Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010132

Physical Location & Seq

Genomic Coordinates Reverse (-)

8815727 .. 8820106

Gene Structure 4380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGCGGTCTCAGAGTACCAGAAGCTGTTCCTTCTCCAGAAGAAGACTGTGAGAGACTCAATAAAGCCTTTGAAGGATTTGGAACGGACGAGGAGGCTGTGATATGGATACTTGGACATAGGAATGCAAGCCAAAGGAGAAAAATCAGAGACACTTACCAACAGCTTTACAATAAGTCCCTCATTGATGCTCTCCAGTCTGAACTCTCTGGAGATTTCAGAGATGCAGTAATTTTGTGGACATATGATCCTCCTGAAAGGGATGCTAAAGTGGCAAGAGATGCACTAATGAAGAAGAAGAAAGGAATAAAACACCTGAAAGTGCTAGTTGAGATAGCATGTGCTTCATCTCCTCAACATTTGATGGCAGTGAGGCAGGTCTATGGTTCACTCTTTGAATGCTCACTTGAGGAGGACATTGCATCCACTCTTTCCCTCCCCCTCAGAAAGCTTCTAGTGGGTTTAGTGAGCTCCTACAGGTATGACAGACAGGTAGTGGATTCAAGCATTGCCAGTTCAGAGGCATCGAAGCTATATGAAGTCATCAAGGCAAAGCAATTAGATCACAATCATGTTGTTTCCATACTCGGCACAAGGAATATATTTCAGCTCAGAGAAACCTTTGAGTGTTACAAGCAAAACTATGGAACTTCCATTGACGAGGACATTAAAAGTTGTGGCAGTGGTGATCTGGAATCTCTCTTGACCTTGGTAATTACTTGCATAGATACACCCGAGAAACATTTTGCACAGGTAATTTCATTCCCTAACGCATCAACATATTATATTGTTTATTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

267

Amino Acids

30.17

Weight (kDa)

5.75

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	1.7e-22	Annexin
Annexin	PF00191	88 - 155	1.8e-07	Annexin
Annexin	PF00191	174 - 236	2.7e-16	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38760
fragaria_vesca	FvH4_7g02633 FvH4_7g02633 FvH4_7g02633 FvH4_7g02633
malus_domestica	MD02G1291300.v1.1 MD07G1035300.v1.1
prunus_persica	Prupe.2G031700_v2.0.a1
pyrus_communis	pycom02g24620
rosa_chinensis	RchiOBHm_Chr1g0321331
rosa_laevigata	RLG00000030428
rosa_multiflora	Rmu_sc0000724.1_g000005 Rmu_sc0000960.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433960 Rroxscaffold_4G00327820
rosa_rugosa	Rorug01G0032300
rosa_samantha	Rh1AG044300 Rh1BG042000 Rh1CG047000 Rh1DG051500
rosa_wichuraiana	Rw1G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	74, 398, 504
AluBI	AGCT	6 cut(s)	26, 166, 451, 471, 532, 610
AluI	AGCT	6 cut(s)	26, 166, 451, 471, 532, 610
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	14, 49, 144
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	734
Asp700I	GAANNNNTTC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	698
AvaI	CYCGRG	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	473
BccI	CCATC	1 cut(s)	358
BciVI	GTATCC	1 cut(s)	102
BcoDI	GTCTC	3 cut(s)	14, 49, 144
BfaI	CTAG	2 cut(s)	326, 455
BfmI	CTRYAG	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	734
BmsI	GCATC	7 cut(s)	178, 214, 253, 271, 431, 533, 782
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	3 cut(s)	21, 179, 231
BpuEI	CTTGAG	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	708
Bse1I	ACTGG	2 cut(s)	196, 513
Bse3DI	GCAATG	2 cut(s)	417, 507
Bse8I	GATNNNNATC	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	2 cut(s)	268, 422
BseJI	GATNNNNATC	1 cut(s)	567
BseMI	GCAATG	2 cut(s)	417, 507
BseMII	CTCAG	3 cut(s)	25, 457, 625
BseNI	ACTGG	2 cut(s)	196, 513
BseRI	GAGGAG	3 cut(s)	107, 342, 425
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	734
BslFI	GGGAC	1 cut(s)	163
BsmAI	GTCTC	3 cut(s)	14, 49, 144
BsmFI	GGGAC	1 cut(s)	163
BsmI	GAATGC	2 cut(s)	130, 404
Bso31I	GGTCTC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	247, 562, 688
BspACI	CCGC	1 cut(s)	6
BspCNI	CTCAG	3 cut(s)	24, 456, 624
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	417, 507
BsrI	ACTGG	2 cut(s)	196, 513
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	3 cut(s)	247, 562, 688
BssT1I	CCWWGG	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	11, 443, 611
BstF5I	GGATG	2 cut(s)	268, 422
BstKTI	GATC	3 cut(s)	250, 565, 691
BstMAI	GTCTC	3 cut(s)	14, 49, 144
BstMBI	GATC	3 cut(s)	247, 562, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 281
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	268, 422
BtsI	GCAGTG	2 cut(s)	375, 688
BtsIMutI	CAGTG	2 cut(s)	375, 688
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	2 cut(s)	339, 572
CviJI	RGCY	9 cut(s)	26, 68, 98, 132, 166, 451, 471, 532, 610
CviKI_1	RGCY	9 cut(s)	26, 68, 98, 132, 166, 451, 471, 532, 610
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	3 cut(s)	11, 443, 611
DpnI	GATC	3 cut(s)	249, 564, 690
DpnII	GATC	3 cut(s)	247, 562, 688
Ecl136II	GAGCTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	473
Eco31I	GGTCTC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	734
EcoICRI	GAGCTC	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	2 cut(s)	342, 575
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	338, 571
FauNDI	CATATG	1 cut(s)	244
FokI	GGATG	2 cut(s)	275, 409
FriOI	GRGCYC	1 cut(s)	473
FspBI	CTAG	2 cut(s)	326, 455
GsuI	CTGGAG	3 cut(s)	21, 179, 231
Hin1II	CATG	2 cut(s)	342, 575
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	57, 500, 695
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	2 cut(s)	240, 389
Hpy188I	TCNGA	7 cut(s)	14, 149, 202, 221, 446, 520, 614
Hpy188III	TCNNGA	5 cut(s)	38, 210, 254, 692, 703
Hpy8I	GTNNAC	2 cut(s)	240, 389
HpyAV	CCTTC	2 cut(s)	42, 68
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	6 cut(s)	128, 227, 284, 422, 723, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 281
HpyF3I	CTNAG	3 cut(s)	11, 443, 611
Hsp92II	CATG	2 cut(s)	342, 575
Kzo9I	GATC	3 cut(s)	247, 562, 688
LmnI	GCTCC	1 cut(s)	476
LweI	GCATC	7 cut(s)	178, 214, 253, 271, 431, 533, 782
MaeI	CTAG	2 cut(s)	326, 455
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	3 cut(s)	249, 564, 690
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	3 cut(s)	247, 562, 688
MboII	GAAGA	5 cut(s)	53, 56, 304, 307, 310
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	4 cut(s)	231, 557, 714, 756
MlyI	GAGTC	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	669, 802
MslI	CAYNNNNRTG	2 cut(s)	123, 570
Mva1269I	GAATGC	2 cut(s)	130, 404
MwoI	GCNNNNNNNGC	2 cut(s)	272, 281
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	3 cut(s)	247, 562, 688
NlaIII	CATG	2 cut(s)	342, 575
NmeAIII	GCCGAG	1 cut(s)	567
NspI	RCATGY	1 cut(s)	342
PctI	GAATGC	2 cut(s)	130, 404
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	500, 695
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	2 cut(s)	123, 570
SacI	GAGCTC	1 cut(s)	473
SaqAI	TTAA	2 cut(s)	669, 802
Sau3AI	GATC	3 cut(s)	247, 562, 688
SchI	GAGTC	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	7 cut(s)	178, 214, 253, 271, 431, 533, 782
SfcI	CTRYAG	1 cut(s)	475
SmiMI	CAYNNNNRTG	2 cut(s)	123, 570
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	231, 557, 714, 756
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	326, 455
SstI	GAGCTC	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	527
TasI	AATT	4 cut(s)	231, 557, 714, 756
TfiI	GAWTC	2 cut(s)	500, 695
Tru1I	TTAA	2 cut(s)	669, 802
Tru9I	TTAA	2 cut(s)	669, 802
TscAI	CASTG	2 cut(s)	375, 688
TspDTI	ATGAA	4 cut(s)	305, 336, 552, 750
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	375, 688
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	326, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.