FvH4_3g05200

Endoplasmic

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
2997839 .. 3002698
4860 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05200.t1

Sequence Viewer

Length: 1470 bp
ATGGTGGGGGAGAAGAGCAAAGGAAAGCGATGGGGTTGGGTTGTGGGAGCTTTGATCGCTGTATTGGTTGCTGTGGCTTTCAGCTCTGCAGCACCCAAGATTGGTCTCTTTGGTTCCTCTAATAAGCCCTGTAATTGTACTCAGGGTGGCAATAAGTATAGTGGGATGGTGGAGGATTGTTGTTGTGATTATGAGACAGTGGACCGGCTTAACAAGGATGTTCTGAACCCCTCGCTACAAGAGCTTGTTAAAACTCCGTTTTTTCGGTATTTCAAGGTTAAGTTGTGGTGCGACTGTCCTTTCTGGCCTGATGATGGTATGTGTCGACTGAGAGATTGCAGTGTGTGTGAATGTCCAGATAATGAATTCCCGGAATCGTTTAAGAAACCCAACCATGGCCTTCCGTTGGATAATCTTATGTGTCAAGAAGGAAAGCCTGAGGCTGCTGTTGACCGTACACTAGATAGAAAAGCTTTCAGAGGCTGGACGGAAATAGACAATCCCTGGACAAATGACGATGAGACTGACAATGCTGAGATGACATATGTGAATCTTCAACTAAATCCTGAGCGATACACTGGCTACACTGGTCCTTCCGCTAGAAGGATATGGGATGCCGTCTACGCAGAGAACTGCCCGAAGTATCCATCTGAAGAGTTATGCTATGAGGAAAGAATTCTGTACAAGTTGATATCTGGTCTTCACTCATCAATTTCAGTCCACATAGCTTCAGATTATTTACTGGATGAAACTACACAGACGTGGGGTCAAAATCTCTCATTAATGTACGATCGGGTCCTGAGATACCCTGATCGTGTCAGAAACTTGTACTTCACATATCTCTTCGTTCTTCGAGCTGTGACAAAGGCTGCAGATTATTTGGAACATGCTGAATATGACACCGGTGATGTTACTGAAGATCTGAAGACGCAGTCCCTGATAAAACAGCTACTCTACAATCCCCAATTACAAGCTGCATGCCCAATCCCATTTGATGAAGCTAAATTGTGGAAAGGCCAAAGTGGTCCTGAACTTAAGCAGAAAATACAGAAACAGTTCAGAAACATTAGTACATTGATGGATTGTGTCGGATGTGAGAAATGTCGGCTGTGGGGGAAGCTTCAGGTTCTTGGTCTCGGCACTGCACTTGAGATCCTCTTCTCTGTTGATGGTCAGCCAAACACTCGTCAGAATCTGCAGTTGCAACGAAATGAAGTGATTGCCTTGATGAACCTGCTCAATCGACTCTCTGAATCTGTCAAGTTTGTTCATGAAATGGGACCCTCAGCTGAAATAGAAGCGCAGGTTTCTACACCCACTTTCCCAAATTGCCCGTTGCAAAGGATGTGGGCATCATTTTTTAATAGACCTGCTCCAAATTGCCCGTTGCAGAGGATGTGGAAATCAATATCTGACACGCCTCCTCCAAGTTGCCCGTTGCAGAGGATATGGGCATCAATAAACGGATAA

Protein Analysis

490

Amino Acids

55.7

Weight (kDa)

5.64

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERO1 PF04137 75 - 422 2.7e-121 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 1242, 1294, 1378
AccI GTMKAC 2 cut(s) 325, 621
AciI CCGC 1 cut(s) 597
AclWI GGATC 1 cut(s) 1147
AcsI RAATTY 2 cut(s) 365, 675
AcuI CTGAAG 5 cut(s) 672, 714, 936, 944, 1106
AfaI GTAC 6 cut(s) 139, 457, 683, 788, 830, 1072
AfiI CCNNNNNNNGG 5 cut(s) 101, 314, 395, 406, 603
AflII CTTAAG 1 cut(s) 1034
AgeI ACCGGT 1 cut(s) 902
AgsI TTSAA 2 cut(s) 274, 557
AhdI GACNNNNNGTC 1 cut(s) 765
AjiI CACGTC 1 cut(s) 762
AjnI CCWGG 1 cut(s) 503
AleI CACNNNNGTG 1 cut(s) 760
Alw26I GTCTC 4 cut(s) 110, 188, 515, 1139
AlwI GGATC 1 cut(s) 1147
AlwNI CAGNNNCTG 3 cut(s) 483, 937, 1195
AoxI GGCC 3 cut(s) 305, 397, 1015
ApeKI GCWGC 4 cut(s) 89, 443, 869, 974
ApoI RAATTY 2 cut(s) 365, 675
AseI ATTAAT 1 cut(s) 782
AsiGI ACCGGT 1 cut(s) 902
Asp700I GAANNNNTTC 2 cut(s) 675, 1055
AspLEI GCGC 1 cut(s) 1303
AspS9I GGNCC 5 cut(s) 202, 590, 796, 1025, 1280
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 917
AvaII GGWCC 5 cut(s) 202, 590, 796, 1025, 1280
AxyI CCTNAGG 1 cut(s) 438
BbsI GAAGAC 2 cut(s) 692, 932
BbvCI CCTCAGC 1 cut(s) 1285
BbvI GCAGC 4 cut(s) 101, 430, 856, 961
BccI CCATC 6 cut(s) 24, 160, 308, 655, 1072, 1163
BceAI ACGGC 1 cut(s) 602
BciT130I CCWGG 1 cut(s) 505
BciVI GTATCC 1 cut(s) 654
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 4 cut(s) 110, 188, 515, 1139
BfaI CTAG 2 cut(s) 461, 600
BfmI CTRYAG 3 cut(s) 87, 870, 1196
BfrI CTTAAG 1 cut(s) 1034
BfuAI ACCTGC 3 cut(s) 1242, 1294, 1378
BfuI GTATCC 1 cut(s) 654
BglII AGATCT 1 cut(s) 919
BisI GCNGC 4 cut(s) 90, 444, 870, 975
BlsI GCNGC 4 cut(s) 91, 445, 871, 976
Bme1390I CCNGG 2 cut(s) 371, 505
Bme18I GGWCC 5 cut(s) 202, 590, 796, 1025, 1280
BmeRI GACNNNNNGTC 1 cut(s) 765
BmgBI CACGTC 1 cut(s) 762
BmgT120I GGNCC 5 cut(s) 202, 590, 796, 1025, 1280
BmiI GGNNCC 4 cut(s) 115, 797, 1281, 1282
BmrFI CCNGG 2 cut(s) 371, 505
BmsI GCATC 3 cut(s) 604, 1361, 1463
BpiI GAAGAC 2 cut(s) 692, 932
Bpu10I CCTNAGC 2 cut(s) 567, 1285
BpuEI CTTGAG 1 cut(s) 1169
BpuMI CCSGG 1 cut(s) 371
BsaI GGTCTC 2 cut(s) 110, 1139
BsaJI CCNNGG 2 cut(s) 394, 503
BsaWI WCCGGW 1 cut(s) 902
BsaXI ACNNNNNCTCC 2 cut(s) 1408, 1438
Bsc4I CCNNNNNNNGG 5 cut(s) 101, 314, 395, 406, 603
Bse118I RCCGGY 2 cut(s) 204, 902
Bse1I ACTGG 3 cut(s) 583, 592, 747
Bse21I CCTNAGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 394, 503
BseGI GGATG 7 cut(s) 171, 223, 619, 751, 1097, 1350, 1401
BseLI CCNNNNNNNGG 5 cut(s) 101, 314, 395, 406, 603
BseMII CTCAG 7 cut(s) 155, 320, 429, 525, 558, 791, 1299
BseNI ACTGG 3 cut(s) 583, 592, 747
BseRI GAGGAG 1 cut(s) 1413
BseXI GCAGC 4 cut(s) 101, 430, 856, 961
BsgI GTGCAG 1 cut(s) 1128
Bsh1285I CGRYCG 1 cut(s) 793
BshFI GGCC 3 cut(s) 307, 399, 1017
BshTI ACCGGT 1 cut(s) 902
BsiEI CGRYCG 1 cut(s) 793
BsiSI CCGG 3 cut(s) 205, 371, 903
BslFI GGGAC 2 cut(s) 919, 1293
BslI CCNNNNNNNGG 5 cut(s) 101, 314, 395, 406, 603
BsmAI GTCTC 4 cut(s) 110, 188, 515, 1139
BsmFI GGGAC 2 cut(s) 919, 1293
BsnI GGCC 3 cut(s) 307, 399, 1017
Bso31I GGTCTC 2 cut(s) 110, 1139
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 5 cut(s) 54, 790, 811, 919, 1152
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 1 cut(s) 597
BspANI GGCC 3 cut(s) 307, 399, 1017
BspCNI CTCAG 7 cut(s) 154, 321, 430, 526, 559, 792, 1298
BspHI TCATGA 1 cut(s) 1270
BspLI GGNNCC 4 cut(s) 115, 797, 1281, 1282
BspMAI CTGCAG 3 cut(s) 91, 874, 1200
BspMI ACCTGC 3 cut(s) 1242, 1294, 1378
BspPI GGATC 1 cut(s) 1147
BspQI GCTCTTC 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 1034
BspTNI GGTCTC 2 cut(s) 110, 1139
BsrFI RCCGGY 2 cut(s) 204, 902
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 3 cut(s) 583, 592, 747
BssAI RCCGGY 2 cut(s) 204, 902
BssECI CCNNGG 2 cut(s) 394, 503
BssMI GATC 5 cut(s) 54, 790, 811, 919, 1152
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 4 cut(s) 199, 296, 455, 1056
Bst6I CTCTTC 4 cut(s) 8, 648, 848, 1163
BstAFI CTTAAG 1 cut(s) 1034
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 979
BstDEI CTNAG 7 cut(s) 141, 329, 438, 534, 567, 800, 1285
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 7 cut(s) 171, 223, 619, 751, 1097, 1350, 1401
BstHHI GCGC 1 cut(s) 1303
BstKTI GATC 5 cut(s) 57, 793, 814, 922, 1155
BstMAI GTCTC 4 cut(s) 110, 188, 515, 1139
BstMBI GATC 5 cut(s) 54, 790, 811, 919, 1152
BstMCI CGRYCG 1 cut(s) 793
BstMWI GCNNNNNNNGC 3 cut(s) 56, 241, 623
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 2 cut(s) 890, 981
BstSCI CCNGG 2 cut(s) 369, 503
BstSFI CTRYAG 3 cut(s) 87, 870, 1196
BstV1I GCAGC 4 cut(s) 101, 430, 856, 961
BstV2I GAAGAC 2 cut(s) 692, 932
BstX2I RGATCY 2 cut(s) 919, 1152
BstYI RGATCY 2 cut(s) 919, 1152
Bsu36I CCTNAGG 1 cut(s) 438
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 3 cut(s) 307, 399, 1017
BtgI CCRYGG 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 43
BtrI CACGTC 1 cut(s) 762
BtsCI GGATG 7 cut(s) 171, 223, 619, 751, 1097, 1350, 1401
BtsI GCAGTG 2 cut(s) 346, 1140
BtsIMutI CAGTG 5 cut(s) 204, 346, 576, 585, 1140
BveI ACCTGC 3 cut(s) 1242, 1294, 1378
Cac8I GCNNGC 1 cut(s) 979
CaiI CAGNNNCTG 3 cut(s) 483, 937, 1195
CciI TCATGA 1 cut(s) 1270
CfoI GCGC 1 cut(s) 1303
Cfr10I RCCGGY 2 cut(s) 204, 902
Cfr13I GGNCC 5 cut(s) 202, 590, 796, 1025, 1280
CseI GACGC 1 cut(s) 937
Csp6I GTAC 6 cut(s) 138, 456, 682, 787, 829, 1071
CspAI ACCGGT 1 cut(s) 902
CspCI CAANNNNNGTGG 2 cut(s) 1328, 1363
CviAII CATG 4 cut(s) 395, 887, 978, 1271
CviQI GTAC 6 cut(s) 138, 456, 682, 787, 829, 1071
DdeI CTNAG 7 cut(s) 141, 329, 438, 534, 567, 800, 1285
DpnI GATC 5 cut(s) 56, 792, 813, 921, 1154
DpnII GATC 5 cut(s) 54, 790, 811, 919, 1152
DriI GACNNNNNGTC 1 cut(s) 765
Eam1104I CTCTTC 4 cut(s) 8, 648, 848, 1163
Eam1105I GACNNNNNGTC 1 cut(s) 765
EarI CTCTTC 4 cut(s) 8, 648, 848, 1163
Eco130I CCWWGG 1 cut(s) 394
Eco31I GGTCTC 2 cut(s) 110, 1139
Eco32I GATATC 1 cut(s) 693
Eco47I GGWCC 5 cut(s) 202, 590, 796, 1025, 1280
Eco57I CTGAAG 5 cut(s) 672, 714, 936, 944, 1106
Eco81I CCTNAGG 1 cut(s) 438
EcoO109I RGGNCCY 2 cut(s) 796, 1280
EcoRI GAATTC 2 cut(s) 365, 675
EcoRII CCWGG 1 cut(s) 503
EcoRV GATATC 1 cut(s) 693
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 4 cut(s) 398, 890, 981, 1274
FaqI GGGAC 2 cut(s) 919, 1293
FatI CATG 4 cut(s) 394, 886, 977, 1270
FauNDI CATATG 1 cut(s) 544
FblI GTMKAC 2 cut(s) 325, 621
Fnu4HI GCNGC 4 cut(s) 90, 444, 870, 975
FokI GGATG 7 cut(s) 178, 230, 626, 758, 1104, 1357, 1408
Fsp4HI GCNGC 4 cut(s) 90, 444, 870, 975
FspBI CTAG 2 cut(s) 461, 600
GlaI GCGC 1 cut(s) 1302
GluI GCNGC 4 cut(s) 90, 444, 870, 975
HaeIII GGCC 3 cut(s) 307, 399, 1017
HapII CCGG 3 cut(s) 205, 371, 903
HgaI GACGC 1 cut(s) 937
HhaI GCGC 1 cut(s) 1303
Hin1II CATG 4 cut(s) 398, 890, 981, 1274
Hin6I GCGC 1 cut(s) 1301
HinP1I GCGC 1 cut(s) 1301
HincII GTYRAC 2 cut(s) 326, 451
HindII GTYRAC 2 cut(s) 326, 451
HindIII AAGCTT 2 cut(s) 471, 1118
HinfI GANTC 5 cut(s) 374, 550, 1192, 1245, 1253
HpaII CCGG 3 cut(s) 205, 371, 903
HphI GGTGA 1 cut(s) 917
Hpy166II GTNNAC 6 cut(s) 202, 326, 451, 458, 622, 721
Hpy188III TCNNGA 6 cut(s) 356, 425, 566, 799, 1028, 1271
Hpy8I GTNNAC 6 cut(s) 202, 326, 451, 458, 622, 721
HpyAV CCTTC 4 cut(s) 410, 422, 597, 603
HpyCH4III ACNGT 4 cut(s) 199, 296, 455, 1056
HpyCH4IV ACGT 1 cut(s) 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 241, 623
HpyF3I CTNAG 7 cut(s) 141, 329, 438, 534, 567, 800, 1285
HpySE526I ACGT 1 cut(s) 761
Hsp92II CATG 4 cut(s) 398, 890, 981, 1274
HspAI GCGC 1 cut(s) 1301
KflI GGGWCCC 1 cut(s) 1280
Kzo9I GATC 5 cut(s) 54, 790, 811, 919, 1152
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 47, 1378
Lsp1109I GCAGC 4 cut(s) 101, 430, 856, 961
LweI GCATC 3 cut(s) 604, 1361, 1463
MaeI CTAG 2 cut(s) 461, 600
MaeII ACGT 1 cut(s) 761
MaeIII GTNAC 2 cut(s) 859, 910
MalI GATC 5 cut(s) 56, 792, 813, 921, 1154
MboI GATC 5 cut(s) 54, 790, 811, 919, 1152
MboII GAAGA 9 cut(s) 25, 545, 665, 692, 835, 842, 929, 937, 1150
MflI RGATCY 2 cut(s) 919, 1152
MluCI AATT 8 cut(s) 133, 365, 675, 711, 965, 1004, 1327, 1378
MlyI GAGTC 1 cut(s) 1239
MmeI TCCRAC 2 cut(s) 387, 1069
MroXI GAANNNNTTC 2 cut(s) 675, 1055
MseI TTAA 7 cut(s) 210, 249, 279, 381, 782, 1035, 1362
MslI CAYNNNNRTG 1 cut(s) 760
MspA1I CMGCKG 1 cut(s) 1289
MspCI CTTAAG 1 cut(s) 1034
MspI CCGG 3 cut(s) 205, 371, 903
MspR9I CCNGG 2 cut(s) 371, 505
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 3 cut(s) 56, 241, 623
NciI CCSGG 1 cut(s) 371
NcoI CCATGG 1 cut(s) 394
NdeI CATATG 1 cut(s) 544
NdeII GATC 5 cut(s) 54, 790, 811, 919, 1152
NlaIII CATG 4 cut(s) 398, 890, 981, 1274
NlaIV GGNNCC 4 cut(s) 115, 797, 1281, 1282
NmeAIII GCCGAG 1 cut(s) 1116
NmuCI GTSAC 1 cut(s) 859
NspI RCATGY 2 cut(s) 890, 981
OliI CACNNNNGTG 1 cut(s) 760
PaeI GCATGC 1 cut(s) 981
PagI TCATGA 1 cut(s) 1270
PciSI GCTCTTC 1 cut(s) 8
PdmI GAANNNNTTC 2 cut(s) 675, 1055
PfeI GAWTC 4 cut(s) 374, 550, 1192, 1253
PflFI GACNNNGTC 1 cut(s) 931
PfoI TCCNGGA 1 cut(s) 369
PinAI ACCGGT 1 cut(s) 902
PkrI GCNGC 4 cut(s) 91, 445, 871, 976
Ple19I CGATCG 1 cut(s) 793
PleI GAGTC 1 cut(s) 1239
PpsI GAGTC 1 cut(s) 1239
PpuMI RGGWCCY 2 cut(s) 796, 1280
PshBI ATTAAT 1 cut(s) 782
Psp5II RGGWCCY 2 cut(s) 796, 1280
Psp6I CCWGG 1 cut(s) 503
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 4 cut(s) 115, 797, 1281, 1282
PspPI GGNCC 5 cut(s) 202, 590, 796, 1025, 1280
PspPPI RGGWCCY 2 cut(s) 796, 1280
PstI CTGCAG 3 cut(s) 91, 874, 1200
PstNI CAGNNNCTG 3 cut(s) 483, 937, 1195
PsuI RGATCY 2 cut(s) 919, 1152
PsyI GACNNNGTC 1 cut(s) 931
PvuI CGATCG 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 1289
RsaI GTAC 6 cut(s) 139, 457, 683, 788, 830, 1072
RsaNI GTAC 6 cut(s) 138, 456, 682, 787, 829, 1071
RseI CAYNNNNRTG 1 cut(s) 760
SalI GTCGAC 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 7 cut(s) 210, 249, 279, 381, 782, 1035, 1362
SatI GCNGC 4 cut(s) 90, 444, 870, 975
Sau3AI GATC 5 cut(s) 54, 790, 811, 919, 1152
Sau96I GGNCC 5 cut(s) 202, 590, 796, 1025, 1280
SchI GAGTC 1 cut(s) 1239
ScrFI CCNGG 2 cut(s) 371, 505
SfaNI GCATC 3 cut(s) 604, 1361, 1463
SfcI CTRYAG 3 cut(s) 87, 870, 1196
SgrAI CRCCGGYG 1 cut(s) 902
SinI GGWCC 5 cut(s) 202, 590, 796, 1025, 1280
SmiMI CAYNNNNRTG 1 cut(s) 760
SmlI CTYRAG 2 cut(s) 1034, 1148
SmoI CTYRAG 2 cut(s) 1034, 1148
SphI GCATGC 1 cut(s) 981
Sse9I AATT 8 cut(s) 133, 365, 675, 711, 965, 1004, 1327, 1378
SsiI CCGC 1 cut(s) 597
SspMI CTAG 2 cut(s) 461, 600
StyD4I CCNGG 2 cut(s) 369, 503
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 4 cut(s) 199, 296, 455, 1056
TaiI ACGT 1 cut(s) 764
TaqI TCGA 3 cut(s) 325, 853, 1243
TasI AATT 8 cut(s) 133, 365, 675, 711, 965, 1004, 1327, 1378
TatI WGTACW 4 cut(s) 137, 681, 828, 1070
TfiI GAWTC 4 cut(s) 374, 550, 1192, 1253
Tru1I TTAA 7 cut(s) 210, 249, 279, 381, 782, 1035, 1362
Tru9I TTAA 7 cut(s) 210, 249, 279, 381, 782, 1035, 1362
TscAI CASTG 5 cut(s) 204, 346, 583, 592, 1147
TseFI GTSAC 1 cut(s) 859
TseI GCWGC 4 cut(s) 89, 443, 869, 974
Tsp45I GTSAC 1 cut(s) 859
TspDTI ATGAA 7 cut(s) 378, 762, 1011, 1227, 1244, 1259, 1287
TspGWI ACGGA 3 cut(s) 246, 393, 503
TspRI CASTG 5 cut(s) 204, 346, 583, 592, 1147
Tth111I GACNNNGTC 1 cut(s) 931
Vha464I CTTAAG 1 cut(s) 1034
VpaK11BI GGWCC 5 cut(s) 202, 590, 796, 1025, 1280
VspI ATTAAT 1 cut(s) 782
XapI RAATTY 2 cut(s) 365, 675
XceI RCATGY 2 cut(s) 890, 981
XmiI GTMKAC 2 cut(s) 325, 621
XmnI GAANNNNTTC 2 cut(s) 675, 1055
XspI CTAG 2 cut(s) 461, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.