Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010132

Physical Location & Seq

Genomic Coordinates Forward (+)

16200944 .. 16202669

Gene Structure 1726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCCACCATTAGAGTACCAAACGAAGTTCCTTCTCCAGCTCAGGATTCTGAAACTCTCAAACAAGCTATTCGCGGATGGGGAACAGATGAGAAGGCGATTATACGAGTTTTAGGGCAAAGAGACCAGAGCCAGAGAAGGAAGATTAGAGAAAGTTTTAGAGAGATTTATGGCAAAGATCTTATCGATGTTCTATCCTCCGAACTGTCTGGTGATTTCATGAAAGCTGTGGTTTCGTGGACGTATGATCCAGCAGAGAGAGACGCAAGGCTTGTGAACAAGATTTTGAACAAGGAGAAGAAGAAGAAAAGCTTAGAGAATTTGAAGGTTATAGTAGAGATCTCTTGCACGACTTCCCCAAACCATTTGATTGCTGTGAGGAAAGCTTATTGTTCACTCTTTGACTCTTCTCTTGAAGAACACATTGCTTCTTCTCTGCCTTTTCCTCTTGCAAAGTTACTGGTGACATTGGCAAGTACATTCAGATATGACAAAGATAGGACTGATGCAGAAGTAGCTACTATTGAGGCGGCTATGCTACGTGAAGCCATAGAGAAGAAACAATTAGATCATGACCATGTCCTGTACATATTAGGAACGCGTAGTATCTATCAGCTCAGAGAAACTTTTGTTGCTTACAAGAAGAATTATGGGGTCACAATTGATAAGGATGTTGATGGATGTCCAGGAGATGCTGATCTGAGAAGTCTATTGAAGGTGGCAATCTTTTGTATTGATACTCCTGAGAAACACTTTGCAAAGGTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACGAGGGCGATTGTGACGCGTGCAGAGATCGATTTGATGAAAGTAAGAGGAGAGTATTTCAACATGTATAATACAAGCATGGACAATGCTATTACTGGTGATATTTCTGGAGACTACAAGGACTTCATTATCACCTTACTTGGATCCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

321

Amino Acids

36.26

Weight (kDa)

6.05

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	15 - 80	3.7e-23	Annexin
Annexin	PF00191	177 - 237	3.2e-12	Annexin
Annexin	PF00191	252 - 316	9e-18	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38760
fragaria_vesca	FvH4_7g02633 FvH4_7g02633 FvH4_7g02633 FvH4_7g02633
malus_domestica	MD02G1291300.v1.1 MD07G1035300.v1.1
prunus_persica	Prupe.2G031700_v2.0.a1
pyrus_communis	pycom02g24620
rosa_chinensis	RchiOBHm_Chr1g0321331
rosa_laevigata	RLG00000030428
rosa_multiflora	Rmu_sc0000724.1_g000005 Rmu_sc0000960.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433960 Rroxscaffold_4G00327820
rosa_rugosa	Rorug01G0032300
rosa_samantha	Rh1AG044300 Rh1BG042000 Rh1CG047000 Rh1DG051500
rosa_wichuraiana	Rw1G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	75, 601, 829
AciI	CCGC	2 cut(s)	75, 530
AclWI	GGATC	3 cut(s)	242, 948, 961
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	3 cut(s)	18, 478, 587
AflIII	ACRYGT	3 cut(s)	599, 827, 873
AgsI	TTSAA	5 cut(s)	289, 325, 416, 715, 871
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	7 cut(s)	41, 68, 227, 312, 386, 518, 616
AluI	AGCT	7 cut(s)	41, 68, 227, 312, 386, 518, 616
Alw26I	GTCTC	3 cut(s)	117, 255, 915
AlwI	GGATC	3 cut(s)	242, 948, 961
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	319
AsuHPI	GGTGA	4 cut(s)	224, 475, 920, 934
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	953
BccI	CCATC	2 cut(s)	72, 671
BciT130I	CCWGG	1 cut(s)	687
BcoDI	GTCTC	3 cut(s)	117, 255, 915
BglII	AGATCT	2 cut(s)	178, 339
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	687
BmiI	GGNNCC	1 cut(s)	955
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	2 cut(s)	496, 682
BpmI	CTGGAG	2 cut(s)	21, 939
Bpu10I	CCTNAGC	1 cut(s)	42
Bsa29I	ATCGAT	2 cut(s)	186, 840
BsaAI	YACGTR	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	465, 910
Bse3DI	GCAATG	1 cut(s)	423
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	687
BseCI	ATCGAT	2 cut(s)	186, 840
BseGI	GGATG	3 cut(s)	83, 676, 686
BseJI	GATNNNNATC	1 cut(s)	696
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	4 cut(s)	56, 631, 692, 735
BseNI	ACTGG	2 cut(s)	465, 910
BseRI	GAGGAG	1 cut(s)	873
BsgI	GTGCAG	1 cut(s)	852
Bsh1236I	CGCG	3 cut(s)	75, 601, 829
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	2 cut(s)	186, 840
BsmAI	GTCTC	3 cut(s)	117, 255, 915
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	7 cut(s)	178, 247, 339, 568, 697, 837, 953
BspACI	CCGC	2 cut(s)	75, 530
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	55, 630, 693, 736
BspDI	ATCGAT	2 cut(s)	186, 840
BspFNI	CGCG	3 cut(s)	75, 601, 829
BspHI	TCATGA	2 cut(s)	219, 571
BspLI	GGNNCC	1 cut(s)	955
BspPI	GGATC	3 cut(s)	242, 948, 961
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	423
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	2 cut(s)	465, 910
BssMI	GATC	7 cut(s)	178, 247, 339, 568, 697, 837, 953
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	585
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	5 cut(s)	42, 313, 617, 701, 744
BstF5I	GGATG	3 cut(s)	83, 676, 686
BstFNI	CGCG	3 cut(s)	75, 601, 829
BstKTI	GATC	7 cut(s)	181, 250, 342, 571, 700, 840, 956
BstMAI	GTCTC	3 cut(s)	117, 255, 915
BstMBI	GATC	7 cut(s)	178, 247, 339, 568, 697, 837, 953
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	1 cut(s)	685
BstUI	CGCG	3 cut(s)	75, 601, 829
BstX2I	RGATCY	3 cut(s)	178, 339, 953
BstYI	RGATCY	3 cut(s)	178, 339, 953
Bsu15I	ATCGAT	2 cut(s)	186, 840
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	2 cut(s)	186, 840
BtsCI	GGATG	3 cut(s)	83, 676, 686
Cac8I	GCNNGC	1 cut(s)	831
CciI	TCATGA	2 cut(s)	219, 571
ClaI	ATCGAT	2 cut(s)	186, 840
CseI	GACGC	2 cut(s)	272, 835
Csp6I	GTAC	3 cut(s)	17, 477, 586
CviAII	CATG	5 cut(s)	220, 572, 578, 874, 889
CviQI	GTAC	3 cut(s)	17, 477, 586
DdeI	CTNAG	5 cut(s)	42, 313, 617, 701, 744
DpnI	GATC	7 cut(s)	180, 249, 341, 570, 699, 839, 955
DpnII	GATC	7 cut(s)	178, 247, 339, 568, 697, 837, 953
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	685
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	5 cut(s)	223, 575, 581, 877, 892
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	5 cut(s)	219, 571, 577, 873, 888
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	3 cut(s)	90, 683, 693
Fsp4HI	GCNGC	1 cut(s)	531
GluI	GCNGC	1 cut(s)	531
GsuI	CTGGAG	2 cut(s)	21, 939
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	2 cut(s)	272, 835
Hin1II	CATG	5 cut(s)	223, 575, 581, 877, 892
HincII	GTYRAC	1 cut(s)	810
HindII	GTYRAC	1 cut(s)	810
HindIII	AAGCTT	2 cut(s)	310, 384
HinfI	GANTC	4 cut(s)	47, 404, 773, 803
HphI	GGTGA	4 cut(s)	224, 475, 920, 934
Hpy166II	GTNNAC	4 cut(s)	240, 277, 395, 810
Hpy188I	TCNGA	6 cut(s)	52, 202, 485, 620, 702, 965
Hpy188III	TCNNGA	6 cut(s)	44, 220, 413, 572, 743, 918
Hpy8I	GTNNAC	4 cut(s)	240, 277, 395, 810
HpyAV	CCTTC	5 cut(s)	42, 88, 132, 319, 709
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	2 cut(s)	242, 541
HpyCH4V	TGCA	5 cut(s)	348, 452, 509, 758, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	5 cut(s)	42, 313, 617, 701, 744
HpySE526I	ACGT	2 cut(s)	242, 541
Hsp92II	CATG	5 cut(s)	223, 575, 581, 877, 892
Kzo9I	GATC	7 cut(s)	178, 247, 339, 568, 697, 837, 953
LweI	GCATC	2 cut(s)	496, 682
MaeII	ACGT	2 cut(s)	242, 541
MaeIII	GTNAC	4 cut(s)	456, 463, 655, 823
MalI	GATC	7 cut(s)	180, 249, 341, 570, 699, 839, 955
MboI	GATC	7 cut(s)	178, 247, 339, 568, 697, 837, 953
MboII	GAAGA	9 cut(s)	154, 310, 313, 316, 399, 423, 428, 568, 655
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	3 cut(s)	178, 339, 953
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	319, 563, 646, 660
MluI	ACGCGT	2 cut(s)	599, 827
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	8 cut(s)	208, 372, 456, 520, 775, 793, 807, 851
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	687
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	1 cut(s)	687
MvnI	CGCG	3 cut(s)	75, 601, 829
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeII	GATC	7 cut(s)	178, 247, 339, 568, 697, 837, 953
NlaIII	CATG	5 cut(s)	223, 575, 581, 877, 892
NlaIV	GGNNCC	1 cut(s)	955
NmuCI	GTSAC	3 cut(s)	463, 655, 823
NspI	RCATGY	1 cut(s)	877
PagI	TCATGA	2 cut(s)	219, 571
PciI	ACATGT	1 cut(s)	873
PfeI	GAWTC	3 cut(s)	47, 773, 803
PflFI	GACNNNGTC	1 cut(s)	578
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	1 cut(s)	532
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	542
PscI	ACATGT	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	1 cut(s)	955
PsuI	RGATCY	3 cut(s)	178, 339, 953
PsyI	GACNNNGTC	1 cut(s)	578
RsaI	GTAC	3 cut(s)	18, 478, 587
RsaNI	GTAC	3 cut(s)	17, 477, 586
RseI	CAYNNNNRTG	1 cut(s)	576
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	7 cut(s)	178, 247, 339, 568, 697, 837, 953
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	687
SfaNI	GCATC	2 cut(s)	496, 682
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	4 cut(s)	319, 563, 646, 660
SsiI	CCGC	2 cut(s)	75, 530
StyD4I	CCNGG	1 cut(s)	685
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	2 cut(s)	245, 544
TaqI	TCGA	3 cut(s)	186, 776, 840
TasI	AATT	4 cut(s)	319, 563, 646, 660
TatI	WGTACW	2 cut(s)	476, 585
TauI	GCSGC	1 cut(s)	533
TfiI	GAWTC	3 cut(s)	47, 773, 803
TseFI	GTSAC	3 cut(s)	463, 655, 823
Tsp45I	GTSAC	3 cut(s)	463, 655, 823
TspDTI	ATGAA	4 cut(s)	208, 236, 863, 925
Tth111I	GACNNNGTC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.