Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010132

Physical Location & Seq

Genomic Coordinates Reverse (-)

7392250 .. 7396289

Gene Structure 4040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAGCAGTCTCAGAGTACCAGAAGCTGTTCCTTCTCCAGAAGAAGACTGTGAGAGACTCAAGAAAGCCTTTGAAGGATTTGGAACTGACGAGGAGGCTGTGATATGGATACTCGGACATAGGAATGCAAGCCAAAGGAGAAAAATCAGAGACACTTATCAACAGCTTTACAATAAGTCCCTCATTGATGCTCTCCAATCTGAACTCTCTGGAGATTTCAGAGATGCAGTAATTTTGTGGACATATGATCCTCCTGAAAGGGATGCTAAAGTGGCAAGAGATGCACTAATGAAGAAGAAGAAAGGAATAAAACACCTGAAAGTGCTAGTTGAGATAGCATGTGCTTCATCTCCTCAACATTTGATGGCAGTGAGGCAGGTCTATGGTTCATTCTTTGAATGCTCACTTGAGGAGGACATTGCATCCACTCTTTCCCTCCCCCTCAGAAAGCTTCTAGTGGGTTTAGTGAGCTCCTACAGGTATGACAGACAGGTACTATATGAAGTCATCAAGGCAAAGCAATTAGATCACAATCATGTTGTTTCCATACTCGGCACAAGGAATATATTTCAGCTCAGAGAAACCTTTGAGTGTTACAAGCAAAACTATGGAACTTCCATTGACGAGGACATTAAAAGTTGTGGCAGTGGTGATCTGGAATCTCTCTTGACCTTGGTAATTACTTGCATAGATACACCTGAGAAACATTTTGCACAGGTCATCAAAGATTCTATGGTTGGGCTTGGGACGGATGAAGATTCTCTGAATAGAGCCATTGTAAGCAGAGCAGAGATTGACATGATCAAAATCAGAGAAGAGTATTCCAAATTGTCCAAAACCAGCATCGAAGATGATGTTATAGATGACACATCAGGAGAGTACAAAAACTTCCTGCTGACCCTGCTTGGACAGAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

306

Amino Acids

34.8

Weight (kDa)

5.43

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	1e-22	Annexin
Annexin	PF00191	88 - 155	1.3e-06	Annexin
Annexin	PF00191	161 - 224	4.2e-16	Annexin
Annexin	PF00191	237 - 301	7.4e-18	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38760
fragaria_vesca	FvH4_7g02633 FvH4_7g02633 FvH4_7g02633 FvH4_7g02633
malus_domestica	MD02G1291300.v1.1 MD07G1035300.v1.1
prunus_persica	Prupe.2G031700_v2.0.a1
pyrus_communis	pycom02g24620
rosa_chinensis	RchiOBHm_Chr1g0321331
rosa_laevigata	RLG00000030428
rosa_multiflora	Rmu_sc0000724.1_g000005 Rmu_sc0000960.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433960 Rroxscaffold_4G00327820
rosa_rugosa	Rorug01G0032300
rosa_samantha	Rh1AG044300 Rh1BG042000 Rh1CG047000 Rh1DG051500
rosa_wichuraiana	Rw1G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	3 cut(s)	18, 495, 881
AgsI	TTSAA	2 cut(s)	74, 398
AluBI	AGCT	5 cut(s)	26, 166, 451, 471, 574
AluI	AGCT	5 cut(s)	26, 166, 451, 471, 574
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	14, 49, 144
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	872, 904
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	473
BccI	CCATC	1 cut(s)	358
BciVI	GTATCC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	801
BcoDI	GTCTC	3 cut(s)	14, 49, 144
BfaI	CTAG	2 cut(s)	326, 455
BfmI	CTRYAG	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	102
BmsI	GCATC	6 cut(s)	178, 214, 253, 271, 431, 852
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	2 cut(s)	21, 231
BpuEI	CTTGAG	2 cut(s)	44, 428
BsaBI	GATNNNNATC	2 cut(s)	531, 806
BsaJI	CCNNGG	1 cut(s)	672
Bse3DI	GCAATG	1 cut(s)	417
Bse8I	GATNNNNATC	2 cut(s)	531, 806
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	3 cut(s)	268, 422, 757
BseJI	GATNNNNATC	2 cut(s)	531, 806
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	4 cut(s)	25, 457, 589, 690
BseRI	GAGGAG	3 cut(s)	107, 342, 425
BsiHKAI	GWGCWC	1 cut(s)	473
BslFI	GGGAC	2 cut(s)	163, 760
BsmAI	GTCTC	3 cut(s)	14, 49, 144
BsmFI	GGGAC	2 cut(s)	163, 760
BsmI	GAATGC	2 cut(s)	130, 404
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	247, 526, 652, 801
BspCNI	CTCAG	4 cut(s)	24, 456, 588, 691
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	4 cut(s)	247, 526, 652, 801
BssT1I	CCWWGG	1 cut(s)	672
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	810
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	4 cut(s)	11, 443, 575, 699
BstF5I	GGATG	3 cut(s)	268, 422, 757
BstKTI	GATC	4 cut(s)	250, 529, 655, 804
BstMAI	GTCTC	3 cut(s)	14, 49, 144
BstMBI	GATC	4 cut(s)	247, 526, 652, 801
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 281, 901
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	268, 422, 757
BtsI	GCAGTG	2 cut(s)	375, 652
BtsIMutI	CAGTG	2 cut(s)	375, 652
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	17, 494, 880
CviAII	CATG	3 cut(s)	339, 536, 799
CviQI	GTAC	3 cut(s)	17, 494, 880
DdeI	CTNAG	4 cut(s)	11, 443, 575, 699
DpnI	GATC	4 cut(s)	249, 528, 654, 803
DpnII	GATC	4 cut(s)	247, 526, 652, 801
Eam1104I	CTCTTC	1 cut(s)	810
EarI	CTCTTC	1 cut(s)	810
Ecl136II	GAGCTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	672
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	3 cut(s)	342, 539, 802
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	2 cut(s)	163, 760
FatI	CATG	3 cut(s)	338, 535, 798
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	801
FokI	GGATG	3 cut(s)	275, 409, 764
FriOI	GRGCYC	1 cut(s)	473
FspBI	CTAG	2 cut(s)	326, 455
GsuI	CTGGAG	2 cut(s)	21, 231
Hin1II	CATG	3 cut(s)	342, 539, 802
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	5 cut(s)	57, 659, 728, 758, 915
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188III	TCNNGA	7 cut(s)	38, 61, 210, 254, 656, 667, 873
Hpy8I	GTNNAC	1 cut(s)	240
HpyAV	CCTTC	2 cut(s)	42, 68
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	6 cut(s)	128, 227, 284, 422, 687, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 281, 901
HpyF3I	CTNAG	4 cut(s)	11, 443, 575, 699
Hsp92II	CATG	3 cut(s)	342, 539, 802
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	4 cut(s)	247, 526, 652, 801
LmnI	GCTCC	1 cut(s)	476
LweI	GCATC	6 cut(s)	178, 214, 253, 271, 431, 852
MaeI	CTAG	2 cut(s)	326, 455
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	4 cut(s)	249, 528, 654, 803
MboI	GATC	4 cut(s)	247, 526, 652, 801
MboII	GAAGA	8 cut(s)	53, 56, 304, 307, 310, 767, 827, 860
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	4 cut(s)	231, 521, 678, 827
MlyI	GAGTC	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	2 cut(s)	123, 534
Mva1269I	GAATGC	2 cut(s)	130, 404
MwoI	GCNNNNNNNGC	3 cut(s)	272, 281, 901
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	4 cut(s)	247, 526, 652, 801
NlaIII	CATG	3 cut(s)	342, 539, 802
NmeAIII	GCCGAG	1 cut(s)	531
NspI	RCATGY	1 cut(s)	342
PctI	GAATGC	2 cut(s)	130, 404
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	659, 728, 758, 915
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	18, 495, 881
RsaNI	GTAC	3 cut(s)	17, 494, 880
RseI	CAYNNNNRTG	2 cut(s)	123, 534
SacI	GAGCTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	633
Sau3AI	GATC	4 cut(s)	247, 526, 652, 801
SchI	GAGTC	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	6 cut(s)	178, 214, 253, 271, 431, 852
SfcI	CTRYAG	1 cut(s)	475
SmiMI	CAYNNNNRTG	2 cut(s)	123, 534
SmlI	CTYRAG	2 cut(s)	59, 407
SmoI	CTYRAG	2 cut(s)	59, 407
Sse9I	AATT	4 cut(s)	231, 521, 678, 827
SspMI	CTAG	2 cut(s)	326, 455
SstI	GAGCTC	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	846
TasI	AATT	4 cut(s)	231, 521, 678, 827
TatI	WGTACW	1 cut(s)	879
TfiI	GAWTC	4 cut(s)	659, 728, 758, 915
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	2 cut(s)	375, 652
TspDTI	ATGAA	5 cut(s)	305, 336, 378, 516, 768
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	2 cut(s)	375, 652
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	326, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.