Rh5DG110800

Endoplasmic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
10107227 .. 10111072
3846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG110800.1

Sequence Viewer

Length: 1407 bp
ATGGTGAGGGAGAAGAGTAAAGGAAAGCGATGGGGTTGGGTGGTGGGAGCTGTGATCGCTCTGTTGGTTGCTGTGGCTTTGAGCTCTGCACCCAAAATTGCTCTCTTTGGTTCCTCCAACAAGCCCTGTAATTGTACTCAGGGTGCCAATAAGTATAGTGGGATAGTGGAGGATTGTTGTTGTGATTATGAGACTGTGGACCGGCTTAACAAGGAAGTTCTGCACCCCTCGCTACAAGAGCTTGTTAAAACTCCGTTTTTTCGGTATTTCAAGGCTAAATTATGGTGTGACTGCCCTTTCTGGCCTGATGATGGTATGTGCCGGCTGAGAGATTGCAGTGTATGTGAATGTCCAGATAGTGAATTCCCCGAATCGTTTAAGAAACCCAACCACGGCCTTCCTGGGGATAATCCTATCTGTCAAGAAGGAAAGCCTGAGGCTGCTGTTGACCGTACGCTAGATAGAAAAGCTTTCAGAGGCTGGACAGAAATAGACAATCCCTGGACAAATGACGATGAGACTGACAACGATCCATCTGAAGAGTTATGCTATGAGGAAAGAATTCTGTACAAGTTGATATCTGGTCTTCATTCATCAATTTCAGTCCACATAGCGTCGGATTATTTACTTGATGAAACTACACAGACGTGGGGCCAAAATCTCTCATTGATGTATGATCGGGTCCTAAGATACCCTGATCGTGTCAGAAACTTGTACTTCACATATCTCTTCGTTCTTCGAGCTGTGACAAAGGCAGCAGATTACTTGGAACATGCTGAATATGACACCGGTAATCATACTGAAGATCTGAAGACACAATCCCTGACAAAACAGCTACTCTATAATCCCAAATTACAAGCTGCATGCCCAATCCCATTTGATGAAGCTAAATTGTGGAAAGGCCAGAGTGGTCCTGAACTGAAGCAGAAAATACAGAAACAGTTCAGAAACATTAGTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGGCTGTGGGGGAAGCTTCAGGTCCTTGGTCTTGGCACTGCACTTAAAATCCTCTTCTCTGTTGATGGTCAACCAAACTCCCATCAGAATCTGCAGTTGCAGCGGAATGAAGTGATTGCCTTGATAAACCTGCTCAATCGACTCTCAGAATCCGTCAAGTTTGTTCATGAAATGGGACCTTCAGCTGAAATAGAAGCGCAGGGGTCTGCAGCCACTTCCACAAATTGCCCGTTGCAAAGGATGTGGGCATCATTGTTCAATAGACCTCCTCCAAATTGCCCGCTGAAGCGGATGTGGAAATCGATATCTGACAAGCCTCCTCCAAATTGCCCGCTGCAGCGGATGTGGAAATCGATATCTGACAAGCCTCCTCCAAGTTGCCCATTGCAGAGGATTTGGGCATCAATAAACGGATGA

Protein Analysis

468

Amino Acids

53.07

Weight (kDa)

7.4

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERO1 PF04137 74 - 136 1.6e-16 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
ERO1 PF04137 170 - 384 2.8e-80 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1128
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 5 cut(s) 1093, 1271, 1279, 1322, 1330
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 2 cut(s) 362, 561
AcuI CTGAAG 7 cut(s) 558, 822, 830, 941, 992, 1155, 1295
AfaI GTAC 4 cut(s) 136, 454, 569, 716
AfiI CCNNNNNNNGG 3 cut(s) 311, 392, 403
AgeI ACCGGT 1 cut(s) 788
AgsI TTSAA 2 cut(s) 271, 1249
AjiI CACGTC 1 cut(s) 648
AjnI CCWGG 2 cut(s) 400, 500
AleI CACNNNNGTG 1 cut(s) 646
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 2 cut(s) 185, 512
AlwI GGATC 1 cut(s) 524
AlwNI CAGNNNCTG 2 cut(s) 480, 1081
AoxI GGCC 4 cut(s) 302, 394, 652, 901
ApeKI GCWGC 7 cut(s) 440, 755, 860, 1090, 1199, 1324, 1327
ApoI RAATTY 2 cut(s) 362, 561
AsiGI ACCGGT 1 cut(s) 788
Asp700I GAANNNNTTC 2 cut(s) 561, 941
AspLEI GCGC 1 cut(s) 1189
AspS9I GGNCC 6 cut(s) 199, 652, 682, 911, 1012, 1166
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 5 cut(s) 199, 682, 911, 1012, 1166
AxyI CCTNAGG 1 cut(s) 435
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 578, 818
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 7 cut(s) 427, 767, 847, 1102, 1211, 1311, 1339
BccI CCATC 6 cut(s) 24, 305, 541, 958, 1049, 1080
BceAI ACGGC 1 cut(s) 409
BciT130I CCWGG 2 cut(s) 402, 502
BcoDI GTCTC 2 cut(s) 185, 512
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 3 cut(s) 1082, 1197, 1325
BfuAI ACCTGC 1 cut(s) 1128
BglII AGATCT 1 cut(s) 805
BisI GCNGC 7 cut(s) 441, 756, 861, 1091, 1200, 1325, 1328
BlsI GCNGC 7 cut(s) 442, 757, 862, 1092, 1201, 1326, 1329
Bme1390I CCNGG 2 cut(s) 402, 502
Bme18I GGWCC 5 cut(s) 199, 682, 911, 1012, 1166
BmgBI CACGTC 1 cut(s) 648
BmgT120I GGNCC 6 cut(s) 199, 652, 682, 911, 1012, 1166
BmiI GGNNCC 5 cut(s) 112, 145, 653, 683, 1167
BmrFI CCNGG 2 cut(s) 402, 502
BmsI GCATC 2 cut(s) 1247, 1400
BpiI GAAGAC 2 cut(s) 578, 818
Bsa29I ATCGAT 2 cut(s) 1292, 1343
BsaJI CCNNGG 4 cut(s) 391, 401, 500, 1015
BsaWI WCCGGW 1 cut(s) 788
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 392, 403
Bse118I RCCGGY 3 cut(s) 201, 321, 788
Bse21I CCTNAGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 1373
BseBI CCWGG 2 cut(s) 402, 502
BseCI ATCGAT 2 cut(s) 1292, 1343
BseDI CCNNGG 4 cut(s) 391, 401, 500, 1015
BseGI GGATG 4 cut(s) 983, 1236, 1287, 1338
BseLI CCNNNNNNNGG 3 cut(s) 311, 392, 403
BseMI GCAATG 1 cut(s) 1373
BseMII CTCAG 4 cut(s) 152, 317, 426, 1149
BseRI GAGGAG 3 cut(s) 1248, 1299, 1350
BseXI GCAGC 7 cut(s) 427, 767, 847, 1102, 1211, 1311, 1339
BsgI GTGCAG 3 cut(s) 72, 206, 1014
BshFI GGCC 4 cut(s) 304, 396, 654, 903
BshNI GGYRCC 1 cut(s) 143
BshTI ACCGGT 1 cut(s) 788
BshVI ATCGAT 2 cut(s) 1292, 1343
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 3 cut(s) 202, 322, 789
BsiWI CGTACG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 3 cut(s) 311, 392, 403
BsmAI GTCTC 2 cut(s) 185, 512
BsmFI GGGAC 1 cut(s) 1179
BsnI GGCC 4 cut(s) 304, 396, 654, 903
Bsp1286I GDGCHC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 5 cut(s) 54, 529, 676, 697, 805
BspACI CCGC 5 cut(s) 1093, 1271, 1279, 1322, 1330
BspANI GGCC 4 cut(s) 304, 396, 654, 903
BspCNI CTCAG 4 cut(s) 151, 318, 427, 1148
BspDI ATCGAT 2 cut(s) 1292, 1343
BspHI TCATGA 1 cut(s) 1156
BspLI GGNNCC 5 cut(s) 112, 145, 653, 683, 1167
BspMAI CTGCAG 3 cut(s) 1086, 1201, 1329
BspMI ACCTGC 1 cut(s) 1128
BspPI GGATC 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 1373
BsrFI RCCGGY 3 cut(s) 201, 321, 788
BsrGI TGTACA 1 cut(s) 567
BssAI RCCGGY 3 cut(s) 201, 321, 788
BssECI CCNNGG 4 cut(s) 391, 401, 500, 1015
BssMI GATC 5 cut(s) 54, 529, 676, 697, 805
BssT1I CCWWGG 1 cut(s) 1015
Bst2UI CCWGG 2 cut(s) 402, 502
Bst4CI ACNGT 3 cut(s) 196, 452, 942
Bst6I CTCTTC 4 cut(s) 8, 534, 734, 1049
BstAUI TGTACA 1 cut(s) 567
BstC8I GCNNGC 4 cut(s) 323, 865, 1271, 1322
BstDEI CTNAG 5 cut(s) 138, 326, 435, 686, 1135
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 4 cut(s) 983, 1236, 1287, 1338
BstHHI GCGC 1 cut(s) 1189
BstKTI GATC 5 cut(s) 57, 532, 679, 700, 808
BstMAI GTCTC 2 cut(s) 185, 512
BstMBI GATC 5 cut(s) 54, 529, 676, 697, 805
BstMWI GCNNNNNNNGC 4 cut(s) 56, 229, 238, 1090
BstNI CCWGG 2 cut(s) 402, 502
BstNSI RCATGY 2 cut(s) 776, 867
BstSCI CCNGG 2 cut(s) 400, 500
BstSFI CTRYAG 3 cut(s) 1082, 1197, 1325
BstV1I GCAGC 7 cut(s) 427, 767, 847, 1102, 1211, 1311, 1339
BstV2I GAAGAC 2 cut(s) 578, 818
BstX2I RGATCY 1 cut(s) 805
BstYI RGATCY 1 cut(s) 805
Bsu15I ATCGAT 2 cut(s) 1292, 1343
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 4 cut(s) 304, 396, 654, 903
BsuTUI ATCGAT 2 cut(s) 1292, 1343
BtgI CCRYGG 1 cut(s) 391
BtgZI GCGATG 1 cut(s) 43
BtrI CACGTC 1 cut(s) 648
BtsCI GGATG 4 cut(s) 983, 1236, 1287, 1338
BtsI GCAGTG 2 cut(s) 343, 1026
BtsIMutI CAGTG 2 cut(s) 343, 1026
BveI ACCTGC 1 cut(s) 1128
Cac8I GCNNGC 4 cut(s) 323, 865, 1271, 1322
CaiI CAGNNNCTG 2 cut(s) 480, 1081
CciI TCATGA 1 cut(s) 1156
CfoI GCGC 1 cut(s) 1189
Cfr10I RCCGGY 3 cut(s) 201, 321, 788
Cfr13I GGNCC 6 cut(s) 199, 652, 682, 911, 1012, 1166
ClaI ATCGAT 2 cut(s) 1292, 1343
CseI GACGC 1 cut(s) 603
Csp6I GTAC 4 cut(s) 135, 453, 568, 715
CspAI ACCGGT 1 cut(s) 788
CspCI CAANNNNNGTGG 2 cut(s) 1214, 1249
CviAII CATG 3 cut(s) 773, 864, 1157
CviQI GTAC 4 cut(s) 135, 453, 568, 715
DdeI CTNAG 5 cut(s) 138, 326, 435, 686, 1135
DpnI GATC 5 cut(s) 56, 531, 678, 699, 807
DpnII GATC 5 cut(s) 54, 529, 676, 697, 805
Eam1104I CTCTTC 4 cut(s) 8, 534, 734, 1049
EarI CTCTTC 4 cut(s) 8, 534, 734, 1049
Ecl136II GAGCTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 1015
Eco24I GRGCYC 1 cut(s) 86
Eco32I GATATC 3 cut(s) 579, 1296, 1347
Eco47I GGWCC 5 cut(s) 199, 682, 911, 1012, 1166
Eco53kI GAGCTC 1 cut(s) 84
Eco57I CTGAAG 7 cut(s) 558, 822, 830, 941, 992, 1155, 1295
Eco81I CCTNAGG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 84
EcoO109I RGGNCCY 3 cut(s) 682, 1012, 1166
EcoRI GAATTC 2 cut(s) 362, 561
EcoRII CCWGG 2 cut(s) 400, 500
EcoRV GATATC 3 cut(s) 579, 1296, 1347
EcoT14I CCWWGG 1 cut(s) 1015
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 1015
FaeI CATG 3 cut(s) 776, 867, 1160
FaqI GGGAC 1 cut(s) 1179
FatI CATG 3 cut(s) 772, 863, 1156
FauI CCCGC 2 cut(s) 1278, 1329
Fnu4HI GCNGC 7 cut(s) 441, 756, 861, 1091, 1200, 1325, 1328
FokI GGATG 4 cut(s) 990, 1243, 1294, 1345
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 7 cut(s) 441, 756, 861, 1091, 1200, 1325, 1328
FspBI CTAG 1 cut(s) 458
GlaI GCGC 1 cut(s) 1188
GluI GCNGC 7 cut(s) 441, 756, 861, 1091, 1200, 1325, 1328
HaeIII GGCC 4 cut(s) 304, 396, 654, 903
HapII CCGG 3 cut(s) 202, 322, 789
HgaI GACGC 1 cut(s) 603
HhaI GCGC 1 cut(s) 1189
Hin1II CATG 3 cut(s) 776, 867, 1160
Hin6I GCGC 1 cut(s) 1187
HinP1I GCGC 1 cut(s) 1187
HincII GTYRAC 2 cut(s) 448, 1061
HindII GTYRAC 2 cut(s) 448, 1061
HindIII AAGCTT 2 cut(s) 468, 1004
HinfI GANTC 4 cut(s) 371, 1078, 1131, 1139
HpaII CCGG 3 cut(s) 202, 322, 789
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 199, 448, 607, 1061
Hpy188III TCNNGA 4 cut(s) 353, 422, 914, 1157
Hpy8I GTNNAC 4 cut(s) 199, 448, 607, 1061
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 3 cut(s) 407, 419, 1179
HpyCH4III ACNGT 3 cut(s) 196, 452, 942
HpyCH4IV ACGT 1 cut(s) 647
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 229, 238, 1090
HpyF3I CTNAG 5 cut(s) 138, 326, 435, 686, 1135
HpySE526I ACGT 1 cut(s) 647
Hsp92II CATG 3 cut(s) 776, 867, 1160
HspAI GCGC 1 cut(s) 1187
KroI GCCGGC 1 cut(s) 321
KroNI GCCGGC 1 cut(s) 323
Kzo9I GATC 5 cut(s) 54, 529, 676, 697, 805
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 7 cut(s) 427, 767, 847, 1102, 1211, 1311, 1339
LweI GCATC 2 cut(s) 1247, 1400
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 647
MaeIII GTNAC 2 cut(s) 287, 745
MalI GATC 5 cut(s) 56, 531, 678, 699, 807
MboI GATC 5 cut(s) 54, 529, 676, 697, 805
MboII GAAGA 8 cut(s) 25, 551, 578, 721, 728, 815, 823, 1036
MflI RGATCY 1 cut(s) 805
MhlI GDGCHC 1 cut(s) 86
MlyI GAGTC 1 cut(s) 1125
MmeI TCCRAC 2 cut(s) 141, 597
MroNI GCCGGC 1 cut(s) 321
MroXI GAANNNNTTC 2 cut(s) 561, 941
MseI TTAA 4 cut(s) 207, 246, 378, 1035
MslI CAYNNNNRTG 1 cut(s) 646
MspA1I CMGCKG 5 cut(s) 1093, 1175, 1273, 1324, 1330
MspI CCGG 3 cut(s) 202, 322, 789
MspR9I CCNGG 2 cut(s) 402, 502
MvaI CCWGG 2 cut(s) 402, 502
MwoI GCNNNNNNNGC 4 cut(s) 56, 229, 238, 1090
NaeI GCCGGC 1 cut(s) 323
NdeII GATC 5 cut(s) 54, 529, 676, 697, 805
NgoMIV GCCGGC 1 cut(s) 321
NlaIII CATG 3 cut(s) 776, 867, 1160
NlaIV GGNNCC 5 cut(s) 112, 145, 653, 683, 1167
NmuCI GTSAC 2 cut(s) 287, 745
NspI RCATGY 2 cut(s) 776, 867
OliI CACNNNNGTG 1 cut(s) 646
PaeI GCATGC 1 cut(s) 867
PagI TCATGA 1 cut(s) 1156
PdiI GCCGGC 1 cut(s) 323
PdmI GAANNNNTTC 2 cut(s) 561, 941
PfeI GAWTC 3 cut(s) 371, 1078, 1139
Pfl23II CGTACG 1 cut(s) 452
PinAI ACCGGT 1 cut(s) 788
PkrI GCNGC 7 cut(s) 442, 757, 862, 1092, 1201, 1326, 1329
PleI GAGTC 1 cut(s) 1125
PpsI GAGTC 1 cut(s) 1125
PpuMI RGGWCCY 3 cut(s) 682, 1012, 1166
Psp124BI GAGCTC 1 cut(s) 86
Psp5II RGGWCCY 3 cut(s) 682, 1012, 1166
Psp6I CCWGG 2 cut(s) 400, 500
PspGI CCWGG 2 cut(s) 400, 500
PspLI CGTACG 1 cut(s) 452
PspN4I GGNNCC 5 cut(s) 112, 145, 653, 683, 1167
PspPI GGNCC 6 cut(s) 199, 652, 682, 911, 1012, 1166
PspPPI RGGWCCY 3 cut(s) 682, 1012, 1166
PstI CTGCAG 3 cut(s) 1086, 1201, 1329
PstNI CAGNNNCTG 2 cut(s) 480, 1081
PsuI RGATCY 1 cut(s) 805
PvuII CAGCTG 1 cut(s) 1175
RsaI GTAC 4 cut(s) 136, 454, 569, 716
RsaNI GTAC 4 cut(s) 135, 453, 568, 715
RseI CAYNNNNRTG 1 cut(s) 646
SacI GAGCTC 1 cut(s) 86
SaqAI TTAA 4 cut(s) 207, 246, 378, 1035
SatI GCNGC 7 cut(s) 441, 756, 861, 1091, 1200, 1325, 1328
Sau3AI GATC 5 cut(s) 54, 529, 676, 697, 805
Sau96I GGNCC 6 cut(s) 199, 652, 682, 911, 1012, 1166
SchI GAGTC 1 cut(s) 1125
ScrFI CCNGG 2 cut(s) 402, 502
SduI GDGCHC 1 cut(s) 86
SfaNI GCATC 2 cut(s) 1247, 1400
SfcI CTRYAG 3 cut(s) 1082, 1197, 1325
SinI GGWCC 5 cut(s) 199, 682, 911, 1012, 1166
SmiMI CAYNNNNRTG 1 cut(s) 646
SphI GCATGC 1 cut(s) 867
SsiI CCGC 5 cut(s) 1093, 1271, 1279, 1322, 1330
SspMI CTAG 1 cut(s) 458
SstI GAGCTC 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 400, 500
StyI CCWWGG 1 cut(s) 1015
TaaI ACNGT 3 cut(s) 196, 452, 942
TaiI ACGT 1 cut(s) 650
TaqI TCGA 4 cut(s) 739, 1129, 1292, 1343
TatI WGTACW 3 cut(s) 134, 567, 714
TfiI GAWTC 3 cut(s) 371, 1078, 1139
Tru1I TTAA 4 cut(s) 207, 246, 378, 1035
Tru9I TTAA 4 cut(s) 207, 246, 378, 1035
TscAI CASTG 2 cut(s) 343, 1033
TseFI GTSAC 2 cut(s) 287, 745
TseI GCWGC 7 cut(s) 440, 755, 860, 1090, 1199, 1324, 1327
Tsp45I GTSAC 2 cut(s) 287, 745
TspDTI ATGAA 7 cut(s) 578, 582, 648, 897, 1113, 1145, 1173
TspGWI ACGGA 2 cut(s) 243, 1132
TspRI CASTG 2 cut(s) 343, 1033
VpaK11BI GGWCC 5 cut(s) 199, 682, 911, 1012, 1166
XapI RAATTY 2 cut(s) 362, 561
XceI RCATGY 2 cut(s) 776, 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XmnI GAANNNNTTC 2 cut(s) 561, 941
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.