AT2G38960

endoplasmic reticulum

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
16265286 .. 16268334
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38960.2

Sequence Viewer

Length: 1419 bp
ATGGCGGAGACGGACGTCGGAAGTGTGAAGGGGAAGGAGAAAGGATCGGGAAAGCGCTGGATTTTGCTGATCGGAGCTATAGCTGCCGTTCTGTTAGCCGTCGTGGTCGCTGTGTTTTTGAATACTCAGAATTCGTCGATTTCTGAATTTACCGGAAAAATATGCAATTGCCGTCAGGCTGAGCAGCAGAAGTACATTGGGATAGTTGAAGATTGTTGTTGTGATTATGAAACTGTGAATCGGCTAAACACGGAAGTGTTGAATCCATTGCTTCAGGACCTTGTTAAGACACCATTTTACAGATATTTCAAGGTTAAACTGTGGTGTGATTGCCCGTTTTGGCCTGATGATGGCATGTGCCGGTTAAGAGACTGCAGTGTTTGTGAATGTCCTGAAAGCGAGTTCCCTGAAGTATTTAAGAAGCCATTAAGTCAATACAATCCTGTTTGTCAAGAGGGGAAACCGCAAGCTACTGTTGATCGTACCTTGGATACTAGAGCTTTTAGGGGTTGGACAGTCACAGACAATCCCTGGACCAGTGATGATGAAACTGACAATGATGAAATGACATATGTTAATCTTCGGCTTAATCCTGAACGGTACACTGGCTATATTGGCCCATCAGCTAGAAGGATATGGGAAGCTATATACTCTGAGAACTGTCCCAAACATACATCTGAAGGATCTTGCCAAGAAGAGAAGATCTTGTACAAATTGGTTTCTGGTCTTCACTCATCCATTTCAGTTCATATCGCTTCAGATTATTTACTTGATGAAGCTACAAACTTGTGGGGTCAAAACCTGACGTTGTTGTATGATCGTGTGTTAAGATACCCAGACCGCGTTCAGAACCTATACTTCACATTTTTGTTCGTTCTTAGAGCAGTAACAAAGGCAGAAGATTACTTGGGAGAGGCTGAATATGAGACTGGTAATGTGATTGAGGACTTGAAGACCAAATCTCTGGTGAAGCAAGTAGTTAGTGACCCCAAAACTAAAGCAGCTTGTCCAGTACCATTTGATGAAGCAAAGCTCTGGAAAGGCCAACGTGGACCAGAACTGAAGCAACAATTAGAAAAACAATTCAGAAACATAAGTGCAATAATGGACTGTGTAGGCTGTGAGAAATGCCGTCTATGGGGAAAGCTTCAGATTCTCGGTCTCGGTACTGCATTGAAAATTCTATTCACTGTCAATGGTGAAGACAATTTGCGTCATAATCTCGAATTGCAAAGGAACGAAGTGATTGCGCTGATGAATCTTCTCCACCGATTATCTGAATCCGTGAAGTATGTTCATGACATGAGTCCTGCGGCCGAGAGAATCGCAGGTGGACATGCCTCTTCAGGGAACAGCTTTTGGCAAAGAATAGTGACATCTATAGCGCAATCAAAAGCTGTATCTGGGAAGAGAAGCTAG

Protein Analysis

472

Amino Acids

53.45

Weight (kDa)

6.08

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERO1 PF04137 87 - 437 4.3e-119 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1319
AatII GACGTC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 1319
AccII CGCG 1 cut(s) 843
AciI CCGC 4 cut(s) 5, 464, 841, 1313
AclWI GGATC 2 cut(s) 52, 691
AcoI YGGCCR 1 cut(s) 1314
AcsI RAATTY 3 cut(s) 130, 146, 1179
AcuI CTGAAG 7 cut(s) 257, 429, 699, 741, 1082, 1133, 1329
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 6 cut(s) 194, 484, 602, 710, 1014, 1168
AfeI AGCGCT 1 cut(s) 56
AfiI CCNNNNNNNGG 3 cut(s) 350, 1138, 1347
AgsI TTSAA 6 cut(s) 121, 209, 262, 310, 952, 1177
AjnI CCWGG 1 cut(s) 530
AleI CACNNNNGTG 1 cut(s) 254
Alw26I GTCTC 4 cut(s) 2, 363, 920, 1166
AlwI GGATC 2 cut(s) 52, 691
Aor51HI AGCGCT 1 cut(s) 56
AoxI GGCC 4 cut(s) 341, 616, 1042, 1314
ApeKI GCWGC 3 cut(s) 83, 184, 1001
ApoI RAATTY 3 cut(s) 130, 146, 1179
AspLEI GCGC 3 cut(s) 57, 1252, 1387
AspS9I GGNCC 4 cut(s) 277, 534, 617, 1052
AsuHPI GGTGA 2 cut(s) 979, 1211
AvaII GGWCC 3 cut(s) 277, 534, 1052
BarI GAAGNNNNNNTAC 2 cut(s) 692, 724
BbsI GAAGAC 3 cut(s) 719, 959, 1209
BbvI GCAGC 3 cut(s) 70, 196, 1013
BccI CCATC 2 cut(s) 344, 628
BceAI ACGGC 4 cut(s) 71, 83, 156, 1116
BcgI CGANNNNNNTGC 2 cut(s) 1229, 1263
BciT130I CCWGG 1 cut(s) 532
BciVI GTATCC 1 cut(s) 484
BcoDI GTCTC 4 cut(s) 2, 363, 920, 1166
BfaI CTAG 3 cut(s) 495, 627, 1417
BfmI CTRYAG 3 cut(s) 78, 373, 1380
BfoI RGCGCY 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 1319
BfuI GTATCC 1 cut(s) 484
BglII AGATCT 1 cut(s) 702
BisI GCNGC 4 cut(s) 84, 185, 1002, 1314
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 4 cut(s) 85, 186, 1003, 1315
Bme1390I CCNGG 1 cut(s) 532
Bme18I GGWCC 3 cut(s) 277, 534, 1052
BmgT120I GGNCC 4 cut(s) 277, 534, 617, 1052
BmrFI CCNGG 1 cut(s) 532
BoxI GACNNNNGTC 2 cut(s) 14, 1305
BpiI GAAGAC 3 cut(s) 719, 959, 1209
Bpu1102I GCTNAGC 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 1166
BsaJI CCNNGG 2 cut(s) 486, 530
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 1138, 1347
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 4 cut(s) 537, 610, 934, 1010
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 532
BseDI CCNNGG 2 cut(s) 486, 530
BseGI GGATG 1 cut(s) 734
BseLI CCNNNNNNNGG 3 cut(s) 350, 1138, 1347
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 3 cut(s) 140, 171, 645
BseNI ACTGG 4 cut(s) 537, 610, 934, 1010
BseX3I CGGCCG 1 cut(s) 1314
BseXI GCAGC 3 cut(s) 70, 196, 1013
Bsh1236I CGCG 1 cut(s) 843
Bsh1285I CGRYCG 1 cut(s) 1317
BshFI GGCC 4 cut(s) 343, 618, 1044, 1316
BsiEI CGRYCG 1 cut(s) 1317
BsiSI CCGG 2 cut(s) 153, 361
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 3 cut(s) 350, 1138, 1347
BsmAI GTCTC 4 cut(s) 2, 363, 920, 1166
BsmBI CGTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 648
BsnI GGCC 4 cut(s) 343, 618, 1044, 1316
Bso31I GGTCTC 1 cut(s) 1166
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 6 cut(s) 44, 69, 478, 683, 702, 817
Bsp1720I GCTNAGC 1 cut(s) 180
BspACI CCGC 4 cut(s) 5, 464, 841, 1313
BspANI GGCC 4 cut(s) 343, 618, 1044, 1316
BspCNI CTCAG 3 cut(s) 139, 172, 646
BspFNI CGCG 1 cut(s) 843
BspHI TCATGA 1 cut(s) 1297
BspMAI CTGCAG 1 cut(s) 377
BspMI ACCTGC 1 cut(s) 1319
BspPI GGATC 2 cut(s) 52, 691
BspTNI GGTCTC 1 cut(s) 1166
BsrDI GCAATG 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 360
BsrGI TGTACA 1 cut(s) 708
BsrI ACTGG 4 cut(s) 537, 610, 934, 1010
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 2 cut(s) 486, 530
BssMI GATC 6 cut(s) 44, 69, 478, 683, 702, 817
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 8 cut(s) 235, 321, 475, 517, 600, 662, 1112, 1192
Bst6I CTCTTC 3 cut(s) 690, 1348, 1403
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 708
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 4 cut(s) 126, 180, 654, 878
BstF5I GGATG 1 cut(s) 734
BstFNI CGCG 1 cut(s) 843
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 3 cut(s) 57, 1252, 1387
BstKTI GATC 6 cut(s) 47, 72, 481, 686, 705, 820
BstMAI GTCTC 4 cut(s) 2, 363, 920, 1166
BstMBI GATC 6 cut(s) 44, 69, 478, 683, 702, 817
BstMCI CGRYCG 1 cut(s) 1317
BstMWI GCNNNNNNNGC 2 cut(s) 83, 615
BstNI CCWGG 1 cut(s) 532
BstNSI RCATGY 2 cut(s) 358, 1340
BstPAI GACNNNNGTC 2 cut(s) 14, 1305
BstSCI CCNGG 1 cut(s) 530
BstSFI CTRYAG 3 cut(s) 78, 373, 1380
BstUI CGCG 1 cut(s) 843
BstV1I GCAGC 3 cut(s) 70, 196, 1013
BstV2I GAAGAC 3 cut(s) 719, 959, 1209
BstX2I RGATCY 2 cut(s) 683, 702
BstXI CCANNNNNNTGG 1 cut(s) 964
BstYI RGATCY 2 cut(s) 683, 702
BstZI CGGCCG 1 cut(s) 1314
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 4 cut(s) 343, 618, 1044, 1316
BtsCI GGATG 1 cut(s) 734
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 4 cut(s) 382, 544, 603, 1188
BveI ACCTGC 1 cut(s) 1319
Cac8I GCNNGC 1 cut(s) 468
CciI TCATGA 1 cut(s) 1297
CfoI GCGC 3 cut(s) 57, 1252, 1387
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 4 cut(s) 277, 534, 617, 1052
CseI GACGC 1 cut(s) 1202
Csp6I GTAC 6 cut(s) 193, 483, 601, 709, 1013, 1167
CviAII CATG 4 cut(s) 355, 1298, 1303, 1337
CviQI GTAC 6 cut(s) 193, 483, 601, 709, 1013, 1167
DdeI CTNAG 4 cut(s) 126, 180, 654, 878
DpnI GATC 6 cut(s) 46, 71, 480, 685, 704, 819
DpnII GATC 6 cut(s) 44, 69, 478, 683, 702, 817
EaeI YGGCCR 1 cut(s) 1314
EagI CGGCCG 1 cut(s) 1314
Eam1104I CTCTTC 3 cut(s) 690, 1348, 1403
EarI CTCTTC 3 cut(s) 690, 1348, 1403
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 1314
Eco130I CCWWGG 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 1166
Eco47I GGWCC 3 cut(s) 277, 534, 1052
Eco47III AGCGCT 1 cut(s) 56
Eco52I CGGCCG 1 cut(s) 1314
Eco57I CTGAAG 7 cut(s) 257, 429, 699, 741, 1082, 1133, 1329
EcoO109I RGGNCCY 1 cut(s) 277
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 4 cut(s) 358, 1301, 1306, 1340
FaqI GGGAC 1 cut(s) 648
FatI CATG 4 cut(s) 354, 1297, 1302, 1336
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 4 cut(s) 84, 185, 1002, 1314
FokI GGATG 1 cut(s) 721
Fsp4HI GCNGC 4 cut(s) 84, 185, 1002, 1314
FspBI CTAG 3 cut(s) 495, 627, 1417
GlaI GCGC 3 cut(s) 56, 1251, 1386
GluI GCNGC 4 cut(s) 84, 185, 1002, 1314
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 4 cut(s) 343, 618, 1044, 1316
HapII CCGG 2 cut(s) 153, 361
HgaI GACGC 1 cut(s) 1202
HhaI GCGC 3 cut(s) 57, 1252, 1387
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 358, 1301, 1306, 1340
Hin6I GCGC 3 cut(s) 55, 1250, 1385
HinP1I GCGC 3 cut(s) 55, 1250, 1385
HindIII AAGCTT 1 cut(s) 1145
HinfI GANTC 7 cut(s) 238, 262, 1153, 1258, 1280, 1306, 1323
HpaII CCGG 2 cut(s) 153, 361
HphI GGTGA 2 cut(s) 979, 1211
Hpy166II GTNNAC 3 cut(s) 603, 1052, 1334
Hpy188III TCNNGA 8 cut(s) 48, 275, 392, 452, 593, 1036, 1223, 1298
Hpy8I GTNNAC 3 cut(s) 603, 1052, 1334
Hpy99I CGWCG 3 cut(s) 20, 104, 139
HpyAV CCTTC 4 cut(s) 22, 28, 624, 674
HpyCH4III ACNGT 8 cut(s) 235, 321, 475, 517, 600, 662, 1112, 1192
HpyCH4IV ACGT 3 cut(s) 15, 806, 1048
HpyCH4V TGCA 5 cut(s) 165, 375, 1100, 1172, 1231
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 615
HpyF3I CTNAG 4 cut(s) 126, 180, 654, 878
HpySE526I ACGT 3 cut(s) 15, 806, 1048
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 358, 1301, 1306, 1340
HspAI GCGC 3 cut(s) 55, 1250, 1385
Kzo9I GATC 6 cut(s) 44, 69, 478, 683, 702, 817
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 3 cut(s) 70, 196, 1013
MaeI CTAG 3 cut(s) 495, 627, 1417
MaeII ACGT 3 cut(s) 15, 806, 1048
MaeIII GTNAC 4 cut(s) 517, 886, 983, 1372
MalI GATC 6 cut(s) 46, 71, 480, 685, 704, 819
MboI GATC 6 cut(s) 44, 69, 478, 683, 702, 817
MfeI CAATTG 1 cut(s) 166
MflI RGATCY 2 cut(s) 683, 702
MluCI AATT 9 cut(s) 130, 146, 166, 713, 1070, 1082, 1179, 1207, 1226
MlyI GAGTC 1 cut(s) 1315
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 4 cut(s) 448, 907, 937, 1351
MseI TTAA 8 cut(s) 285, 315, 365, 417, 428, 576, 588, 827
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 2 cut(s) 153, 361
MspR9I CCNGG 1 cut(s) 532
MunI CAATTG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 532
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 2 cut(s) 83, 615
NdeI CATATG 1 cut(s) 571
NdeII GATC 6 cut(s) 44, 69, 478, 683, 702, 817
NlaIII CATG 4 cut(s) 358, 1301, 1306, 1340
NmeAIII GCCGAG 1 cut(s) 1342
NmuCI GTSAC 3 cut(s) 517, 983, 1372
NspI RCATGY 2 cut(s) 358, 1340
OliI CACNNNNGTG 1 cut(s) 254
PagI TCATGA 1 cut(s) 1297
PaqCI CACCTGC 1 cut(s) 1319
PfeI GAWTC 6 cut(s) 238, 262, 1153, 1258, 1280, 1323
PkrI GCNGC 4 cut(s) 85, 186, 1003, 1315
PleI GAGTC 1 cut(s) 1314
PpsI GAGTC 1 cut(s) 1314
PpuMI RGGWCCY 1 cut(s) 277
PshAI GACNNNNGTC 2 cut(s) 14, 1305
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 530
PspGI CCWGG 1 cut(s) 530
PspPI GGNCC 4 cut(s) 277, 534, 617, 1052
PspPPI RGGWCCY 1 cut(s) 277
PstI CTGCAG 1 cut(s) 377
PsuI RGATCY 2 cut(s) 683, 702
RsaI GTAC 6 cut(s) 194, 484, 602, 710, 1014, 1168
RsaNI GTAC 6 cut(s) 193, 483, 601, 709, 1013, 1167
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 8 cut(s) 285, 315, 365, 417, 428, 576, 588, 827
SatI GCNGC 4 cut(s) 84, 185, 1002, 1314
Sau3AI GATC 6 cut(s) 44, 69, 478, 683, 702, 817
Sau96I GGNCC 4 cut(s) 277, 534, 617, 1052
SchI GAGTC 1 cut(s) 1315
ScrFI CCNGG 1 cut(s) 532
SfcI CTRYAG 3 cut(s) 78, 373, 1380
SinI GGWCC 3 cut(s) 277, 534, 1052
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 9 cut(s) 130, 146, 166, 713, 1070, 1082, 1179, 1207, 1226
SsiI CCGC 4 cut(s) 5, 464, 841, 1313
SspMI CTAG 3 cut(s) 495, 627, 1417
StyD4I CCNGG 1 cut(s) 530
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 8 cut(s) 235, 321, 475, 517, 600, 662, 1112, 1192
TaiI ACGT 3 cut(s) 18, 809, 1051
TaqI TCGA 2 cut(s) 137, 1224
TaqII GACCGA 1 cut(s) 1148
TasI AATT 9 cut(s) 130, 146, 166, 713, 1070, 1082, 1179, 1207, 1226
TatI WGTACW 2 cut(s) 192, 708
TauI GCSGC 1 cut(s) 1316
TfiI GAWTC 6 cut(s) 238, 262, 1153, 1258, 1280, 1323
Tru1I TTAA 8 cut(s) 285, 315, 365, 417, 428, 576, 588, 827
Tru9I TTAA 8 cut(s) 285, 315, 365, 417, 428, 576, 588, 827
TscAI CASTG 4 cut(s) 382, 544, 610, 1195
TseFI GTSAC 3 cut(s) 517, 983, 1372
TseI GCWGC 3 cut(s) 83, 184, 1001
Tsp45I GTSAC 3 cut(s) 517, 983, 1372
TspDTI ATGAA 8 cut(s) 243, 561, 576, 737, 789, 1038, 1271, 1286
TspGWI ACGGA 3 cut(s) 26, 266, 1273
TspRI CASTG 4 cut(s) 382, 544, 610, 1195
VpaK11BI GGWCC 3 cut(s) 277, 534, 1052
XapI RAATTY 3 cut(s) 130, 146, 1179
XceI RCATGY 2 cut(s) 358, 1340
XspI CTAG 3 cut(s) 495, 627, 1417
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.