Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010132

Physical Location & Seq

Genomic Coordinates Reverse (-)

2946191 .. 2949674

Gene Structure 3484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02633.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCCACTCTTAGAGTACCAGAAGCTGTTCCTTCTCCTGAACAAGACTGTGAGAGACTCCACAAAGCCTTTGAAGGATTTGGAACGGATGAGGAGGCTGTGATATGGGTACTGGGACATAGGAATGCAAGTCAAAGGAGAGAAATCAGAGACACTTATCAACGCCTTTACAATAAGTCCCTCATTGATGTTCTCCATTCTGAACTCTCTGGAGATTTTAGGGATGCAGTAATTATGTGGACATATGATCCTCCTGAAAGGGATGCTAAACTGGCAAGAGACGCACTGAAGCAGAAGAAGAAAGGCATAAAACAACTGAAAGTGCTAGTTGAGATAGCATGTGCATCATCTCCTCACCACTTGATGGCAGTGAGGCAGGTCTATGGTTCACTTTTTGAATGCTCACTTGAGGAGGACATTGCATCCAATCTTTCCCTCCCCCTCAGAAAGCTTCTAGTGGGTTTAGTGAGCTCATACAGGTATGACAGAGAGCTAGTGGATTCCGGCATTGCCAGTTCAGAGGCACTGAAGCTACATGAAGCCATCAAGACAAAGCAGTTAGATCACAATCATGTTGTTTCCATACTCAGCACAAGGAATATATTTCAGCTTAGAGAAACCTTTGAGTGTTACAAGCAAAACTATGGAACTTCCATTGACCAGGACATTAAAAATTGTGGCGCTGGTGATTTGGAATCTCTCTTGACCTTGGTAATTACTTGCATTGATACACCAGAGAAACAATTTGCACAGGTCATTAATGAGTCTGTGGTTGGGCTCGGGACGGATGAAGAGTCTCTGAATAGAGCCATTGTAAGCCGAGCTGAGATTGACATGATCAAAATCAGAGAGGAGTATTCCACACTTTTCAAAACCAGCCTGGAAGATGATGTTAAGGGTGACACATCCGGAGACTACAAAGACTTCCTGCTGACCCTGCTGGGAGCAAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

319

Amino Acids

35.94

Weight (kDa)

5.32

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	15 - 79	1e-21	Annexin
Annexin	PF00191	88 - 155	2.5e-07	Annexin
Annexin	PF00191	175 - 236	1.6e-15	Annexin
Annexin	PF00191	248 - 313	2.6e-19	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38760
fragaria_vesca	FvH4_7g02633 FvH4_7g02633 FvH4_7g02633 FvH4_7g02633
malus_domestica	MD02G1291300.v1.1 MD07G1035300.v1.1
prunus_persica	Prupe.2G031700_v2.0.a1
pyrus_communis	pycom02g24620
rosa_chinensis	RchiOBHm_Chr1g0321331
rosa_laevigata	RLG00000030428
rosa_multiflora	Rmu_sc0000724.1_g000005 Rmu_sc0000960.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433960 Rroxscaffold_4G00327820
rosa_rugosa	Rorug01G0032300
rosa_samantha	Rh1AG044300 Rh1BG042000 Rh1CG047000 Rh1DG051500
rosa_wichuraiana	Rw1G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccIII	TCCGGA	1 cut(s)	908
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	308, 548
AfaI	GTAC	2 cut(s)	18, 111
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	74, 398, 871
AjnI	CCWGG	2 cut(s)	660, 879
AluBI	AGCT	7 cut(s)	26, 451, 471, 493, 532, 610, 824
AluI	AGCT	7 cut(s)	26, 451, 471, 493, 532, 610, 824
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	5 cut(s)	49, 144, 273, 801, 906
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	779
Aor13HI	TCCGGA	1 cut(s)	908
AoxI	GGCC	1 cut(s)	3
AseI	ATTAAT	1 cut(s)	759
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	683
AsuHPI	GGTGA	3 cut(s)	347, 698, 911
AvaI	CYCGRG	1 cut(s)	779
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	473, 780
Bbv12I	GWGCWC	1 cut(s)	473
BccI	CCATC	2 cut(s)	358, 551
BciT130I	CCWGG	2 cut(s)	662, 881
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	5 cut(s)	49, 144, 273, 801, 906
BfaI	CTAG	3 cut(s)	326, 455, 494
BfoI	RGCGCY	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	662, 881
BmeT110I	CYCGRG	1 cut(s)	779
BmrFI	CCNGG	2 cut(s)	662, 881
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	4 cut(s)	214, 253, 353, 431
BmuI	ACTGGG	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	428
BsaBI	GATNNNNATC	2 cut(s)	567, 842
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	1 cut(s)	908
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	117, 276, 513
Bse3DI	GCAATG	2 cut(s)	417, 507
Bse8I	GATNNNNATC	2 cut(s)	567, 842
BseAI	TCCGGA	1 cut(s)	908
BseBI	CCWGG	2 cut(s)	662, 881
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	6 cut(s)	94, 229, 268, 422, 793, 905
BseJI	GATNNNNATC	2 cut(s)	567, 842
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	2 cut(s)	417, 507
BseMII	CTCAG	3 cut(s)	457, 601, 816
BseNI	ACTGG	3 cut(s)	117, 276, 513
BseRI	GAGGAG	4 cut(s)	107, 342, 425, 866
BseYI	CCCAGC	1 cut(s)	940
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	2 cut(s)	504, 909
BslFI	GGGAC	3 cut(s)	129, 163, 796
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	5 cut(s)	49, 144, 273, 801, 906
BsmBI	CGTCTC	1 cut(s)	273
BsmFI	GGGAC	3 cut(s)	129, 163, 796
BsmI	GAATGC	2 cut(s)	130, 404
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	779
Bsp1286I	GDGCHC	2 cut(s)	473, 780
Bsp13I	TCCGGA	1 cut(s)	908
Bsp143I	GATC	3 cut(s)	247, 562, 837
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	456, 600, 817
BspEI	TCCGGA	1 cut(s)	908
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	242
BsrDI	GCAATG	2 cut(s)	417, 507
BsrI	ACTGG	3 cut(s)	117, 276, 513
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	3 cut(s)	247, 562, 837
BssT1I	CCWWGG	1 cut(s)	708
Bst2UI	CCWGG	2 cut(s)	662, 881
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	786
BstDEI	CTNAG	5 cut(s)	11, 443, 587, 611, 825
BstF5I	GGATG	6 cut(s)	94, 229, 268, 422, 793, 905
BstH2I	RGCGCY	1 cut(s)	684
BstHHI	GCGC	1 cut(s)	683
BstKTI	GATC	3 cut(s)	250, 565, 840
BstMAI	GTCTC	5 cut(s)	49, 144, 273, 801, 906
BstMBI	GATC	3 cut(s)	247, 562, 837
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 281, 937
BstNI	CCWGG	2 cut(s)	662, 881
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	660, 879
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	6 cut(s)	94, 229, 268, 422, 793, 905
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	3 cut(s)	284, 375, 524
BveI	ACCTGC	1 cut(s)	367
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	1 cut(s)	683
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	17, 110
CviAII	CATG	4 cut(s)	339, 536, 572, 835
CviQI	GTAC	2 cut(s)	17, 110
DdeI	CTNAG	5 cut(s)	11, 443, 587, 611, 825
DpnI	GATC	3 cut(s)	249, 564, 839
DpnII	GATC	3 cut(s)	247, 562, 837
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Ecl136II	GAGCTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	2 cut(s)	473, 780
Eco53kI	GAGCTC	1 cut(s)	471
Eco57I	CTGAAG	2 cut(s)	308, 548
Eco88I	CYCGRG	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	660, 879
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	2 cut(s)	473, 780
ErhI	CCWWGG	1 cut(s)	708
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	4 cut(s)	342, 539, 575, 838
FaqI	GGGAC	3 cut(s)	129, 163, 796
FatI	CATG	4 cut(s)	338, 535, 571, 834
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	837
FokI	GGATG	6 cut(s)	101, 236, 275, 409, 800, 892
FriOI	GRGCYC	2 cut(s)	473, 780
FspBI	CTAG	3 cut(s)	326, 455, 494
GlaI	GCGC	1 cut(s)	682
GsaI	CCCAGC	1 cut(s)	944
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	684
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	504, 909
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	683
Hin1II	CATG	4 cut(s)	342, 539, 575, 838
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	6 cut(s)	57, 500, 695, 764, 794, 951
HpaII	CCGG	2 cut(s)	504, 909
HphI	GGTGA	3 cut(s)	347, 698, 911
Hpy166II	GTNNAC	2 cut(s)	240, 389
Hpy188I	TCNGA	7 cut(s)	149, 202, 446, 520, 801, 848, 956
Hpy188III	TCNNGA	7 cut(s)	38, 210, 254, 547, 703, 781, 909
Hpy8I	GTNNAC	2 cut(s)	240, 389
HpyAV	CCTTC	2 cut(s)	42, 68
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	6 cut(s)	128, 227, 344, 422, 723, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 281, 937
HpyF3I	CTNAG	5 cut(s)	11, 443, 587, 611, 825
Hsp92II	CATG	4 cut(s)	342, 539, 575, 838
HspAI	GCGC	1 cut(s)	681
Kpn2I	TCCGGA	1 cut(s)	908
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	3 cut(s)	247, 562, 837
LmnI	GCTCC	1 cut(s)	944
LweI	GCATC	4 cut(s)	214, 253, 353, 431
MaeI	CTAG	3 cut(s)	326, 455, 494
MaeIII	GTNAC	2 cut(s)	629, 899
MalI	GATC	3 cut(s)	249, 564, 839
MboI	GATC	3 cut(s)	247, 562, 837
MboII	GAAGA	4 cut(s)	307, 310, 803, 896
MhlI	GDGCHC	2 cut(s)	473, 780
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	231, 673, 714, 743
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	51, 773, 803
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	908
MroXI	GAANNNNTTC	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	669, 759, 894
MslI	CAYNNNNRTG	2 cut(s)	123, 570
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	504, 909
MspR9I	CCNGG	2 cut(s)	662, 881
Mva1269I	GAATGC	2 cut(s)	130, 404
MvaI	CCWGG	2 cut(s)	662, 881
MwoI	GCNNNNNNNGC	3 cut(s)	272, 281, 937
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	3 cut(s)	247, 562, 837
NlaIII	CATG	4 cut(s)	342, 539, 575, 838
NmeAIII	GCCGAG	1 cut(s)	845
NmuCI	GTSAC	1 cut(s)	899
NspI	RCATGY	1 cut(s)	342
PctI	GAATGC	2 cut(s)	130, 404
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	500, 695, 951
PflMI	CCANNNNNTGG	1 cut(s)	364
PleI	GAGTC	3 cut(s)	51, 772, 802
PpsI	GAGTC	3 cut(s)	51, 772, 802
PshBI	ATTAAT	1 cut(s)	759
Psp124BI	GAGCTC	1 cut(s)	473
Psp6I	CCWGG	2 cut(s)	660, 879
PspFI	CCCAGC	1 cut(s)	940
PspGI	CCWGG	2 cut(s)	660, 879
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	18, 111
RsaNI	GTAC	2 cut(s)	17, 110
RseI	CAYNNNNRTG	2 cut(s)	123, 570
SacI	GAGCTC	1 cut(s)	473
SaqAI	TTAA	3 cut(s)	669, 759, 894
Sau3AI	GATC	3 cut(s)	247, 562, 837
SchI	GAGTC	3 cut(s)	51, 773, 803
ScrFI	CCNGG	2 cut(s)	662, 881
SduI	GDGCHC	2 cut(s)	473, 780
SfaNI	GCATC	4 cut(s)	214, 253, 353, 431
SmiMI	CAYNNNNRTG	2 cut(s)	123, 570
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	231, 673, 714, 743
SspMI	CTAG	3 cut(s)	326, 455, 494
SstI	GAGCTC	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	660, 879
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	1 cut(s)	50
TasI	AATT	4 cut(s)	231, 673, 714, 743
TfiI	GAWTC	3 cut(s)	500, 695, 951
Tru1I	TTAA	3 cut(s)	669, 759, 894
Tru9I	TTAA	3 cut(s)	669, 759, 894
TscAI	CASTG	3 cut(s)	291, 375, 531
TseFI	GTSAC	1 cut(s)	899
Tsp45I	GTSAC	1 cut(s)	899
TspDTI	ATGAA	2 cut(s)	552, 804
TspGWI	ACGGA	2 cut(s)	101, 800
TspRI	CASTG	3 cut(s)	291, 375, 531
Van91I	CCANNNNNTGG	1 cut(s)	364
VspI	ATTAAT	1 cut(s)	759
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	3 cut(s)	326, 455, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.