Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010132

Physical Location & Seq

Genomic Coordinates Reverse (-)

8908723 .. 8912957

Gene Structure 4235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGCGGTCTCAGAGTACCAGAAGCTGTTCCTTCTCCAGAAGAAGACTGTGAGAGACTCAATAAAGCCTTTGAAGGATTTGGAACTGACGAGGAGGCTGTGATATGGATACTCGGACATAGGAATGCAAGCCAAAGGAGAAAAATCAGAGACACTTATCAACAGCTTTACAATAAGTCCCTCATTGATGCTCTCCAATCTGAACTCTCCGGAGATTTCAGAGATGCAGTAATTTTGTGGACATATGATCCTCCTGAAAGGGATGCTAAAGTGGCAAGAGATGCACTAATGAAGAAGAAGAAAGGAATAAAACACCTGAAAGTGCTAGTTGAGATAGCATGTGCATCATCTCCTCAACACTTGATGGCAGTGAGGCAGGTCTATGGTTCACTCTTTGAATGCTCACTTGAGGAGGACATTGCATCCACTCTTTCCCTCCCCCTCAGAAAGCTTCTATTGGGTTTAGTGAGCTCCTACAGGTATGACAGACAGGTAGTGGATTCAAGCATTGCCAGTTCAGAGGCATCGAAGCTATATGAAGCCATCAAGGCAAAGCAATTAGATCACAATCATGTTGTTTCTATACTCAGCACAAGGAATATGTTTCAGCTCAGAGAAACCTTTGAGTGTTACAAGCAAAACTATGGAACTTCCATTGACGAGAACATTAAAAGTTGTGGCAGTGGTGATCTGGAATCTCTCTTGACCTTGGTAATTACTTGCATAGATACACCCGAGAAACATTTTGCACAGGTCATCAAAGATTCTGTGGTTGGGCTTGGGACCGATGAAGATTCTCTGAATAGAGCCATTGTAAGCAGAGCAGAGATTGACATGATCAAAATCAGAGAGGAGTATTCCAAACTGTCCAAAACCAGCCTCGAAGGTGATGTTATAGATGACACATCAGGAGAGTACAAAAACTTCCTGCTGACCCTGCTTGGACAAAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

318

Amino Acids

35.82

Weight (kDa)

5.44

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	2.3e-22	Annexin
Annexin	PF00191	88 - 155	2.2e-07	Annexin
Annexin	PF00191	174 - 236	2.3e-16	Annexin
Annexin	PF00191	249 - 313	2.6e-16	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38760
fragaria_vesca	FvH4_7g02633 FvH4_7g02633 FvH4_7g02633 FvH4_7g02633
malus_domestica	MD02G1291300.v1.1 MD07G1035300.v1.1
prunus_persica	Prupe.2G031700_v2.0.a1
pyrus_communis	pycom02g24620
rosa_chinensis	RchiOBHm_Chr1g0321331
rosa_laevigata	RLG00000030428
rosa_multiflora	Rmu_sc0000724.1_g000005 Rmu_sc0000960.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433960 Rroxscaffold_4G00327820
rosa_rugosa	Rorug01G0032300
rosa_samantha	Rh1AG044300 Rh1BG042000 Rh1CG047000 Rh1DG051500
rosa_wichuraiana	Rw1G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	6
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	2 cut(s)	18, 917
AgsI	TTSAA	3 cut(s)	74, 398, 504
AluBI	AGCT	6 cut(s)	26, 166, 451, 471, 532, 610
AluI	AGCT	6 cut(s)	26, 166, 451, 471, 532, 610
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	14, 49, 144
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	734
Aor13HI	TCCGGA	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	783
AsuHPI	GGTGA	2 cut(s)	698, 899
AvaI	CYCGRG	1 cut(s)	734
AvaII	GGWCC	1 cut(s)	783
BanII	GRGCYC	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	908, 940
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	473
BccI	CCATC	2 cut(s)	358, 551
BciVI	GTATCC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	3 cut(s)	14, 49, 144
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	548
Bme18I	GGWCC	1 cut(s)	783
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	1 cut(s)	783
BmiI	GGNNCC	1 cut(s)	784
BmsI	GCATC	7 cut(s)	178, 214, 253, 271, 353, 431, 533
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	428
BsaBI	GATNNNNATC	2 cut(s)	567, 842
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	513
Bse3DI	GCAATG	2 cut(s)	417, 507
Bse8I	GATNNNNATC	2 cut(s)	567, 842
BseAI	TCCGGA	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	2 cut(s)	268, 422
BseJI	GATNNNNATC	2 cut(s)	567, 842
BseMI	GCAATG	2 cut(s)	417, 507
BseMII	CTCAG	4 cut(s)	25, 457, 601, 625
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	4 cut(s)	107, 342, 425, 866
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	163, 796
BsmAI	GTCTC	3 cut(s)	14, 49, 144
BsmFI	GGGAC	2 cut(s)	163, 796
BsmI	GAATGC	2 cut(s)	130, 404
Bso31I	GGTCTC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp13I	TCCGGA	1 cut(s)	209
Bsp143I	GATC	4 cut(s)	247, 562, 688, 837
BspACI	CCGC	1 cut(s)	6
BspCNI	CTCAG	4 cut(s)	24, 456, 600, 624
BspEI	TCCGGA	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	784
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	417, 507
BsrI	ACTGG	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	4 cut(s)	247, 562, 688, 837
BssT1I	CCWWGG	1 cut(s)	708
Bst4CI	ACNGT	2 cut(s)	50, 867
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	4 cut(s)	11, 443, 587, 611
BstF5I	GGATG	2 cut(s)	268, 422
BstKTI	GATC	4 cut(s)	250, 565, 691, 840
BstMAI	GTCTC	3 cut(s)	14, 49, 144
BstMBI	GATC	4 cut(s)	247, 562, 688, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 281, 548, 937
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	268, 422
BtsI	GCAGTG	2 cut(s)	375, 688
BtsIMutI	CAGTG	2 cut(s)	375, 688
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	783
Csp6I	GTAC	2 cut(s)	17, 916
CviAII	CATG	3 cut(s)	339, 572, 835
CviQI	GTAC	2 cut(s)	17, 916
DdeI	CTNAG	4 cut(s)	11, 443, 587, 611
DpnI	GATC	4 cut(s)	249, 564, 690, 839
DpnII	GATC	4 cut(s)	247, 562, 688, 837
Ecl136II	GAGCTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	473
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	783
Eco53kI	GAGCTC	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	734
EcoICRI	GAGCTC	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	3 cut(s)	342, 575, 838
FaqI	GGGAC	2 cut(s)	163, 796
FatI	CATG	3 cut(s)	338, 571, 834
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	837
FokI	GGATG	2 cut(s)	275, 409
FriOI	GRGCYC	1 cut(s)	473
FspBI	CTAG	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	21
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	3 cut(s)	342, 575, 838
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	6 cut(s)	57, 500, 695, 764, 794, 951
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	698, 899
Hpy166II	GTNNAC	2 cut(s)	240, 389
Hpy188III	TCNNGA	6 cut(s)	38, 210, 254, 692, 703, 909
Hpy8I	GTNNAC	2 cut(s)	240, 389
HpyAV	CCTTC	3 cut(s)	42, 68, 878
HpyCH4III	ACNGT	2 cut(s)	50, 867
HpyCH4V	TGCA	7 cut(s)	128, 227, 284, 344, 422, 723, 749
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 281, 548, 937
HpyF3I	CTNAG	4 cut(s)	11, 443, 587, 611
Hsp92II	CATG	3 cut(s)	342, 575, 838
Kpn2I	TCCGGA	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	4 cut(s)	247, 562, 688, 837
LmnI	GCTCC	1 cut(s)	476
LweI	GCATC	7 cut(s)	178, 214, 253, 271, 353, 431, 533
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	4 cut(s)	249, 564, 690, 839
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	4 cut(s)	247, 562, 688, 837
MboII	GAAGA	6 cut(s)	53, 56, 304, 307, 310, 803
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	231, 557, 714
MlyI	GAGTC	1 cut(s)	51
MroI	TCCGGA	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	669
MslI	CAYNNNNRTG	2 cut(s)	123, 570
MspI	CCGG	1 cut(s)	210
Mva1269I	GAATGC	2 cut(s)	130, 404
MwoI	GCNNNNNNNGC	4 cut(s)	272, 281, 548, 937
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	4 cut(s)	247, 562, 688, 837
NlaIII	CATG	3 cut(s)	342, 575, 838
NlaIV	GGNNCC	1 cut(s)	784
NspI	RCATGY	1 cut(s)	342
PctI	GAATGC	2 cut(s)	130, 404
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	5 cut(s)	500, 695, 764, 794, 951
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	784
PspPI	GGNCC	1 cut(s)	783
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	18, 917
RsaNI	GTAC	2 cut(s)	17, 916
RseI	CAYNNNNRTG	2 cut(s)	123, 570
SacI	GAGCTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	669
Sau3AI	GATC	4 cut(s)	247, 562, 688, 837
Sau96I	GGNCC	1 cut(s)	783
SchI	GAGTC	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	7 cut(s)	178, 214, 253, 271, 353, 431, 533
SfcI	CTRYAG	1 cut(s)	475
SinI	GGWCC	1 cut(s)	783
SmiMI	CAYNNNNRTG	2 cut(s)	123, 570
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	231, 557, 714
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	2 cut(s)	50, 867
TaqI	TCGA	2 cut(s)	527, 882
TaqII	GACCGA	1 cut(s)	800
TasI	AATT	3 cut(s)	231, 557, 714
TatI	WGTACW	1 cut(s)	915
TfiI	GAWTC	5 cut(s)	500, 695, 764, 794, 951
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	2 cut(s)	375, 688
TspDTI	ATGAA	3 cut(s)	305, 552, 804
TspRI	CASTG	2 cut(s)	375, 688
VpaK11BI	GGWCC	1 cut(s)	783
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.