Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010132

Physical Location & Seq

Genomic Coordinates Forward (+)

22759115 .. 22762218

Gene Structure 3104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCGGAGGTTCTTTGGTAAAAAGCGTACCTCGTCACTTCCCAAACAAAACGCTTCGACTGGAAGCTCAGCTTCAGAGAAAGATTACAAGCTGCTGAGCGGATCAATGGGCAGTCTCAAAATACCAGAAACTGTTCCTCCTCCCGACCAAGACTGTCAGAGACTCAAAAAAGCCTTTGATGGATTTGGAACGGACGAGGATGCTGTGATATGGATATTAGGACACAGGAATGCAAGCCAAAGGAGGGAAATCAAAAACACCTACCAACAGCTTTACAATAAATCCCTCATCGATGATCTCCAATCTGAACTTTCGGGAGATTTCAGAGATGCGGTAATTTTGTGGACATGTGATCCTCCCGAAAGGGATGCTAAGTTGGCGAGAGTTGTACTGACGAAGAAGAAGAAAGTTGTAAAACACCTAAAAGTGTTGGTTGAGATAGCTTGCGCATCTTCGCCGAGCCACTTGATGGCAGTGAGGCAGGTCTACAGTTCACTGTTTGATTGTTCACTTGAGGAGGACATTGCCTCAACCATTTCCCTCCCAACCAGAAAGCTTCTCGTTGGTTTAGTGACCTCCTACAGGTACGACAAACAGCTGGTGGATACAGGCATTGCCGATTCAGAGGCATCTAGGTTACACGAAGCCATTGAAACAAAGCAATATGATCACGATCATGTTGTTTGGATACTCAGCACAAGGAACTTCTTTCAGCTCAGAGCAACATTTGAGTGCTACAAACAAAAGTATGGACATTCCATTGACCAGGACATTAAGAGTTGTGGCAATGGAGAATTGGAATCTCTCTTGATAGCGGTATATTGGTGCATAGCATCACCTGCGAAATACTTTGCAGAGGTCATCAAAGATTCCATTGTCGGACTTGGGACGGATGAAGATTCTCTGAATAGAGCCATTGTCACCCGGGCTGAGATCGATCATGATCAAAATCAGAGAGGAGTATTCAAAAATGTCAAAAACCAGCCTTGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

332

Amino Acids

37.4

Weight (kDa)

8.3

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38760
fragaria_vesca	FvH4_7g02633 FvH4_7g02633 FvH4_7g02633 FvH4_7g02633
malus_domestica	MD02G1291300.v1.1 MD07G1035300.v1.1
prunus_persica	Prupe.2G031700_v2.0.a1
pyrus_communis	pycom02g24620
rosa_chinensis	RchiOBHm_Chr1g0321331
rosa_laevigata	RLG00000030428
rosa_multiflora	Rmu_sc0000724.1_g000005 Rmu_sc0000960.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433960 Rroxscaffold_4G00327820
rosa_rugosa	Rorug01G0032300
rosa_samantha	Rh1AG044300 Rh1BG042000 Rh1CG047000 Rh1DG051500
rosa_wichuraiana	Rw1G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	847
Acc16I	TGCGCA	1 cut(s)	448
Acc36I	ACCTGC	2 cut(s)	472, 847
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	4 cut(s)	4, 99, 332, 815
AclWI	GGATC	2 cut(s)	109, 347
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	3 cut(s)	28, 390, 587
AfiI	CCNNNNNNNGG	3 cut(s)	244, 469, 582
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	653, 967
AjnI	CCWGG	1 cut(s)	765
AluBI	AGCT	8 cut(s)	66, 71, 91, 271, 443, 556, 598, 715
AluI	AGCT	8 cut(s)	66, 71, 91, 271, 443, 556, 598, 715
Alw26I	GTCTC	2 cut(s)	119, 154
AlwI	GGATC	2 cut(s)	109, 347
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	924
ApeKI	GCWGC	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	449
AsuC2I	CCSGG	2 cut(s)	925, 926
AsuHPI	GGTGA	2 cut(s)	828, 913
AvaI	CYCGRG	1 cut(s)	924
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	173, 463
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	1 cut(s)	767
BciVI	GTATCC	2 cut(s)	598, 681
BclI	TGATCA	2 cut(s)	667, 943
BcnI	CCSGG	2 cut(s)	925, 926
BcoDI	GTCTC	2 cut(s)	119, 154
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	2 cut(s)	487, 580
BfuAI	ACCTGC	2 cut(s)	472, 847
BfuI	GTATCC	2 cut(s)	598, 681
BisI	GCNGC	1 cut(s)	92
BlpI	GCTNAGC	2 cut(s)	67, 95
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	3 cut(s)	767, 925, 926
BmeT110I	CYCGRG	1 cut(s)	924
BmrFI	CCNGG	3 cut(s)	767, 925, 926
BmsI	GCATC	6 cut(s)	190, 319, 358, 458, 638, 842
Bpu1102I	GCTNAGC	2 cut(s)	67, 95
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	2 cut(s)	925, 926
Bsa29I	ATCGAT	2 cut(s)	291, 936
BsaBI	GATNNNNATC	3 cut(s)	672, 942, 948
BsaJI	CCNNGG	1 cut(s)	924
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 469, 582
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	3 cut(s)	522, 612, 793
Bse8I	GATNNNNATC	3 cut(s)	672, 942, 948
BseBI	CCWGG	1 cut(s)	767
BseCI	ATCGAT	2 cut(s)	291, 936
BseDI	CCNNGG	1 cut(s)	924
BseGI	GGATG	3 cut(s)	205, 373, 898
BseJI	GATNNNNATC	3 cut(s)	672, 942, 948
BseLI	CCNNNNNNNGG	3 cut(s)	244, 469, 582
BseMI	GCAATG	3 cut(s)	522, 612, 793
BseMII	CTCAG	5 cut(s)	81, 86, 706, 730, 921
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	3 cut(s)	129, 530, 972
BseXI	GCAGC	1 cut(s)	78
BshVI	ATCGAT	2 cut(s)	291, 936
BsiHKCI	CYCGRG	1 cut(s)	924
BsiSI	CCGG	1 cut(s)	925
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	3 cut(s)	244, 469, 582
BsmAI	GTCTC	2 cut(s)	119, 154
BsmFI	GGGAC	1 cut(s)	901
BsmI	GAATGC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	924
Bsp143I	GATC	8 cut(s)	101, 295, 352, 667, 673, 933, 937, 943
Bsp1720I	GCTNAGC	2 cut(s)	67, 95
BspACI	CCGC	4 cut(s)	4, 99, 332, 815
BspCNI	CTCAG	5 cut(s)	80, 87, 705, 729, 922
BspDI	ATCGAT	2 cut(s)	291, 936
BspHI	TCATGA	1 cut(s)	940
BspMI	ACCTGC	2 cut(s)	472, 847
BspPI	GGATC	2 cut(s)	109, 347
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	3 cut(s)	522, 612, 793
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	924
BssMI	GATC	8 cut(s)	101, 295, 352, 667, 673, 933, 937, 943
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	4 cut(s)	133, 155, 491, 498
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstC8I	GCNNGC	2 cut(s)	235, 445
BstDEI	CTNAG	6 cut(s)	67, 95, 372, 692, 716, 930
BstENI	CCTNNNNNAGG	1 cut(s)	580
BstF5I	GGATG	3 cut(s)	205, 373, 898
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	8 cut(s)	104, 298, 355, 670, 676, 936, 940, 946
BstMAI	GTCTC	2 cut(s)	119, 154
BstMBI	GATC	8 cut(s)	101, 295, 352, 667, 673, 933, 937, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 839
BstNI	CCWGG	1 cut(s)	767
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	3 cut(s)	765, 923, 924
BstSFI	CTRYAG	2 cut(s)	487, 580
BstV1I	GCAGC	1 cut(s)	78
Bsu15I	ATCGAT	2 cut(s)	291, 936
BsuI	GTATCC	2 cut(s)	598, 681
BsuTUI	ATCGAT	2 cut(s)	291, 936
BtsCI	GGATG	3 cut(s)	205, 373, 898
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	480, 494
BveI	ACCTGC	2 cut(s)	472, 847
Cac8I	GCNNGC	2 cut(s)	235, 445
CaiI	CAGNNNCTG	1 cut(s)	131
CciI	TCATGA	1 cut(s)	940
CfoI	GCGC	1 cut(s)	449
Cfr9I	CCCGGG	1 cut(s)	924
ClaI	ATCGAT	2 cut(s)	291, 936
Csp6I	GTAC	3 cut(s)	27, 389, 586
CviAII	CATG	3 cut(s)	348, 677, 941
CviQI	GTAC	3 cut(s)	27, 389, 586
DdeI	CTNAG	6 cut(s)	67, 95, 372, 692, 716, 930
DpnI	GATC	8 cut(s)	103, 297, 354, 669, 675, 935, 939, 945
DpnII	GATC	8 cut(s)	101, 295, 352, 667, 673, 933, 937, 943
Eco57I	CTGAAG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	924
EcoNI	CCTNNNNNAGG	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	765
FaeI	CATG	3 cut(s)	351, 680, 944
FaiI	YATR	8 cut(s)	211, 349, 666, 678, 750, 820, 830, 942
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	901
FatI	CATG	3 cut(s)	347, 676, 940
FbaI	TGATCA	2 cut(s)	667, 943
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	3 cut(s)	212, 380, 905
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	633
FspI	TGCGCA	1 cut(s)	448
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	1 cut(s)	92
HapII	CCGG	1 cut(s)	925
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	351, 680, 944
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	5 cut(s)	162, 620, 800, 869, 899
HpaII	CCGG	1 cut(s)	925
HphI	GGTGA	2 cut(s)	828, 913
Hpy166II	GTNNAC	4 cut(s)	345, 487, 494, 509
Hpy188I	TCNGA	9 cut(s)	76, 159, 307, 326, 625, 719, 881, 906, 954
Hpy188III	TCNNGA	6 cut(s)	143, 315, 359, 671, 808, 941
Hpy8I	GTNNAC	4 cut(s)	345, 487, 494, 509
HpyCH4III	ACNGT	4 cut(s)	133, 155, 491, 498
HpyCH4V	TGCA	3 cut(s)	233, 828, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 839
HpyF3I	CTNAG	6 cut(s)	67, 95, 372, 692, 716, 930
Hsp92II	CATG	3 cut(s)	351, 680, 944
HspAI	GCGC	1 cut(s)	447
Ksp22I	TGATCA	2 cut(s)	667, 943
Kzo9I	GATC	8 cut(s)	101, 295, 352, 667, 673, 933, 937, 943
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	6 cut(s)	190, 319, 358, 458, 638, 842
MaeI	CTAG	1 cut(s)	633
MaeIII	GTNAC	4 cut(s)	33, 571, 636, 919
MalI	GATC	8 cut(s)	103, 297, 354, 669, 675, 935, 939, 945
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	8 cut(s)	101, 295, 352, 667, 673, 933, 937, 943
MboII	GAAGA	5 cut(s)	409, 412, 415, 444, 908
MluCI	AATT	2 cut(s)	336, 794
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	859
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	774
MslI	CAYNNNNRTG	3 cut(s)	228, 675, 730
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	1 cut(s)	925
MspR9I	CCNGG	3 cut(s)	767, 925, 926
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	767
MwoI	GCNNNNNNNGC	2 cut(s)	377, 839
NciI	CCSGG	2 cut(s)	925, 926
NdeII	GATC	8 cut(s)	101, 295, 352, 667, 673, 933, 937, 943
NlaIII	CATG	3 cut(s)	351, 680, 944
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	3 cut(s)	33, 571, 919
NsbI	TGCGCA	1 cut(s)	448
NspI	RCATGY	1 cut(s)	351
PagI	TCATGA	1 cut(s)	940
PaqCI	CACCTGC	1 cut(s)	847
PciI	ACATGT	1 cut(s)	347
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	4 cut(s)	620, 800, 869, 899
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PscI	ACATGT	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	765
PstNI	CAGNNNCTG	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	3 cut(s)	28, 390, 587
RsaNI	GTAC	3 cut(s)	27, 389, 586
RseI	CAYNNNNRTG	3 cut(s)	228, 675, 730
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	8 cut(s)	101, 295, 352, 667, 673, 933, 937, 943
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	767, 925, 926
SfaNI	GCATC	6 cut(s)	190, 319, 358, 458, 638, 842
SfcI	CTRYAG	2 cut(s)	487, 580
SmaI	CCCGGG	1 cut(s)	926
SmiMI	CAYNNNNRTG	3 cut(s)	228, 675, 730
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	2 cut(s)	336, 794
SsiI	CCGC	4 cut(s)	4, 99, 332, 815
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	3 cut(s)	765, 923, 924
TaaI	ACNGT	4 cut(s)	133, 155, 491, 498
TaqI	TCGA	4 cut(s)	56, 291, 936, 991
TasI	AATT	2 cut(s)	336, 794
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	4 cut(s)	620, 800, 869, 899
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TscAI	CASTG	2 cut(s)	480, 501
TseFI	GTSAC	3 cut(s)	33, 571, 919
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	3 cut(s)	33, 571, 919
TspDTI	ATGAA	1 cut(s)	909
TspGWI	ACGGA	2 cut(s)	206, 905
TspMI	CCCGGG	1 cut(s)	924
TspRI	CASTG	2 cut(s)	480, 501
Van91I	CCANNNNNTGG	1 cut(s)	469
XagI	CCTNNNNNAGG	1 cut(s)	580
XceI	RCATGY	1 cut(s)	351
XmaI	CCCGGG	1 cut(s)	924
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.