Rroxscaffold_1G00061930

Endoplasmic

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
83952846 .. 83957362
4517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061930.1

Sequence Viewer

Length: 1533 bp
ATGGTGAGAGAGAAGAGCAAAGGAAAGCGATGGGGCTGGGTGGTGGGAGCTGTGATCGCTCTGTTGGTTGCTGTGGCTTTGAGCTCTGCACCCAAAATTGCTCTCTTTGGTTCCTCCAATAAGCCCTGTAATTGTACTCAGGGTGCCAATAAGTATAGTGGGATAGTGGAGGATTGTTGTTGTGATTATGAGACTGTGGACCGGCTTAACAAGGAAGTTCTGCACCCCTCGCTACAAGAGCTTGTTAAAACTCCCTTTTTTCGGTATTTCAAGGTTAAGCTATGGTGTGACTGCCCTTTCTGGCCTGATGATGGTATGTGCCGGCTGAGAGATTGCAGCGTATGTGAATGTCCAGATAGTGAATTCCCCGAATCGTTTAAGAAACCCAACCATGGCCTTCCTGGGGATAATCCTATCTGTCAAGAAGGAAAGCCTGAGGCTGCTGTTGACCGTACGCTAGATAGAAAAGCTTTCAGAGGCTGGACAGAAATAGACAATCCCTGGACAAATGACGATGAGACTGACAACGCGGATTTAAATGCAGCTGAGATGACGTATGTGAATCTTCAACTAAATCCTGAGCGATACACTGGCTACACTGGTCCATCTGCTAGAAGGATATGGGATGCTGTCTATGCAGAGAACTGCCCCAAGTATCCATCTGAAGAGTTATGCTATGAGGAAAGAATTCTGTACAAGTTGATATCTGGTCTTCATTCGTCAATTTCAGTCCACATAGCGTCAGATTATTTACTTGATGAAACTACACAGACGTGGGGCCAAAATCTCTCATTGATGTATGATCGGGTCCTAAGATACCCTGATCGTGTCAGAAACTTGTATTTCACATATCTCTTCGTTCTTCGAGCTGTGACAAAGGCAGCAGATTACTTGGAACATGCTGAATATGACACCAGGAATCATACTGAAGATCTGAAGACACAATCCCTGACAAAACAGCTACTCTATAATCCCAAATTACAAGCTGCATGCCCAATCCCATTTGATGAAGCTAAATTGTGGAAAGGCCAGAGTGGTCCTGAACTGAAGCAGAAAATACAGAAACAGTTCAGAAACATTAGTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGGCTGTGGGGGAAGCTTCAGGTCCTTGGTCTTGGCACTGCACTTAAAATCCTCTTCTCTGTTGATGGTCAACCAAACTCCCATCAGAATCTGCAGTTGCAACGGAATGAAGTGATTGCCTTGATAAACCTGCTCAATCGACTCTCAGAATCTGTCAAGTTTGTTCATGAAATGGGACCTTCAGCTGAAATAGAAGCACAGGGGTCTGCACCCACTTCCACAAATTGCCCGTTGCAAAGGATGTGGGCATCATTGTTCAATAGACCTCCTCCAAATTGCCCGCTGAAGCGGATGTGGAAATCGATATCGGACAAGCCTCCTCCAAATTGCCCGCTGCAGCGGATGTGGAAATCGATATCTGACAAGCCTCCGCCAAGTTGCCCATTGCAGAGGATTTGGGCATCAATAAACGGATGA

Protein Analysis

510

Amino Acids

58.02

Weight (kDa)

7.71

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERO1 PF04137 74 - 426 4.5e-121 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1254
AccB1I GGYRCC 1 cut(s) 143
AccII CGCG 1 cut(s) 530
AciI CCGC 6 cut(s) 530, 1397, 1405, 1448, 1456, 1487
AcsI RAATTY 2 cut(s) 362, 687
AcuI CTGAAG 7 cut(s) 684, 948, 956, 1067, 1118, 1281, 1421
AfaI GTAC 3 cut(s) 136, 454, 695
AfiI CCNNNNNNNGG 4 cut(s) 261, 311, 392, 403
AgsI TTSAA 3 cut(s) 271, 569, 1375
AjiI CACGTC 1 cut(s) 774
AjnI CCWGG 3 cut(s) 400, 500, 914
AleI CACNNNNGTG 1 cut(s) 772
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 2 cut(s) 185, 512
AlwNI CAGNNNCTG 3 cut(s) 480, 1207, 1268
AoxI GGCC 4 cut(s) 302, 394, 778, 1027
ApeKI GCWGC 7 cut(s) 336, 440, 542, 881, 986, 1450, 1453
ApoI RAATTY 2 cut(s) 362, 687
Asp700I GAANNNNTTC 2 cut(s) 687, 1067
AspS9I GGNCC 7 cut(s) 199, 602, 778, 808, 1037, 1138, 1292
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 6 cut(s) 199, 602, 808, 1037, 1138, 1292
AxyI CCTNAGG 1 cut(s) 435
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 704, 944
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 7 cut(s) 348, 427, 554, 893, 973, 1437, 1465
BccI CCATC 7 cut(s) 24, 305, 613, 667, 1084, 1175, 1206
BciT130I CCWGG 3 cut(s) 402, 502, 916
BciVI GTATCC 1 cut(s) 666
BcoDI GTCTC 2 cut(s) 185, 512
BfaI CTAG 2 cut(s) 458, 612
BfmI CTRYAG 2 cut(s) 1208, 1451
BfuAI ACCTGC 1 cut(s) 1254
BfuI GTATCC 1 cut(s) 666
BglII AGATCT 1 cut(s) 931
BisI GCNGC 7 cut(s) 337, 441, 543, 882, 987, 1451, 1454
BlsI GCNGC 7 cut(s) 338, 442, 544, 883, 988, 1452, 1455
Bme1390I CCNGG 3 cut(s) 402, 502, 916
Bme18I GGWCC 6 cut(s) 199, 602, 808, 1037, 1138, 1292
BmgBI CACGTC 1 cut(s) 774
BmgT120I GGNCC 7 cut(s) 199, 602, 778, 808, 1037, 1138, 1292
BmiI GGNNCC 5 cut(s) 112, 145, 779, 809, 1293
BmrFI CCNGG 3 cut(s) 402, 502, 916
BmsI GCATC 3 cut(s) 616, 1373, 1526
BpiI GAAGAC 2 cut(s) 704, 944
Bpu10I CCTNAGC 1 cut(s) 579
Bsa29I ATCGAT 2 cut(s) 1418, 1469
BsaJI CCNNGG 4 cut(s) 391, 401, 500, 1141
Bsc4I CCNNNNNNNGG 4 cut(s) 261, 311, 392, 403
Bse118I RCCGGY 2 cut(s) 201, 321
Bse1I ACTGG 2 cut(s) 595, 604
Bse21I CCTNAGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 1499
BseBI CCWGG 3 cut(s) 402, 502, 916
BseCI ATCGAT 2 cut(s) 1418, 1469
BseDI CCNNGG 4 cut(s) 391, 401, 500, 1141
BseGI GGATG 5 cut(s) 631, 1109, 1362, 1413, 1464
BseLI CCNNNNNNNGG 4 cut(s) 261, 311, 392, 403
BseMI GCAATG 1 cut(s) 1499
BseMII CTCAG 6 cut(s) 152, 317, 426, 537, 570, 1275
BseNI ACTGG 2 cut(s) 595, 604
BseRI GAGGAG 2 cut(s) 1374, 1425
BseXI GCAGC 7 cut(s) 348, 427, 554, 893, 973, 1437, 1465
BseYI CCCAGC 1 cut(s) 36
BsgI GTGCAG 4 cut(s) 72, 206, 1140, 1308
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 4 cut(s) 304, 396, 780, 1029
BshNI GGYRCC 1 cut(s) 143
BshVI ATCGAT 2 cut(s) 1418, 1469
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 2 cut(s) 202, 322
BsiWI CGTACG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 1305
BslI CCNNNNNNNGG 4 cut(s) 261, 311, 392, 403
BsmAI GTCTC 2 cut(s) 185, 512
BsmFI GGGAC 1 cut(s) 1305
BsnI GGCC 4 cut(s) 304, 396, 780, 1029
Bsp1286I GDGCHC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 4 cut(s) 54, 802, 823, 931
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 6 cut(s) 530, 1397, 1405, 1448, 1456, 1487
BspANI GGCC 4 cut(s) 304, 396, 780, 1029
BspCNI CTCAG 6 cut(s) 151, 318, 427, 538, 571, 1274
BspDI ATCGAT 2 cut(s) 1418, 1469
BspFNI CGCG 1 cut(s) 530
BspHI TCATGA 1 cut(s) 1282
BspLI GGNNCC 5 cut(s) 112, 145, 779, 809, 1293
BspMAI CTGCAG 2 cut(s) 1212, 1455
BspMI ACCTGC 1 cut(s) 1254
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 1499
BsrFI RCCGGY 2 cut(s) 201, 321
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 2 cut(s) 595, 604
BssAI RCCGGY 2 cut(s) 201, 321
BssECI CCNNGG 4 cut(s) 391, 401, 500, 1141
BssMI GATC 4 cut(s) 54, 802, 823, 931
BssT1I CCWWGG 2 cut(s) 391, 1141
Bst2UI CCWGG 3 cut(s) 402, 502, 916
Bst4CI ACNGT 3 cut(s) 196, 452, 1068
Bst6I CTCTTC 4 cut(s) 8, 660, 860, 1175
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 4 cut(s) 323, 991, 1397, 1448
BstDEI CTNAG 7 cut(s) 138, 326, 435, 546, 579, 812, 1261
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 5 cut(s) 631, 1109, 1362, 1413, 1464
BstFNI CGCG 1 cut(s) 530
BstKTI GATC 4 cut(s) 57, 805, 826, 934
BstMAI GTCTC 2 cut(s) 185, 512
BstMBI GATC 4 cut(s) 54, 802, 823, 931
BstMWI GCNNNNNNNGC 4 cut(s) 56, 229, 238, 635
BstNI CCWGG 3 cut(s) 402, 502, 916
BstNSI RCATGY 2 cut(s) 902, 993
BstSCI CCNGG 3 cut(s) 400, 500, 914
BstSFI CTRYAG 2 cut(s) 1208, 1451
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 7 cut(s) 348, 427, 554, 893, 973, 1437, 1465
BstV2I GAAGAC 2 cut(s) 704, 944
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
Bsu15I ATCGAT 2 cut(s) 1418, 1469
Bsu36I CCTNAGG 1 cut(s) 435
BsuI GTATCC 1 cut(s) 666
BsuRI GGCC 4 cut(s) 304, 396, 780, 1029
BsuTUI ATCGAT 2 cut(s) 1418, 1469
BtgI CCRYGG 1 cut(s) 391
BtgZI GCGATG 1 cut(s) 43
BtrI CACGTC 1 cut(s) 774
BtsCI GGATG 5 cut(s) 631, 1109, 1362, 1413, 1464
BtsI GCAGTG 1 cut(s) 1152
BtsIMutI CAGTG 3 cut(s) 588, 597, 1152
BveI ACCTGC 1 cut(s) 1254
Cac8I GCNNGC 4 cut(s) 323, 991, 1397, 1448
CaiI CAGNNNCTG 3 cut(s) 480, 1207, 1268
CciI TCATGA 1 cut(s) 1282
Cfr10I RCCGGY 2 cut(s) 201, 321
Cfr13I GGNCC 7 cut(s) 199, 602, 778, 808, 1037, 1138, 1292
ClaI ATCGAT 2 cut(s) 1418, 1469
CseI GACGC 1 cut(s) 729
Csp6I GTAC 3 cut(s) 135, 453, 694
CspCI CAANNNNNGTGG 2 cut(s) 1340, 1375
CviAII CATG 4 cut(s) 392, 899, 990, 1283
CviQI GTAC 3 cut(s) 135, 453, 694
DdeI CTNAG 7 cut(s) 138, 326, 435, 546, 579, 812, 1261
DpnI GATC 4 cut(s) 56, 804, 825, 933
DpnII GATC 4 cut(s) 54, 802, 823, 931
DraI TTTAAA 1 cut(s) 537
Eam1104I CTCTTC 4 cut(s) 8, 660, 860, 1175
EarI CTCTTC 4 cut(s) 8, 660, 860, 1175
EciI GGCGGA 1 cut(s) 1476
Ecl136II GAGCTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 391, 1141
Eco24I GRGCYC 1 cut(s) 86
Eco32I GATATC 3 cut(s) 705, 1422, 1473
Eco47I GGWCC 6 cut(s) 199, 602, 808, 1037, 1138, 1292
Eco53kI GAGCTC 1 cut(s) 84
Eco57I CTGAAG 7 cut(s) 684, 948, 956, 1067, 1118, 1281, 1421
Eco81I CCTNAGG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 84
EcoO109I RGGNCCY 3 cut(s) 808, 1138, 1292
EcoRI GAATTC 2 cut(s) 362, 687
EcoRII CCWGG 3 cut(s) 400, 500, 914
EcoRV GATATC 3 cut(s) 705, 1422, 1473
EcoT14I CCWWGG 2 cut(s) 391, 1141
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 2 cut(s) 391, 1141
FaeI CATG 4 cut(s) 395, 902, 993, 1286
FaqI GGGAC 1 cut(s) 1305
FatI CATG 4 cut(s) 391, 898, 989, 1282
FauI CCCGC 2 cut(s) 1404, 1455
Fnu4HI GCNGC 7 cut(s) 337, 441, 543, 882, 987, 1451, 1454
FokI GGATG 5 cut(s) 638, 1116, 1369, 1420, 1471
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 7 cut(s) 337, 441, 543, 882, 987, 1451, 1454
FspBI CTAG 2 cut(s) 458, 612
GluI GCNGC 7 cut(s) 337, 441, 543, 882, 987, 1451, 1454
GsaI CCCAGC 1 cut(s) 40
HaeIII GGCC 4 cut(s) 304, 396, 780, 1029
HapII CCGG 2 cut(s) 202, 322
HgaI GACGC 1 cut(s) 729
Hin1II CATG 4 cut(s) 395, 902, 993, 1286
HincII GTYRAC 2 cut(s) 448, 1187
HindII GTYRAC 2 cut(s) 448, 1187
HindIII AAGCTT 2 cut(s) 468, 1130
HinfI GANTC 6 cut(s) 371, 562, 919, 1204, 1257, 1265
HpaII CCGG 2 cut(s) 202, 322
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 199, 448, 733, 1187
Hpy188III TCNNGA 5 cut(s) 353, 422, 578, 1040, 1283
Hpy8I GTNNAC 4 cut(s) 199, 448, 733, 1187
HpyAV CCTTC 4 cut(s) 407, 419, 609, 1305
HpyCH4III ACNGT 3 cut(s) 196, 452, 1068
HpyCH4IV ACGT 2 cut(s) 554, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 229, 238, 635
HpyF3I CTNAG 7 cut(s) 138, 326, 435, 546, 579, 812, 1261
HpySE526I ACGT 2 cut(s) 554, 773
Hsp92II CATG 4 cut(s) 395, 902, 993, 1286
KroI GCCGGC 1 cut(s) 321
KroNI GCCGGC 1 cut(s) 323
Kzo9I GATC 4 cut(s) 54, 802, 823, 931
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 7 cut(s) 348, 427, 554, 893, 973, 1437, 1465
LweI GCATC 3 cut(s) 616, 1373, 1526
MaeI CTAG 2 cut(s) 458, 612
MaeII ACGT 2 cut(s) 554, 773
MaeIII GTNAC 2 cut(s) 287, 871
MalI GATC 4 cut(s) 56, 804, 825, 933
MboI GATC 4 cut(s) 54, 802, 823, 931
MboII GAAGA 9 cut(s) 25, 557, 677, 704, 847, 854, 941, 949, 1162
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 1 cut(s) 86
MlyI GAGTC 1 cut(s) 1251
MroNI GCCGGC 1 cut(s) 321
MroXI GAANNNNTTC 2 cut(s) 687, 1067
MseI TTAA 6 cut(s) 207, 246, 276, 378, 536, 1161
MslI CAYNNNNRTG 1 cut(s) 772
MspA1I CMGCKG 5 cut(s) 545, 1301, 1399, 1450, 1456
MspI CCGG 2 cut(s) 202, 322
MspR9I CCNGG 3 cut(s) 402, 502, 916
MvaI CCWGG 3 cut(s) 402, 502, 916
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 4 cut(s) 56, 229, 238, 635
NaeI GCCGGC 1 cut(s) 323
NcoI CCATGG 1 cut(s) 391
NdeII GATC 4 cut(s) 54, 802, 823, 931
NgoMIV GCCGGC 1 cut(s) 321
NlaIII CATG 4 cut(s) 395, 902, 993, 1286
NlaIV GGNNCC 5 cut(s) 112, 145, 779, 809, 1293
NmuCI GTSAC 2 cut(s) 287, 871
NspI RCATGY 2 cut(s) 902, 993
OliI CACNNNNGTG 1 cut(s) 772
PaeI GCATGC 1 cut(s) 993
PagI TCATGA 1 cut(s) 1282
PciSI GCTCTTC 1 cut(s) 8
PdiI GCCGGC 1 cut(s) 323
PdmI GAANNNNTTC 2 cut(s) 687, 1067
PfeI GAWTC 5 cut(s) 371, 562, 919, 1204, 1265
Pfl23II CGTACG 1 cut(s) 452
PkrI GCNGC 7 cut(s) 338, 442, 544, 883, 988, 1452, 1455
PleI GAGTC 1 cut(s) 1251
PpsI GAGTC 1 cut(s) 1251
PpuMI RGGWCCY 3 cut(s) 808, 1138, 1292
Psp124BI GAGCTC 1 cut(s) 86
Psp5II RGGWCCY 3 cut(s) 808, 1138, 1292
Psp6I CCWGG 3 cut(s) 400, 500, 914
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 3 cut(s) 400, 500, 914
PspLI CGTACG 1 cut(s) 452
PspN4I GGNNCC 5 cut(s) 112, 145, 779, 809, 1293
PspPI GGNCC 7 cut(s) 199, 602, 778, 808, 1037, 1138, 1292
PspPPI RGGWCCY 3 cut(s) 808, 1138, 1292
PstI CTGCAG 2 cut(s) 1212, 1455
PstNI CAGNNNCTG 3 cut(s) 480, 1207, 1268
PsuI RGATCY 1 cut(s) 931
PvuII CAGCTG 2 cut(s) 545, 1301
RsaI GTAC 3 cut(s) 136, 454, 695
RsaNI GTAC 3 cut(s) 135, 453, 694
RseI CAYNNNNRTG 1 cut(s) 772
SacI GAGCTC 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 6 cut(s) 207, 246, 276, 378, 536, 1161
SatI GCNGC 7 cut(s) 337, 441, 543, 882, 987, 1451, 1454
Sau3AI GATC 4 cut(s) 54, 802, 823, 931
Sau96I GGNCC 7 cut(s) 199, 602, 778, 808, 1037, 1138, 1292
SchI GAGTC 1 cut(s) 1251
ScrFI CCNGG 3 cut(s) 402, 502, 916
SduI GDGCHC 1 cut(s) 86
SfaNI GCATC 3 cut(s) 616, 1373, 1526
SfcI CTRYAG 2 cut(s) 1208, 1451
SinI GGWCC 6 cut(s) 199, 602, 808, 1037, 1138, 1292
SmiI ATTTAAAT 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 772
SphI GCATGC 1 cut(s) 993
SsiI CCGC 6 cut(s) 530, 1397, 1405, 1448, 1456, 1487
SspMI CTAG 2 cut(s) 458, 612
SstI GAGCTC 1 cut(s) 86
StyD4I CCNGG 3 cut(s) 400, 500, 914
StyI CCWWGG 2 cut(s) 391, 1141
SwaI ATTTAAAT 1 cut(s) 537
TaaI ACNGT 3 cut(s) 196, 452, 1068
TaiI ACGT 2 cut(s) 557, 776
TaqI TCGA 4 cut(s) 865, 1255, 1418, 1469
TatI WGTACW 2 cut(s) 134, 693
TfiI GAWTC 5 cut(s) 371, 562, 919, 1204, 1265
Tru1I TTAA 6 cut(s) 207, 246, 276, 378, 536, 1161
Tru9I TTAA 6 cut(s) 207, 246, 276, 378, 536, 1161
TscAI CASTG 3 cut(s) 595, 604, 1159
TseFI GTSAC 2 cut(s) 287, 871
TseI GCWGC 7 cut(s) 336, 440, 542, 881, 986, 1450, 1453
Tsp45I GTSAC 2 cut(s) 287, 871
TspDTI ATGAA 6 cut(s) 704, 774, 1023, 1239, 1271, 1299
TspGWI ACGGA 1 cut(s) 1234
TspRI CASTG 3 cut(s) 595, 604, 1159
VpaK11BI GGWCC 6 cut(s) 199, 602, 808, 1037, 1138, 1292
XapI RAATTY 2 cut(s) 362, 687
XceI RCATGY 2 cut(s) 902, 993
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XmnI GAANNNNTTC 2 cut(s) 687, 1067
XspI CTAG 2 cut(s) 458, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.