Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001283.1

Orthogroup ID

OG0008284

Physical Location & Seq

Genomic Coordinates Forward (+)

3385 .. 6198

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001283.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atggtgggggagaagagtaaaggaaaacaatggggttgggtggtgggagctgtgatcgctctgttggttgctgtggctttgagctctgcacccaaaactgctctctttggttcctccaacaagccctgtaattgtactcagggtgccaataagtatagtgggatagtggaggattgttgttgtgattatgagactgtggaccggcttaacaaggaagttctgcacccctcgctacaagagcttgttaaaaactccgttttttgggttaagttatggtgtgactgccccttctggcctgatgatggtatgtgccggctgagagattgcagtgtatgcgaatgtccagatagtgaattccccgaatcgtttaagaaacctaaccatggccttcctggggataatcctatctgtcaagaaggaaagcatgaggctgctgttgaccgtacgctagatagaaaagctttcagaggctggacagaaatagacaatccctggacaaatgacgatgagactgacaacgatccatctgaagagttatgctatgaggaaagaattctgtacaagttgatatctggtcttcattcatcaatttcagtccacatagcgtcagattatttacttgatgaaactacacagacgtggggccaaaatctctcattgatgtatgatcgggtcctaagataccctgatcgtgcagcaggttacttggaacatgctgaatataacactggtaatcatactgaatatctgaagacacaatccctgacaaaacagctgctctataatcccaaattacaagctgcatgcccaatcccatttgatgaagctaaattgtggaaaggccagagtggtcctgaactgaagcagaatacagaaacagttcagaaacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

297

Amino Acids

33.57

Weight (kDa)

5.1

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38960 AT2G38960 AT2G38960
fragaria_vesca	FvH4_3g05200 FvH4_3g05200
malus_domestica	MD05G1280900.v1.1 MD10G1259300.v1.1
prunus_persica	Prupe.4G084000_v2.0.a1 Prupe.4G084000_v2.0.a1 Prupe.4G084000_v2.0.a1
pyrus_communis	pycom05g26110 pycom10g21580
rosa_chinensis	RchiOBHm_Chr5g0014551
rosa_laevigata	RLG00000032127
rosa_multiflora	Rmu_sc0000120.1_g000002 Rmu_sc0001283.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061930
rosa_rugosa	Rorug05G0019300
rosa_samantha	Rh5AG114500 Rh5BG111400 Rh5CG122900 Rh5DG110800
rosa_wichuraiana	Rw5G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	515
AcsI	RAATTY	2 cut(s)	353, 552
AcuI	CTGAAG	3 cut(s)	549, 770, 881
AfaI	GTAC	3 cut(s)	136, 445, 560
AfiI	CCNNNNNNNGG	4 cut(s)	261, 302, 383, 394
AjiI	CACGTC	1 cut(s)	639
AjnI	CCWGG	2 cut(s)	391, 491
AleI	CACNNNNGTG	1 cut(s)	637
AluBI	AGCT	7 cut(s)	50, 84, 241, 461, 775, 800, 827
AluI	AGCT	7 cut(s)	50, 84, 241, 461, 775, 800, 827
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	185, 503
AlwI	GGATC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	471
AoxI	GGCC	4 cut(s)	293, 385, 643, 841
ApeKI	GCWGC	4 cut(s)	431, 695, 775, 800
ApoI	RAATTY	2 cut(s)	353, 552
Asp700I	GAANNNNTTC	2 cut(s)	552, 879
AspS9I	GGNCC	4 cut(s)	199, 643, 673, 851
AvaII	GGWCC	3 cut(s)	199, 673, 851
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	2 cut(s)	569, 758
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	4 cut(s)	418, 707, 762, 787
BccI	CCATC	2 cut(s)	296, 532
BciT130I	CCWGG	2 cut(s)	393, 493
BcoDI	GTCTC	2 cut(s)	185, 503
BfaI	CTAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	689
BisI	GCNGC	4 cut(s)	432, 696, 776, 801
BlsI	GCNGC	4 cut(s)	433, 697, 777, 802
Bme1390I	CCNGG	2 cut(s)	393, 493
Bme18I	GGWCC	3 cut(s)	199, 673, 851
BmgBI	CACGTC	1 cut(s)	639
BmgT120I	GGNCC	4 cut(s)	199, 643, 673, 851
BmiI	GGNNCC	4 cut(s)	112, 145, 644, 674
BmrFI	CCNGG	2 cut(s)	393, 493
BpiI	GAAGAC	2 cut(s)	569, 758
BsaJI	CCNNGG	3 cut(s)	382, 392, 491
Bsc4I	CCNNNNNNNGG	4 cut(s)	261, 302, 383, 394
Bse118I	RCCGGY	2 cut(s)	201, 312
Bse1I	ACTGG	1 cut(s)	733
BseBI	CCWGG	2 cut(s)	393, 493
BseDI	CCNNGG	3 cut(s)	382, 392, 491
BseLI	CCNNNNNNNGG	4 cut(s)	261, 302, 383, 394
BseMII	CTCAG	2 cut(s)	152, 308
BseNI	ACTGG	1 cut(s)	733
BseXI	GCAGC	4 cut(s)	418, 707, 762, 787
BsgI	GTGCAG	3 cut(s)	72, 206, 714
BshFI	GGCC	4 cut(s)	295, 387, 645, 843
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	202, 313
BsiWI	CGTACG	1 cut(s)	443
BslI	CCNNNNNNNGG	4 cut(s)	261, 302, 383, 394
BsmAI	GTCTC	2 cut(s)	185, 503
BsnI	GGCC	4 cut(s)	295, 387, 645, 843
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	54, 520, 667, 688
Bsp19I	CCATGG	1 cut(s)	382
BspANI	GGCC	4 cut(s)	295, 387, 645, 843
BspCNI	CTCAG	2 cut(s)	151, 309
BspLI	GGNNCC	4 cut(s)	112, 145, 644, 674
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	1 cut(s)	515
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	2 cut(s)	201, 312
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	733
BssAI	RCCGGY	2 cut(s)	201, 312
BssECI	CCNNGG	3 cut(s)	382, 392, 491
BssMI	GATC	4 cut(s)	54, 520, 667, 688
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	393, 493
Bst4CI	ACNGT	3 cut(s)	196, 443, 880
Bst6I	CTCTTC	2 cut(s)	8, 525
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	314, 805
BstDEI	CTNAG	3 cut(s)	138, 317, 677
BstDSI	CCRYGG	1 cut(s)	382
BstKTI	GATC	4 cut(s)	57, 523, 670, 691
BstMAI	GTCTC	2 cut(s)	185, 503
BstMBI	GATC	4 cut(s)	54, 520, 667, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 229, 238, 333
BstNI	CCWGG	2 cut(s)	393, 493
BstNSI	RCATGY	2 cut(s)	716, 807
BstSCI	CCNGG	2 cut(s)	391, 491
BstV1I	GCAGC	4 cut(s)	418, 707, 762, 787
BstV2I	GAAGAC	2 cut(s)	569, 758
BsuRI	GGCC	4 cut(s)	295, 387, 645, 843
BtgI	CCRYGG	1 cut(s)	382
BtrI	CACGTC	1 cut(s)	639
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	334, 726
BveI	ACCTGC	1 cut(s)	689
Cac8I	GCNNGC	2 cut(s)	314, 805
CaiI	CAGNNNCTG	1 cut(s)	471
Cfr10I	RCCGGY	2 cut(s)	201, 312
Cfr13I	GGNCC	4 cut(s)	199, 643, 673, 851
CseI	GACGC	1 cut(s)	594
Csp6I	GTAC	3 cut(s)	135, 444, 559
CviAII	CATG	4 cut(s)	383, 425, 713, 804
CviQI	GTAC	3 cut(s)	135, 444, 559
DdeI	CTNAG	3 cut(s)	138, 317, 677
DpnI	GATC	4 cut(s)	56, 522, 669, 690
DpnII	GATC	4 cut(s)	54, 520, 667, 688
Eam1104I	CTCTTC	2 cut(s)	8, 525
EarI	CTCTTC	2 cut(s)	8, 525
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	570
Eco47I	GGWCC	3 cut(s)	199, 673, 851
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	3 cut(s)	549, 770, 881
EcoICRI	GAGCTC	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	673
EcoRI	GAATTC	2 cut(s)	353, 552
EcoRII	CCWGG	2 cut(s)	391, 491
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	4 cut(s)	386, 428, 716, 807
FatI	CATG	4 cut(s)	382, 424, 712, 803
Fnu4HI	GCNGC	4 cut(s)	432, 696, 776, 801
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	4 cut(s)	432, 696, 776, 801
FspBI	CTAG	1 cut(s)	449
GluI	GCNGC	4 cut(s)	432, 696, 776, 801
HaeIII	GGCC	4 cut(s)	295, 387, 645, 843
HapII	CCGG	2 cut(s)	202, 313
HgaI	GACGC	1 cut(s)	594
Hin1II	CATG	4 cut(s)	386, 428, 716, 807
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	2 cut(s)	202, 313
Hpy166II	GTNNAC	3 cut(s)	199, 439, 598
Hpy188I	TCNGA	5 cut(s)	467, 529, 610, 750, 885
Hpy188III	TCNNGA	3 cut(s)	344, 413, 854
Hpy8I	GTNNAC	3 cut(s)	199, 439, 598
HpyAV	CCTTC	3 cut(s)	298, 398, 410
HpyCH4III	ACNGT	3 cut(s)	196, 443, 880
HpyCH4IV	ACGT	1 cut(s)	638
HpyCH4V	TGCA	5 cut(s)	89, 223, 327, 695, 803
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 229, 238, 333
HpyF3I	CTNAG	3 cut(s)	138, 317, 677
HpySE526I	ACGT	1 cut(s)	638
Hsp92II	CATG	4 cut(s)	386, 428, 716, 807
KroI	GCCGGC	1 cut(s)	312
KroNI	GCCGGC	1 cut(s)	314
Kzo9I	GATC	4 cut(s)	54, 520, 667, 688
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	4 cut(s)	418, 707, 762, 787
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	638
MaeIII	GTNAC	2 cut(s)	278, 701
MalI	GATC	4 cut(s)	56, 522, 669, 690
MboI	GATC	4 cut(s)	54, 520, 667, 688
MboII	GAAGA	4 cut(s)	25, 542, 569, 763
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	6 cut(s)	130, 353, 552, 588, 791, 830
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	124, 163, 238, 421, 461, 538
MroNI	GCCGGC	1 cut(s)	312
MroXI	GAANNNNTTC	2 cut(s)	552, 879
MseI	TTAA	4 cut(s)	207, 246, 267, 369
MslI	CAYNNNNRTG	1 cut(s)	637
MspA1I	CMGCKG	1 cut(s)	775
MspI	CCGG	2 cut(s)	202, 313
MspR9I	CCNGG	2 cut(s)	393, 493
MvaI	CCWGG	2 cut(s)	393, 493
MwoI	GCNNNNNNNGC	4 cut(s)	56, 229, 238, 333
NaeI	GCCGGC	1 cut(s)	314
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	4 cut(s)	54, 520, 667, 688
NgoMIV	GCCGGC	1 cut(s)	312
NlaIII	CATG	4 cut(s)	386, 428, 716, 807
NlaIV	GGNNCC	4 cut(s)	112, 145, 644, 674
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	2 cut(s)	716, 807
OliI	CACNNNNGTG	1 cut(s)	637
PaeI	GCATGC	1 cut(s)	807
PdiI	GCCGGC	1 cut(s)	314
PdmI	GAANNNNTTC	2 cut(s)	552, 879
PfeI	GAWTC	1 cut(s)	362
Pfl23II	CGTACG	1 cut(s)	443
PkrI	GCNGC	4 cut(s)	433, 697, 777, 802
PpuMI	RGGWCCY	1 cut(s)	673
Psp124BI	GAGCTC	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	673
Psp6I	CCWGG	2 cut(s)	391, 491
PspGI	CCWGG	2 cut(s)	391, 491
PspLI	CGTACG	1 cut(s)	443
PspN4I	GGNNCC	4 cut(s)	112, 145, 644, 674
PspPI	GGNCC	4 cut(s)	199, 643, 673, 851
PspPPI	RGGWCCY	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	775
RsaI	GTAC	3 cut(s)	136, 445, 560
RsaNI	GTAC	3 cut(s)	135, 444, 559
RseI	CAYNNNNRTG	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	4 cut(s)	207, 246, 267, 369
SatI	GCNGC	4 cut(s)	432, 696, 776, 801
Sau3AI	GATC	4 cut(s)	54, 520, 667, 688
Sau96I	GGNCC	4 cut(s)	199, 643, 673, 851
ScrFI	CCNGG	2 cut(s)	393, 493
SduI	GDGCHC	1 cut(s)	86
SinI	GGWCC	3 cut(s)	199, 673, 851
SmiMI	CAYNNNNRTG	1 cut(s)	637
SphI	GCATGC	1 cut(s)	807
Sse9I	AATT	6 cut(s)	130, 353, 552, 588, 791, 830
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	391, 491
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	196, 443, 880
TaiI	ACGT	1 cut(s)	641
TasI	AATT	6 cut(s)	130, 353, 552, 588, 791, 830
TatI	WGTACW	2 cut(s)	134, 558
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	4 cut(s)	207, 246, 267, 369
Tru9I	TTAA	4 cut(s)	207, 246, 267, 369
TscAI	CASTG	2 cut(s)	334, 733
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	4 cut(s)	431, 695, 775, 800
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	4 cut(s)	569, 573, 639, 837
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	334, 733
VpaK11BI	GGWCC	3 cut(s)	199, 673, 851
XapI	RAATTY	2 cut(s)	353, 552
XceI	RCATGY	2 cut(s)	716, 807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XmnI	GAANNNNTTC	2 cut(s)	552, 879
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.