, 537, 597
DpnI GATC 4 cut(s) 95, 125, 200, 602
DpnII GATC 4 cut(s) 93, 123, 198, 600
DraIII CACNNNGTG 1 cut(s) 271
DrdI GACNNNNNNGTC 1 cut(s) 569
DseDI GACNNNNNNGTC 1 cut(s) 569
EciI GGCGGA 2 cut(s) 172, 224
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 391
Eco72I CACGTG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 320
Esp3I CGTCTC 2 cut(s) 217, 613
FaeI CATG 4 cut(s) 91, 158, 398, 415
FaiI YATR 4 cut(s) 89, 156, 396, 413
FatI CATG 4 cut(s) 87, 154, 394, 411
FbaI TGATCA 1 cut(s) 93
FspBI CTAG 1 cut(s) 614
GlaI GCGC 3 cut(s) 116, 118, 141
HaeIII GGCC 1 cut(s) 165
HapII CCGG 2 cut(s) 527, 574
HgaI GACGC 2 cut(s) 199, 466
HhaI GCGC 3 cut(s) 117, 119, 142
Hin1II CATG 4 cut(s) 91, 158, 398, 415
Hin6I GCGC 3 cut(s) 115, 117, 140
HinP1I GCGC 3 cut(s) 115, 117, 140
HinfI GANTC 3 cut(s) 159, 503, 610
HpaII CCGG 2 cut(s) 527, 574
HphI GGTGA 3 cut(s) 29, 455, 462
Hpy166II GTNNAC 2 cut(s) 517, 562
Hpy188I TCNGA 1 cut(s) 600
Hpy188III TCNNGA 2 cut(s) 97, 271
Hpy8I GTNNAC 2 cut(s) 517, 562
Hpy99I CGWCG 6 cut(s) 233, 296, 302, 308, 389, 460
HpyAV CCTTC 1 cut(s) 483
HpyCH4III ACNGT 2 cut(s) 220, 493
HpyCH4IV ACGT 7 cut(s) 285, 306, 375, 510, 519, 548, 622
HpyCH4V TGCA 2 cut(s) 579, 586
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 112, 376, 417, 602
HpyF3I CTNAG 3 cut(s) 363, 537, 597
HpySE526I ACGT 7 cut(s) 285, 306, 375, 510, 519, 548, 622
Hsp92II CATG 4 cut(s) 91, 158, 398, 415
HspAI GCGC 3 cut(s) 115, 117, 140
KpnI GGTACC 1 cut(s) 315
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 4 cut(s) 93, 123, 198, 600
LmnI GCTCC 2 cut(s) 185, 211
Lsp1109I GCAGC 7 cut(s) 115, 118, 121, 124, 164, 190, 266
MaeI CTAG 1 cut(s) 614
MaeII ACGT 7 cut(s) 285, 306, 375, 510, 519, 548, 622
MaeIII GTNAC 8 cut(s) 35, 143, 187, 451, 468, 479, 551, 623
MalI GATC 4 cut(s) 95, 125, 200, 602
MboI GATC 4 cut(s) 93, 123, 198, 600
MboII GAAGA 4 cut(s) 15, 91, 554, 630
MhlI GDGCHC 1 cut(s) 650
MlyI GAGTC 2 cut(s) 168, 512
MnlI CCTC 7 cut(s) 15, 53, 73, 316, 326, 360, 479
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 2 cut(s) 527, 574
MspR9I CCNGG 1 cut(s) 528
MvnI CGCG 3 cut(s) 117, 142, 321
MwoI GCNNNNNNNGC 5 cut(s) 109, 112, 376, 417, 602
NciI CCSGG 1 cut(s) 528
NdeII GATC 4 cut(s) 93, 123, 198, 600
NlaIII CATG 4 cut(s) 91, 158, 398, 415
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 4 cut(s) 35, 187, 451, 468
PauI GCGCGC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 6 cut(s) 207, 300, 381, 464, 516, 641
PfeI GAWTC 1 cut(s) 610
PflMI CCANNNNNTGG 1 cut(s) 222
PleI GAGTC 2 cut(s) 167, 511
PmaCI CACGTG 1 cut(s) 549
PmlI CACGTG 1 cut(s) 549
PpsI GAGTC 2 cut(s) 167, 511
Ppu21I YACGTR 2 cut(s) 511, 549
PspCI CACGTG 1 cut(s) 549
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 2 cut(s) 164, 225
PstI CTGCAG 1 cut(s) 588
PstNI CAGNNNCTG 1 cut(s) 592
PteI GCGCGC 1 cut(s) 115
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 153
Sau3AI GATC 4 cut(s) 93, 123, 198, 600
Sau96I GGNCC 2 cut(s) 164, 225
SchI GAGTC 2 cut(s) 168, 512
ScrFI CCNGG 1 cut(s) 528
SduI GDGCHC 1 cut(s) 650
SfcI CTRYAG 1 cut(s) 584
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 153
SsiI CCGC 9 cut(s) 40, 51, 134, 183, 235, 238, 319, 420, 524
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 526
TaaI ACNGT 2 cut(s) 220, 493
TaiI ACGT 7 cut(s) 288, 309, 378, 513, 522, 551, 625
TaqI TCGA 1 cut(s) 243
TauI GCSGC 3 cut(s) 240, 423, 526
TfiI GAWTC 1 cut(s) 610
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 4 cut(s) 35, 187, 451, 468
TseI GCWGC 7 cut(s) 103, 106, 109, 112, 177, 203, 279
Tsp45I GTSAC 4 cut(s) 35, 187, 451, 468
TspGWI ACGGA 3 cut(s) 217, 439, 498
TspRI CASTG 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 225
XagI CCTNNNNNAGG 1 cut(s) 320
XspI CTAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.