Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010132

Physical Location & Seq

Genomic Coordinates Forward (+)

60673255 .. 60677615

Gene Structure 4361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAGCAGTCTCAGAGTACCAGAAGCTGTTCCTTCTCCAGAAGAAGACTGTGAGAGACTCAATAAAGCCTTTGAAGGATTTGGAACGGATGAGGAGGCTGTAATATGGATACTTGGACATAGGAATGCAAGCCAAAAAAGAAAAATCAGAGACACGTATCAACAGCTTTACAATAAATCCCTCATTGATGCTCTCCAATCTGAACTCTCTGGAGATTTCAGAGATGCAGTAATTTTGTGGACATATGATCCTCCTGAAAGGGATGCTAAAGTGGCAAGAGATGCACTCATGAAGAAGAAGAAAGGAATAAAACACCTGAAAGTGCTAGTTGAGATAGCATGTGCATCATCTCCTCAACACTTGATGGCAGTGAGGCAGGTCTATGGTTCTCTCTTTGAAGGCTCACTTGAGGAGGATATTGCATCCACTCTTTCCCTCCCCTCAGAAAGGTATGACAGACAGGTAGTGGATTCAGCCATTGCCAGTTCAGAGGCATCGAAGCTATATGAAGCCATCAAGGCAAAGCAATTAGATCACAATCATGTTGTTTCCGTACTCAGCACAAGGAATATATTTCAGCTCAGAGAAACCTTTGAGTATTACAAGCAAAACTATGGAACTTCCATTGACGAGGACATTAAAAGTTGTGGCACTGGTGATCTGGAATCTCTCTTGACCTTGGTAATTACTTGCATAGATACACCCGAGAAACATTTTGCACAGGTCATCAAAGATTCTGTGGTTGGGCTTGGGACGGATGAAGATTCTCTGAATAGAGCCATTGTAAGCAGAGCAGAGATTGACATGATCAAAATCAGAGAGGAGTATTCCAAACTGTCCAAAACCAGCCTCGAAGATGATGTTATAGATGACACATCAGGAGAGTACAAAAACTTCCTGCTGACCCTGCTTGGACAAAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

308

Amino Acids

34.74

Weight (kDa)

5.06

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	1.4e-20	Annexin
Annexin	PF00191	88 - 145	6.5e-06	Annexin
Annexin	PF00191	164 - 226	2.4e-15	Annexin
Annexin	PF00191	239 - 303	2.3e-17	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38760
fragaria_vesca	FvH4_7g02633 FvH4_7g02633 FvH4_7g02633 FvH4_7g02633
malus_domestica	MD02G1291300.v1.1 MD07G1035300.v1.1
prunus_persica	Prupe.2G031700_v2.0.a1
pyrus_communis	pycom02g24620
rosa_chinensis	RchiOBHm_Chr1g0321331
rosa_laevigata	RLG00000030428
rosa_multiflora	Rmu_sc0000724.1_g000005 Rmu_sc0000960.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433960 Rroxscaffold_4G00327820
rosa_rugosa	Rorug01G0032300
rosa_samantha	Rh1AG044300 Rh1BG042000 Rh1CG047000 Rh1DG051500
rosa_wichuraiana	Rw1G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	3 cut(s)	18, 555, 887
AfiI	CCNNNNNNNGG	1 cut(s)	447
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	74, 398
AluBI	AGCT	4 cut(s)	26, 166, 502, 580
AluI	AGCT	4 cut(s)	26, 166, 502, 580
Alw26I	GTCTC	3 cut(s)	14, 49, 144
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	704
BarI	GAAGNNNNNNTAC	2 cut(s)	878, 910
BbsI	GAAGAC	1 cut(s)	51
BccI	CCATC	2 cut(s)	358, 521
BciVI	GTATCC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	807
BcoDI	GTCTC	3 cut(s)	14, 49, 144
BfaI	CTAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	518
BmeT110I	CYCGRG	1 cut(s)	704
BmsI	GCATC	7 cut(s)	178, 214, 253, 271, 353, 431, 503
BpiI	GAAGAC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	2 cut(s)	21, 231
BpuEI	CTTGAG	1 cut(s)	428
BsaAI	YACGTR	1 cut(s)	156
BsaBI	GATNNNNATC	2 cut(s)	537, 812
BsaJI	CCNNGG	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse1I	ACTGG	2 cut(s)	483, 658
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	2 cut(s)	537, 812
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	4 cut(s)	94, 268, 422, 763
BseJI	GATNNNNATC	2 cut(s)	537, 812
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	4 cut(s)	25, 456, 571, 595
BseNI	ACTGG	2 cut(s)	483, 658
BseRI	GAGGAG	4 cut(s)	107, 342, 425, 836
BsiHKCI	CYCGRG	1 cut(s)	704
BslFI	GGGAC	1 cut(s)	766
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	3 cut(s)	14, 49, 144
BsmFI	GGGAC	1 cut(s)	766
BsmI	GAATGC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	704
Bsp143I	GATC	4 cut(s)	247, 532, 658, 807
BspCNI	CTCAG	4 cut(s)	24, 455, 570, 594
BspHI	TCATGA	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	483, 658
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	4 cut(s)	247, 532, 658, 807
BssT1I	CCWWGG	1 cut(s)	678
Bst4CI	ACNGT	2 cut(s)	50, 837
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	4 cut(s)	11, 442, 557, 581
BstENI	CCTNNNNNAGG	1 cut(s)	445
BstF5I	GGATG	4 cut(s)	94, 268, 422, 763
BstKTI	GATC	4 cut(s)	250, 535, 661, 810
BstMAI	GTCTC	3 cut(s)	14, 49, 144
BstMBI	GATC	4 cut(s)	247, 532, 658, 807
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 281, 518, 907
BstNSI	RCATGY	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	102
BtsCI	GGATG	4 cut(s)	94, 268, 422, 763
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	375, 651
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	26
CciI	TCATGA	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	17, 554, 886
CviAII	CATG	4 cut(s)	289, 339, 542, 805
CviQI	GTAC	3 cut(s)	17, 554, 886
DdeI	CTNAG	4 cut(s)	11, 442, 557, 581
DpnI	GATC	4 cut(s)	249, 534, 660, 809
DpnII	GATC	4 cut(s)	247, 532, 658, 807
Eco130I	CCWWGG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	704
EcoNI	CCTNNNNNAGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	4 cut(s)	292, 342, 545, 808
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	766
FatI	CATG	4 cut(s)	288, 338, 541, 804
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	807
FokI	GGATG	4 cut(s)	101, 275, 409, 770
FspBI	CTAG	1 cut(s)	326
GsuI	CTGGAG	2 cut(s)	21, 231
Hin1II	CATG	4 cut(s)	292, 342, 545, 808
HinfI	GANTC	6 cut(s)	57, 470, 665, 734, 764, 921
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188III	TCNNGA	7 cut(s)	38, 210, 254, 289, 662, 673, 879
Hpy8I	GTNNAC	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	42, 68, 392
HpyCH4III	ACNGT	2 cut(s)	50, 837
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	7 cut(s)	128, 227, 284, 344, 422, 693, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 281, 518, 907
HpyF3I	CTNAG	4 cut(s)	11, 442, 557, 581
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	292, 342, 545, 808
Ksp22I	TGATCA	1 cut(s)	807
Kzo9I	GATC	4 cut(s)	247, 532, 658, 807
LweI	GCATC	7 cut(s)	178, 214, 253, 271, 353, 431, 503
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	155
MalI	GATC	4 cut(s)	249, 534, 660, 809
MboI	GATC	4 cut(s)	247, 532, 658, 807
MboII	GAAGA	7 cut(s)	53, 56, 304, 307, 310, 773, 866
MluCI	AATT	3 cut(s)	231, 527, 684
MlyI	GAGTC	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	639
MslI	CAYNNNNRTG	2 cut(s)	123, 540
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	272, 281, 518, 907
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	4 cut(s)	247, 532, 658, 807
NlaIII	CATG	4 cut(s)	292, 342, 545, 808
NspI	RCATGY	1 cut(s)	342
PagI	TCATGA	1 cut(s)	288
PctI	GAATGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	5 cut(s)	470, 665, 734, 764, 921
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	156
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	18, 555, 887
RsaNI	GTAC	3 cut(s)	17, 554, 886
RseI	CAYNNNNRTG	2 cut(s)	123, 540
SaqAI	TTAA	1 cut(s)	639
Sau3AI	GATC	4 cut(s)	247, 532, 658, 807
SchI	GAGTC	1 cut(s)	51
SfaNI	GCATC	7 cut(s)	178, 214, 253, 271, 353, 431, 503
SmiMI	CAYNNNNRTG	2 cut(s)	123, 540
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	231, 527, 684
SspMI	CTAG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	50, 837
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	497, 852
TasI	AATT	3 cut(s)	231, 527, 684
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	5 cut(s)	470, 665, 734, 764, 921
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	2 cut(s)	375, 658
TspDTI	ATGAA	3 cut(s)	305, 522, 774
TspGWI	ACGGA	3 cut(s)	101, 541, 770
TspRI	CASTG	2 cut(s)	375, 658
XagI	CCTNNNNNAGG	1 cut(s)	445
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.