Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000160

Orthogroup ID

OG0010132

Physical Location & Seq

Genomic Coordinates Reverse (-)

474730 .. 479094

Gene Structure 4365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_160G00433960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGCAGTCTCAGAGTACCAGAAGCTGTTCCTTCTCCAGAAGAAGACTGTGAGAGACTCAATAAAGCCTTTGAAGGATTTGGAACGGATGAGGAGGCTGTAATATGGATACTTGGACATAGGAATGCAAGCCAAAAAAGAAAAATCAGAGACACGTATCAACAGCTTTACAATAAATCCCTCATTGATGCTCTCCAATCTGAACTCTCTGGAGATTTCAGAGATGCAGTAATTTTGTGGACATATGATCCTCCTGAAAGGGATGCTAAAGTGGCAAGAGATGCACTCATGAAGAAGAAGAAAGGAATAAAACACCTGAAAGTGCTAGTTGAGATAGCATGTGCATCATCTCCTCAACACTTGATGGCAGTGAGGCAGGTCTATGGTTCTCTCTTTGAAGGCTCACTTGAGGAGGATATTGCATCCACTCTTTCCCTCCCCCTCAGAAAGCTTCTAGTGGGTTTAGTGAGCTCCTACAGGTATGACAGACAGGTAGTGGATTCAGCCATTGCCAGTTCAGAGGCATCGAAGCTATATGAAGCCATCAAGGCAAAGCAATTAGATCACAATCATGTTGTTTCCGTACTCAGCACAAGGAATATATTTCAGCTCAGAGAAACCTTTGAGTATTACAAGCAAAACTATGGAACTTCCATTGACGAGGTATTGGCTCTGGTTTTCTACAGTTTACTAGACATTAAAAGTTGTGGCACTGGTGATCTGGAATCTCTCTTGACCTTGGTAATTACTTGCATAGATACACCCGAGAAACATTTTGCACAGGTCATCAAAGATTCTGTGGTTGGGCTTGGGACGGATGAAGATTCTCTGAATAGAGCCATTGTAAGCAGAGCAGAGATTGACATGATCAAAATCAGAGAGGAGTATTCCAAACTGTCCAAAACCAGCCTCGAAGATGATGTTATAGATGACACATCAGGAGAGTACAAAAACTTCCTGCTGACCCTGCTTGGACAAAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

328

Amino Acids

36.97

Weight (kDa)

5.26

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	1.6e-20	Annexin
Annexin	PF00191	88 - 155	2.1e-07	Annexin
Annexin	PF00191	174 - 223	1.3e-09	Annexin
Annexin	PF00191	259 - 323	2.6e-17	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38760
fragaria_vesca	FvH4_7g02633 FvH4_7g02633 FvH4_7g02633 FvH4_7g02633
malus_domestica	MD02G1291300.v1.1 MD07G1035300.v1.1
prunus_persica	Prupe.2G031700_v2.0.a1
pyrus_communis	pycom02g24620
rosa_chinensis	RchiOBHm_Chr1g0321331
rosa_laevigata	RLG00000030428
rosa_multiflora	Rmu_sc0000724.1_g000005 Rmu_sc0000960.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433960 Rroxscaffold_4G00327820
rosa_rugosa	Rorug01G0032300
rosa_samantha	Rh1AG044300 Rh1BG042000 Rh1CG047000 Rh1DG051500
rosa_wichuraiana	Rw1G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	3 cut(s)	18, 585, 947
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	74, 398
AluBI	AGCT	6 cut(s)	26, 166, 451, 471, 532, 610
AluI	AGCT	6 cut(s)	26, 166, 451, 471, 532, 610
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	14, 49, 144
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	764
Asp700I	GAANNNNTTC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	728
AvaI	CYCGRG	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	938, 970
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	473
BccI	CCATC	2 cut(s)	358, 551
BciVI	GTATCC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	867
BcoDI	GTCTC	3 cut(s)	14, 49, 144
BfaI	CTAG	3 cut(s)	326, 455, 692
BfmI	CTRYAG	2 cut(s)	475, 682
BfuAI	ACCTGC	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	548
BmeT110I	CYCGRG	1 cut(s)	764
BmsI	GCATC	7 cut(s)	178, 214, 253, 271, 353, 431, 533
BpiI	GAAGAC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	2 cut(s)	21, 231
BpuEI	CTTGAG	1 cut(s)	428
BsaAI	YACGTR	1 cut(s)	156
BsaBI	GATNNNNATC	2 cut(s)	567, 872
BsaJI	CCNNGG	1 cut(s)	738
Bse1I	ACTGG	2 cut(s)	513, 718
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	2 cut(s)	567, 872
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	4 cut(s)	94, 268, 422, 823
BseJI	GATNNNNATC	2 cut(s)	567, 872
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	4 cut(s)	25, 457, 601, 625
BseNI	ACTGG	2 cut(s)	513, 718
BseRI	GAGGAG	4 cut(s)	107, 342, 425, 896
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	826
BsmAI	GTCTC	3 cut(s)	14, 49, 144
BsmFI	GGGAC	1 cut(s)	826
BsmI	GAATGC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	247, 562, 718, 867
BspCNI	CTCAG	4 cut(s)	24, 456, 600, 624
BspHI	TCATGA	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	513, 718
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	4 cut(s)	247, 562, 718, 867
BssT1I	CCWWGG	1 cut(s)	738
Bst4CI	ACNGT	3 cut(s)	50, 686, 897
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	4 cut(s)	11, 443, 587, 611
BstF5I	GGATG	4 cut(s)	94, 268, 422, 823
BstKTI	GATC	4 cut(s)	250, 565, 721, 870
BstMAI	GTCTC	3 cut(s)	14, 49, 144
BstMBI	GATC	4 cut(s)	247, 562, 718, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 281, 548, 967
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	2 cut(s)	475, 682
BstV2I	GAAGAC	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	102
BtsCI	GGATG	4 cut(s)	94, 268, 422, 823
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	375, 711
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	26
CciI	TCATGA	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	17, 584, 946
CviAII	CATG	4 cut(s)	289, 339, 572, 865
CviQI	GTAC	3 cut(s)	17, 584, 946
DdeI	CTNAG	4 cut(s)	11, 443, 587, 611
DpnI	GATC	4 cut(s)	249, 564, 720, 869
DpnII	GATC	4 cut(s)	247, 562, 718, 867
Ecl136II	GAGCTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	764
EcoICRI	GAGCTC	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	4 cut(s)	292, 342, 575, 868
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	4 cut(s)	288, 338, 571, 864
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	867
FokI	GGATG	4 cut(s)	101, 275, 409, 830
FriOI	GRGCYC	1 cut(s)	473
FspBI	CTAG	3 cut(s)	326, 455, 692
GsuI	CTGGAG	2 cut(s)	21, 231
Hin1II	CATG	4 cut(s)	292, 342, 575, 868
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	6 cut(s)	57, 500, 725, 794, 824, 981
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	2 cut(s)	240, 689
Hpy188III	TCNNGA	7 cut(s)	38, 210, 254, 289, 722, 733, 939
Hpy8I	GTNNAC	2 cut(s)	240, 689
HpyAV	CCTTC	3 cut(s)	42, 68, 392
HpyCH4III	ACNGT	3 cut(s)	50, 686, 897
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	7 cut(s)	128, 227, 284, 344, 422, 753, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 281, 548, 967
HpyF3I	CTNAG	4 cut(s)	11, 443, 587, 611
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	292, 342, 575, 868
Ksp22I	TGATCA	1 cut(s)	867
Kzo9I	GATC	4 cut(s)	247, 562, 718, 867
LmnI	GCTCC	1 cut(s)	476
LweI	GCATC	7 cut(s)	178, 214, 253, 271, 353, 431, 533
MaeI	CTAG	3 cut(s)	326, 455, 692
MaeII	ACGT	1 cut(s)	155
MalI	GATC	4 cut(s)	249, 564, 720, 869
MboI	GATC	4 cut(s)	247, 562, 718, 867
MboII	GAAGA	7 cut(s)	53, 56, 304, 307, 310, 833, 926
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	231, 557, 744
MlyI	GAGTC	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	699
MslI	CAYNNNNRTG	2 cut(s)	123, 570
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	272, 281, 548, 967
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	4 cut(s)	247, 562, 718, 867
NlaIII	CATG	4 cut(s)	292, 342, 575, 868
NspI	RCATGY	1 cut(s)	342
PagI	TCATGA	1 cut(s)	288
PctI	GAATGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	5 cut(s)	500, 725, 794, 824, 981
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	18, 585, 947
RsaNI	GTAC	3 cut(s)	17, 584, 946
RseI	CAYNNNNRTG	2 cut(s)	123, 570
SacI	GAGCTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	699
Sau3AI	GATC	4 cut(s)	247, 562, 718, 867
SchI	GAGTC	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	7 cut(s)	178, 214, 253, 271, 353, 431, 533
SfcI	CTRYAG	2 cut(s)	475, 682
SmiMI	CAYNNNNRTG	2 cut(s)	123, 570
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	231, 557, 744
SspMI	CTAG	3 cut(s)	326, 455, 692
SstI	GAGCTC	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	3 cut(s)	50, 686, 897
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	527, 912
TasI	AATT	3 cut(s)	231, 557, 744
TatI	WGTACW	1 cut(s)	945
TfiI	GAWTC	5 cut(s)	500, 725, 794, 824, 981
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	2 cut(s)	375, 718
TspDTI	ATGAA	3 cut(s)	305, 552, 834
TspGWI	ACGGA	3 cut(s)	101, 571, 830
TspRI	CASTG	2 cut(s)	375, 718
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	3 cut(s)	326, 455, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.