pycom12g16880

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0014994
Physical Location & Seq
Forward (+)
19165260 .. 19165958
699 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16880.1

Sequence Viewer

Length: 699 bp
ATGCCTCCCAACCCGCCCAAATCCTCAGTCTTGCTCCACCGTGTCCACACCGCCACGTCGGCGACATCAAACATGGCGTCGTCGCAGTACCAAAACCAAAGAGGCGGAGGAGCTGCTGCACTGCTACTCAACAACAATAGTAATAATAATAGTAAGAGGCGGACCACAGTACCAGAAGTGGTGGCGCGGCACCACACGCATGCGGTGGGTCCTAACCAGTGCTGCTCGGCCGTGACTCAAGAGATCGCTGCGCCCGTGTCCACCGTGTGGTCGGTGGTGCGGCGCTTCGATAACCCGCAGGCGTACAAGCACTTCGTCAAGAGCTGCCACGTCGTCGCGGGCGGCGGCGACGTGGGGTCGCTGCGGGAGGTGCAGGTGATATCGGGGCTGCCTGCGAACAACAGCATGGAGAGGCTGGAGATCCTTGACGATGAGAGCCACGTCATCAGCTTCAGCATGGTTGGCGGGGACCATCGGCTGTCGAACTACAGGTCAGTGACGACGCTGCACCCGTCGTCGCGCGCAGGCGGCGGAACGGTGGTGGTGGAGTCGTATGTGGTGGACGTGCCGCACGGGAACACAAAGGATGAGACGTGTATTTTCGTGGACACCATTGTTCGTTGCAACCTGCAGTCACTCGCTAAGATCGCCGAGGATATAGCTAGCAAGACGCAAGTAATGATGATAGTAATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

233

Amino Acids

24.95

Weight (kDa)

8.32

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 77 - 218 1.2e-18 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38310
fragaria_vesca FvH4_6g10740
malus_domestica MD04G1165000.v1.1 MD12G1178800.v1.1
prunus_persica Prupe.6G284000_v2.0.a1
pyrus_communis pycom04g14710 pycom12g16880
rosa_chinensis RchiOBHm_Chr3g0461781
rosa_laevigata RLG00000024899
rosa_multiflora Rmu_sc0004308.1_g000008
rosa_roxburghii Rroxscaffold_6G00417950
rosa_rugosa Rorug03G0053500
rosa_samantha Rh3BG114800 Rh3CG117100 Rh3DG116600
rosa_wichuraiana Rw3G009460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 2 cut(s) 364, 636
AccB1I GGYRCC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 267
AccII CGCG 4 cut(s) 187, 338, 520, 522
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 436
AcyI GRCGYC 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 267
AfaI GTAC 3 cut(s) 89, 171, 305
AfiI CCNNNNNNNGG 1 cut(s) 267
AflIII ACRYGT 1 cut(s) 593
AhdI GACNNNNNGTC 1 cut(s) 355
AjiI CACGTC 6 cut(s) 57, 331, 352, 442, 565, 594
AluBI AGCT 4 cut(s) 113, 324, 450, 662
AluI AGCT 4 cut(s) 113, 324, 450, 662
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 1 cut(s) 415
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 8 cut(s) 113, 116, 222, 248, 324, 361, 388, 505
ArsI GACNNNNNNTTYG 6 cut(s) 12, 44, 62, 94, 476, 508
AspLEI GCGC 5 cut(s) 187, 253, 285, 522, 524
AspS9I GGNCC 3 cut(s) 162, 209, 469
AsuHPI GGTGA 1 cut(s) 388
AsuNHI GCTAGC 1 cut(s) 662
AvaII GGWCC 3 cut(s) 162, 209, 469
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BanI GGYRCC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbvI GCAGC 8 cut(s) 100, 103, 209, 235, 311, 348, 375, 492
BccI CCATC 1 cut(s) 480
BceAI ACGGC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 1 cut(s) 663
BfmI CTRYAG 2 cut(s) 487, 629
BfoI RGCGCY 1 cut(s) 286
BfuAI ACCTGC 2 cut(s) 364, 636
BglI GCCNNNNNGGC 1 cut(s) 59
Bme18I GGWCC 3 cut(s) 162, 209, 469
BmeRI GACNNNNNGTC 1 cut(s) 355
BmgBI CACGTC 6 cut(s) 57, 331, 352, 442, 565, 594
BmgT120I GGNCC 3 cut(s) 162, 209, 469
BmiI GGNNCC 3 cut(s) 191, 210, 470
BmtI GCTAGC 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 651
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 689
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 1 cut(s) 592
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 217
BsePI GCGCGC 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 123
BseX3I CGGCCG 1 cut(s) 228
BseXI GCAGC 8 cut(s) 100, 103, 209, 235, 311, 348, 375, 492
BsgI GTGCAG 3 cut(s) 102, 392, 491
Bsh1236I CGCG 4 cut(s) 187, 338, 520, 522
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 189
BsiEI CGRYCG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 584
BsmBI CGTCTC 1 cut(s) 584
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 1 cut(s) 230
Bsp143I GATC 3 cut(s) 243, 420, 645
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 38
BspFNI CGCG 4 cut(s) 187, 338, 520, 522
BspLI GGNNCC 3 cut(s) 191, 210, 470
BspMAI CTGCAG 1 cut(s) 633
BspMI ACCTGC 2 cut(s) 364, 636
BspOI GCTAGC 1 cut(s) 666
BspPI GGATC 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 651
BssHII GCGCGC 1 cut(s) 520
BssMI GATC 3 cut(s) 243, 420, 645
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 4 cut(s) 41, 169, 265, 538
BstACI GRCGYC 1 cut(s) 77
BstC8I GCNNGC 7 cut(s) 201, 300, 340, 393, 522, 526, 664
BstDEI CTNAG 2 cut(s) 25, 642
BstF5I GGATG 1 cut(s) 592
BstFNI CGCG 4 cut(s) 187, 338, 520, 522
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 5 cut(s) 187, 253, 285, 522, 524
BstKTI GATC 3 cut(s) 246, 423, 648
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 3 cut(s) 243, 420, 645
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 6 cut(s) 59, 196, 370, 462, 528, 647
BstNSI RCATGY 1 cut(s) 203
BstSFI CTRYAG 2 cut(s) 487, 629
BstUI CGCG 4 cut(s) 187, 338, 520, 522
BstV1I GCAGC 8 cut(s) 100, 103, 209, 235, 311, 348, 375, 492
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BstZI CGGCCG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 230
BtrI CACGTC 6 cut(s) 57, 331, 352, 442, 565, 594
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 3 cut(s) 119, 224, 501
BveI ACCTGC 2 cut(s) 364, 636
Cac8I GCNNGC 7 cut(s) 201, 300, 340, 393, 522, 526, 664
CfoI GCGC 5 cut(s) 187, 253, 285, 522, 524
Cfr13I GGNCC 3 cut(s) 162, 209, 469
CseI GACGC 3 cut(s) 66, 511, 679
Csp6I GTAC 3 cut(s) 88, 170, 304
CviAII CATG 4 cut(s) 73, 200, 406, 457
CviJI RGCY 9 cut(s) 113, 230, 324, 388, 415, 438, 450, 478, 662
CviKI_1 RGCY 9 cut(s) 113, 230, 324, 388, 415, 438, 450, 478, 662
CviQI GTAC 3 cut(s) 88, 170, 304
DdeI CTNAG 2 cut(s) 25, 642
DpnI GATC 3 cut(s) 245, 422, 647
DpnII GATC 3 cut(s) 243, 420, 645
DraIII CACNNNGTG 1 cut(s) 267
DriI GACNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 228
EagI CGGCCG 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 355
EciI GGCGGA 3 cut(s) 120, 175, 546
EclXI CGGCCG 1 cut(s) 228
Eco32I GATATC 1 cut(s) 381
Eco47I GGWCC 3 cut(s) 162, 209, 469
Eco52I CGGCCG 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 209
EcoRV GATATC 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 584
FaeI CATG 4 cut(s) 76, 203, 409, 460
FaiI YATR 6 cut(s) 74, 201, 407, 458, 555, 659
FaqI GGGAC 1 cut(s) 482
FatI CATG 4 cut(s) 72, 199, 405, 456
FauI CCCGC 5 cut(s) 21, 303, 331, 357, 458
FokI GGATG 1 cut(s) 599
FspBI CTAG 1 cut(s) 663
GlaI GCGC 5 cut(s) 186, 252, 284, 521, 523
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 1 cut(s) 230
HgaI GACGC 3 cut(s) 66, 511, 679
HhaI GCGC 5 cut(s) 187, 253, 285, 522, 524
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 4 cut(s) 76, 203, 409, 460
Hin6I GCGC 5 cut(s) 185, 251, 283, 520, 522
HinP1I GCGC 5 cut(s) 185, 251, 283, 520, 522
HinfI GANTC 2 cut(s) 235, 548
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 4 cut(s) 46, 261, 562, 607
Hpy188III TCNNGA 2 cut(s) 239, 319
Hpy8I GTNNAC 4 cut(s) 46, 261, 562, 607
Hpy99I CGWCG 9 cut(s) 61, 82, 85, 335, 338, 353, 505, 517, 520
HpyCH4III ACNGT 4 cut(s) 41, 169, 265, 538
HpyCH4IV ACGT 6 cut(s) 56, 330, 351, 441, 564, 593
HpyCH4V TGCA 5 cut(s) 119, 373, 508, 624, 631
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 196, 370, 462, 528, 647
HpyF3I CTNAG 2 cut(s) 25, 642
HpySE526I ACGT 6 cut(s) 56, 330, 351, 441, 564, 593
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 4 cut(s) 76, 203, 409, 460
HspAI GCGC 5 cut(s) 185, 251, 283, 520, 522
Kzo9I GATC 3 cut(s) 243, 420, 645
LmnI GCTCC 2 cut(s) 39, 110
LpnPI CCDG 9 cut(s) 186, 230, 284, 359, 401, 405, 475, 510, 641
Lsp1109I GCAGC 8 cut(s) 100, 103, 209, 235, 311, 348, 375, 492
MaeI CTAG 1 cut(s) 663
MaeII ACGT 6 cut(s) 56, 330, 351, 441, 564, 593
MaeIII GTNAC 3 cut(s) 232, 496, 633
MalI GATC 3 cut(s) 245, 422, 647
MboI GATC 3 cut(s) 243, 420, 645
MflI RGATCY 1 cut(s) 420
MlyI GAGTC 2 cut(s) 229, 557
MnlI CCTC 8 cut(s) 15, 34, 95, 101, 150, 361, 405, 646
MseI TTAA 1 cut(s) 697
MslI CAYNNNNRTG 1 cut(s) 198
MvnI CGCG 4 cut(s) 187, 338, 520, 522
MwoI GCNNNNNNNGC 6 cut(s) 59, 196, 370, 462, 528, 647
NdeII GATC 3 cut(s) 243, 420, 645
NheI GCTAGC 1 cut(s) 662
NlaIII CATG 4 cut(s) 76, 203, 409, 460
NlaIV GGNNCC 3 cut(s) 191, 210, 470
NmeAIII GCCGAG 2 cut(s) 206, 676
NmuCI GTSAC 3 cut(s) 232, 496, 633
NspI RCATGY 1 cut(s) 203
PaeI GCATGC 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 364
PauI GCGCGC 1 cut(s) 520
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 509
PflMI CCANNNNNTGG 1 cut(s) 267
PleI GAGTC 2 cut(s) 229, 556
PpsI GAGTC 2 cut(s) 229, 556
PpuMI RGGWCCY 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 209
PspN4I GGNNCC 3 cut(s) 191, 210, 470
PspPI GGNCC 3 cut(s) 162, 209, 469
PspPPI RGGWCCY 1 cut(s) 209
PstI CTGCAG 1 cut(s) 633
PsuI RGATCY 1 cut(s) 420
PteI GCGCGC 1 cut(s) 520
RsaI GTAC 3 cut(s) 89, 171, 305
RsaNI GTAC 3 cut(s) 88, 170, 304
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 697
Sau3AI GATC 3 cut(s) 243, 420, 645
Sau96I GGNCC 3 cut(s) 162, 209, 469
SchI GAGTC 2 cut(s) 229, 557
SfcI CTRYAG 2 cut(s) 487, 629
SinI GGWCC 3 cut(s) 162, 209, 469
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
SphI GCATGC 1 cut(s) 203
SspMI CTAG 1 cut(s) 663
TaaI ACNGT 4 cut(s) 41, 169, 265, 538
TaiI ACGT 6 cut(s) 59, 333, 354, 444, 567, 596
TaqI TCGA 2 cut(s) 288, 482
TauI GCSGC 6 cut(s) 190, 283, 345, 348, 531, 571
Tru1I TTAA 1 cut(s) 697
Tru9I TTAA 1 cut(s) 697
TscAI CASTG 3 cut(s) 126, 224, 501
TseFI GTSAC 3 cut(s) 232, 496, 633
TseI GCWGC 8 cut(s) 113, 116, 222, 248, 324, 361, 388, 505
Tsp45I GTSAC 3 cut(s) 232, 496, 633
TspRI CASTG 3 cut(s) 126, 224, 501
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 3 cut(s) 162, 209, 469
XceI RCATGY 1 cut(s) 203
XspI CTAG 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.