AT2G39000

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009315
Physical Location & Seq
Reverse (-)
16286212 .. 16288262
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39000.3

Sequence Viewer

Length: 876 bp
ATGCGGAGCACACCGTTGGGGACGACGGCGGTTTCACCAGCTTCAATCAAACACAACTCTTATGGGTATGGCCGCTTCGTTTCCTCTTCAGGAGTCTCTAATTTCTCTATCCATCGTCGGAGACGCCACTCGTCGTTTTCTATCTCTCAAGCTCCTTCACAAATCAACTCAGGAGCTTGCAATGCAAGTCAAATAGTTGATCTTTTTCCAGCGGTTTCACCTGAAATCGTTGTTCGTGAAGCACGGTTAGAGGACTGTTGGGAGGTGGCAGAGACTCATTGCAGCTCTTTCTTCCCGGGATATTCGTTCCCGCTTGATGTTGTTCTAAGAGTAGATAGGTTAATGGCAATGGTGATGGGATTTTCTATTCCACCTGGGTGCCAGAGGACTTGTTTAGTGGCTGTGATAGGTAGTTCAGTAGATGAAACCATCTGCTTTGGAAGTGATGATTTCAAAATTGGAGCTTTTGATGCAAAGATCAGCTTAAACAAAGGTTATGTTGCTGGAATCTTGACTGTTGATACTGTGGCTGATTACCTTCCAAGAAAAGGACCTCTCCGCCAGAGAAGGACCGGGATCGCTTATGTATCAAATGTGGCAGTTCGAGAGAATTTCCGGCGCAAAGGAATAGCCAAGAGACTCATATGGAAAGCAGAGGCTTTAGCCAAGAACTGGGGATGTAGAGCTATCGGCCTTCACTGTGATCTCAACAACTTAGGAGCAACTAAACTTTACAAAGATCAAGGTTTCAGATCCATCAAGATCCCTGAAGGAGCGACTTGGCCTCAACCGAAGACATCTCCTGACACCAGGTTTACCTTCATGATGAAGCTAGTGAACAACAACAATACACAAGCTCTTGAACAGTTTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

291

Amino Acids

32.17

Weight (kDa)

9.64

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 122 - 194 5e-16 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 133 - 195 6.3e-09 Acetyltransferase (GNAT) domain
Acetyltransf_10 PF13673 136 - 197 9.5e-06 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39000 AT2G39000 AT2G39000 AT2G39000
fragaria_vesca FvH4_7g19440 FvH4_7g19440 FvH4_7g19440
malus_domestica MD01G1108300.v1.1 MD07G1174400.v1.1
prunus_persica Prupe.2G213200_v2.0.a1
pyrus_communis pycom01g13520 pycom07g16860
rosa_chinensis RchiOBHm_Chr1g0363321
rosa_laevigata RLG00000027574
rosa_multiflora Rmu_sc0011095.1_g000002
rosa_roxburghii Rroxscaffold_4G00293280
rosa_rugosa Rorug01G0306300
rosa_samantha Rh1AG315100 Rh1BG278300 Rh1CG294800 Rh1DG309400
rosa_wichuraiana Rw1G027920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 672
AciI CCGC 6 cut(s) 4, 29, 73, 212, 311, 559
AclWI GGATC 3 cut(s) 584, 747, 757
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 610
AcuI CTGAAG 2 cut(s) 72, 789
AcyI GRCGYC 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 548, 672
AgsI TTSAA 3 cut(s) 45, 454, 863
AjnI CCWGG 2 cut(s) 373, 809
AleI CACNNNNGTG 1 cut(s) 376
AluBI AGCT 9 cut(s) 41, 152, 176, 285, 464, 483, 686, 832, 857
AluI AGCT 9 cut(s) 41, 152, 176, 285, 464, 483, 686, 832, 857
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 4 cut(s) 100, 115, 266, 631
AlwI GGATC 3 cut(s) 584, 747, 757
Ama87I CYCGRG 1 cut(s) 295
AoxI GGCC 3 cut(s) 70, 691, 782
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 610
Asp700I GAANNNNTTC 1 cut(s) 867
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 2 cut(s) 551, 570
AsuC2I CCSGG 3 cut(s) 296, 297, 574
AsuHPI GGTGA 3 cut(s) 27, 210, 364
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 2 cut(s) 551, 570
BanI GGYRCC 1 cut(s) 378
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BbsI GAAGAC 1 cut(s) 800
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 294
BccI CCATC 4 cut(s) 120, 349, 437, 764
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 375, 811
BcnI CCSGG 3 cut(s) 296, 297, 574
BcoDI GTCTC 4 cut(s) 100, 115, 266, 631
BfaI CTAG 1 cut(s) 833
BisI GCNGC 2 cut(s) 73, 283
BlsI GCNGC 2 cut(s) 74, 284
Bme1390I CCNGG 5 cut(s) 296, 297, 375, 574, 811
Bme18I GGWCC 2 cut(s) 551, 570
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 551, 570
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 5 cut(s) 296, 297, 375, 574, 811
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 132
BpuMI CCSGG 3 cut(s) 296, 297, 574
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 295, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 672
Bse1I ACTGG 1 cut(s) 677
Bse3DI GCAATG 3 cut(s) 187, 277, 354
BseBI CCWGG 2 cut(s) 375, 811
BseDI CCNNGG 2 cut(s) 295, 374
BseGI GGATG 1 cut(s) 683
BseLI CCNNNNNNNGG 2 cut(s) 548, 672
BseMI GCAATG 3 cut(s) 187, 277, 354
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 677
BseXI GCAGC 1 cut(s) 294
BshFI GGCC 3 cut(s) 72, 693, 784
BshNI GGYRCC 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 296, 573, 616
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 2 cut(s) 548, 672
BsmAI GTCTC 4 cut(s) 100, 115, 266, 631
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 3 cut(s) 72, 693, 784
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 7 cut(s) 199, 477, 576, 703, 739, 752, 762
BspACI CCGC 6 cut(s) 4, 29, 73, 212, 311, 559
BspANI GGCC 3 cut(s) 72, 693, 784
BspCNI CTCAG 1 cut(s) 182
BspHI TCATGA 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 380
BspPI GGATC 3 cut(s) 584, 747, 757
BspT107I GGYRCC 1 cut(s) 378
BsrDI GCAATG 3 cut(s) 187, 277, 354
BsrI ACTGG 1 cut(s) 677
BssECI CCNNGG 2 cut(s) 295, 374
BssMI GATC 7 cut(s) 199, 477, 576, 703, 739, 752, 762
BssNI GRCGYC 1 cut(s) 124
Bst2UI CCWGG 2 cut(s) 375, 811
Bst4CI ACNGT 7 cut(s) 15, 246, 257, 517, 526, 701, 867
Bst6I CTCTTC 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 169, 326, 715
BstF5I GGATG 1 cut(s) 683
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 7 cut(s) 202, 480, 579, 706, 742, 755, 765
BstMAI GTCTC 4 cut(s) 100, 115, 266, 631
BstMBI GATC 7 cut(s) 199, 477, 576, 703, 739, 752, 762
BstMWI GCNNNNNNNGC 2 cut(s) 182, 470
BstNI CCWGG 2 cut(s) 375, 811
BstSCI CCNGG 5 cut(s) 294, 295, 373, 572, 809
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 800
BstX2I RGATCY 2 cut(s) 752, 762
BstYI RGATCY 2 cut(s) 752, 762
BsuRI GGCC 3 cut(s) 72, 693, 784
BtsCI GGATG 1 cut(s) 683
BtsIMutI CAGTG 1 cut(s) 697
Cac8I GCNNGC 1 cut(s) 178
CciI TCATGA 1 cut(s) 822
CfoI GCGC 1 cut(s) 621
Cfr13I GGNCC 2 cut(s) 551, 570
Cfr9I CCCGGG 1 cut(s) 295
CseI GACGC 1 cut(s) 132
CsiI ACCWGGT 1 cut(s) 809
CviAII CATG 1 cut(s) 823
DdeI CTNAG 3 cut(s) 169, 326, 715
DpnI GATC 7 cut(s) 201, 479, 578, 705, 741, 754, 764
DpnII GATC 7 cut(s) 199, 477, 576, 703, 739, 752, 762
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 551, 570
Eco57I CTGAAG 2 cut(s) 72, 789
Eco88I CYCGRG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 551
EcoRII CCWGG 2 cut(s) 373, 809
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 826
FaiI YATR 7 cut(s) 63, 69, 498, 585, 644, 646, 824
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 822
FauI CCCGC 1 cut(s) 318
FauNDI CATATG 1 cut(s) 644
Fnu4HI GCNGC 2 cut(s) 73, 283
FokI GGATG 1 cut(s) 690
Fsp4HI GCNGC 2 cut(s) 73, 283
FspBI CTAG 1 cut(s) 833
GlaI GCGC 1 cut(s) 620
GluI GCNGC 2 cut(s) 73, 283
HaeIII GGCC 3 cut(s) 72, 693, 784
HapII CCGG 3 cut(s) 296, 573, 616
HgaI GACGC 1 cut(s) 132
HhaI GCGC 1 cut(s) 621
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 1 cut(s) 826
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HinfI GANTC 4 cut(s) 93, 274, 507, 639
HpaII CCGG 3 cut(s) 296, 573, 616
HphI GGTGA 3 cut(s) 27, 210, 364
Hpy166II GTNNAC 2 cut(s) 816, 838
Hpy188I TCNGA 2 cut(s) 120, 752
Hpy188III TCNNGA 9 cut(s) 90, 171, 236, 511, 605, 760, 803, 823, 860
Hpy8I GTNNAC 2 cut(s) 816, 838
Hpy99I CGWCG 3 cut(s) 28, 120, 136
HpyAV CCTTC 6 cut(s) 165, 548, 561, 704, 764, 829
HpyCH4III ACNGT 7 cut(s) 15, 246, 257, 517, 526, 701, 867
HpyCH4V TGCA 4 cut(s) 180, 185, 282, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 470
HpyF3I CTNAG 3 cut(s) 169, 326, 715
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 1 cut(s) 826
HspAI GCGC 1 cut(s) 619
Kzo9I GATC 7 cut(s) 199, 477, 576, 703, 739, 752, 762
LmnI GCTCC 6 cut(s) 6, 157, 173, 461, 719, 773
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 460
MabI ACCWGGT 1 cut(s) 809
MaeI CTAG 1 cut(s) 833
MalI GATC 7 cut(s) 201, 479, 578, 705, 741, 754, 764
MboI GATC 7 cut(s) 199, 477, 576, 703, 739, 752, 762
MboII GAAGA 3 cut(s) 78, 283, 805
MflI RGATCY 2 cut(s) 752, 762
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 100, 456, 610
MlyI GAGTC 3 cut(s) 102, 268, 633
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 7 cut(s) 94, 244, 256, 378, 564, 649, 795
MroXI GAANNNNTTC 1 cut(s) 867
MseI TTAA 2 cut(s) 341, 485
MslI CAYNNNNRTG 1 cut(s) 376
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 3 cut(s) 296, 573, 616
MspR9I CCNGG 5 cut(s) 296, 297, 375, 574, 811
MvaI CCWGG 2 cut(s) 375, 811
MwoI GCNNNNNNNGC 2 cut(s) 182, 470
NciI CCSGG 3 cut(s) 296, 297, 574
NdeI CATATG 1 cut(s) 644
NdeII GATC 7 cut(s) 199, 477, 576, 703, 739, 752, 762
NlaIII CATG 1 cut(s) 826
NlaIV GGNNCC 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 376
PagI TCATGA 1 cut(s) 822
PdmI GAANNNNTTC 1 cut(s) 867
PfeI GAWTC 1 cut(s) 507
PflMI CCANNNNNTGG 1 cut(s) 672
PkrI GCNGC 2 cut(s) 74, 284
PleI GAGTC 3 cut(s) 101, 268, 633
PpsI GAGTC 3 cut(s) 101, 268, 633
PpuMI RGGWCCY 1 cut(s) 551
Psp5II RGGWCCY 1 cut(s) 551
Psp6I CCWGG 2 cut(s) 373, 809
PspGI CCWGG 2 cut(s) 373, 809
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 2 cut(s) 551, 570
PspPPI RGGWCCY 1 cut(s) 551
PsuI RGATCY 2 cut(s) 752, 762
RseI CAYNNNNRTG 1 cut(s) 376
SaqAI TTAA 2 cut(s) 341, 485
SatI GCNGC 2 cut(s) 73, 283
Sau3AI GATC 7 cut(s) 199, 477, 576, 703, 739, 752, 762
Sau96I GGNCC 2 cut(s) 551, 570
SchI GAGTC 3 cut(s) 102, 268, 633
ScrFI CCNGG 5 cut(s) 296, 297, 375, 574, 811
SduI GDGCHC 1 cut(s) 11
SexAI ACCWGGT 1 cut(s) 809
SfaNI GCATC 1 cut(s) 460
SinI GGWCC 2 cut(s) 551, 570
SmaI CCCGGG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 3 cut(s) 100, 456, 610
SsiI CCGC 6 cut(s) 4, 29, 73, 212, 311, 559
SspMI CTAG 1 cut(s) 833
StyD4I CCNGG 5 cut(s) 294, 295, 373, 572, 809
TaaI ACNGT 7 cut(s) 15, 246, 257, 517, 526, 701, 867
TaqI TCGA 1 cut(s) 604
TasI AATT 3 cut(s) 100, 456, 610
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 2 cut(s) 341, 485
Tru9I TTAA 2 cut(s) 341, 485
TscAI CASTG 1 cut(s) 704
TseI GCWGC 1 cut(s) 282
TspDTI ATGAA 3 cut(s) 438, 811, 842
TspMI CCCGGG 1 cut(s) 295
TspRI CASTG 1 cut(s) 704
Van91I CCANNNNNTGG 1 cut(s) 672
VpaK11BI GGWCC 2 cut(s) 551, 570
XapI RAATTY 1 cut(s) 610
XmaI CCCGGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 867
XspI CTAG 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.