Rh1DG309400

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009315
Physical Location & Seq
Reverse (-)
53618807 .. 53621714
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG309400.1

Sequence Viewer

Length: 837 bp
ATGCGGACCGTACCGTTGGGAATCTCAGTGTCCCCAACCTCCATTAACACCACTCTCAACCTTAAACGACCAAACAACTTCCCTCTTTCCACTTCTAGGGTTTCTGCATCCTCCACTAACAATTTCTCTCTCCTCTCCTTCTCCAAATCTGGAGTGTGCAGAGCCAGTCAAGTGGCTGATCTATTTCCAACTGTGTCTCCTGAAATTGTTGTTCGGGAGGCGAGGTTAGAGGACTGTTGGGAGGTTGCCGAGACTCATTGCAGCTCTTTCTTCCCCGAATATGCTTTCCCTTTGGATTTTGTTCTTAGGGTTGACCGGCTAGTGGGAATGCTAGCCGGGTTTTCTTTGCCAAGTGGTTGCAAAAGGACTTGTCTGGTAGCGGTCATTGGAAACCCTGCTGATGAAACTTTCCTCTTCGGAAGTGAAGATTTCAAGATTGCCGGTCTTGATGGGAAGATCAGTCTCAGTAAGAGGTATGTGGCTGGAATATTGACAGTGGATACTGTAGCTGATTTTCTTCCTAGAAAAGGTCCTCTCCGGCAGAGAAGGACTGGTATTGCATATGTATCAAACGTTGCTGTTCGGGAGAAATTTCGACGTAGAGGAATTGGTAAAAGGCTAATAGCGAAAGCAGAAGCTCAAGCAAGGAGCTGGGATTGTCGTGCCATCACATTGCATTGTGATTTGAACAATCCAGGAGCCATAAAGCTGTACAAAGGTCAGGGCTTCAAATCTATTAAGGTGCCTGAAGGAGCAACTTGGCCTCAACCCAAGACCGCGCCCGATGTTAGATTCAACTTCATGATGAAGCTTCTGAACAACACTACTGCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

278

Amino Acids

30.57

Weight (kDa)

9.81

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 178 - 243 2.7e-16 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 184 - 244 1.9e-10 Acetyltransferase (GNAT) domain
Acetyltransf_10 PF13673 185 - 247 7.3e-07 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39000 AT2G39000 AT2G39000 AT2G39000
fragaria_vesca FvH4_7g19440 FvH4_7g19440 FvH4_7g19440
malus_domestica MD01G1108300.v1.1 MD07G1174400.v1.1
prunus_persica Prupe.2G213200_v2.0.a1
pyrus_communis pycom01g13520 pycom07g16860
rosa_chinensis RchiOBHm_Chr1g0363321
rosa_laevigata RLG00000027574
rosa_multiflora Rmu_sc0011095.1_g000002
rosa_roxburghii Rroxscaffold_4G00293280
rosa_rugosa Rorug01G0306300
rosa_samantha Rh1AG315100 Rh1BG278300 Rh1CG294800 Rh1DG309400
rosa_wichuraiana Rw1G027920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 742
AccII CGCG 1 cut(s) 779
AciI CCGC 3 cut(s) 4, 380, 777
AclI AACGTT 1 cut(s) 573
AcsI RAATTY 1 cut(s) 590
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 2 cut(s) 12, 713
AfiI CCNNNNNNNGG 3 cut(s) 96, 322, 527
AgsI TTSAA 4 cut(s) 433, 688, 730, 796
AjnI CCWGG 1 cut(s) 694
AluBI AGCT 6 cut(s) 264, 509, 638, 651, 709, 811
AluI AGCT 6 cut(s) 264, 509, 638, 651, 709, 811
Alw26I GTCTC 3 cut(s) 201, 245, 467
AoxI GGCC 1 cut(s) 761
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 590
AspLEI GCGC 1 cut(s) 781
AspS9I GGNCC 2 cut(s) 6, 530
AsuC2I CCSGG 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 331
AvaII GGWCC 2 cut(s) 6, 530
BanI GGYRCC 1 cut(s) 742
BbvI GCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 443, 674
BciT130I CCWGG 1 cut(s) 696
BciVI GTATCC 1 cut(s) 493
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 3 cut(s) 201, 245, 467
BfaI CTAG 4 cut(s) 96, 320, 332, 522
BfmI CTRYAG 1 cut(s) 504
BfuI GTATCC 1 cut(s) 493
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 2 cut(s) 337, 696
Bme18I GGWCC 2 cut(s) 6, 530
BmgT120I GGNCC 2 cut(s) 6, 530
BmiI GGNNCC 2 cut(s) 700, 744
BmrFI CCNGG 2 cut(s) 337, 696
BmsI GCATC 1 cut(s) 116
BmtI GCTAGC 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 624
BpuMI CCSGG 1 cut(s) 337
BsaXI ACNNNNNCTCC 4 cut(s) 181, 209, 211, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 322, 527
Bse118I RCCGGY 2 cut(s) 315, 440
Bse1I ACTGG 2 cut(s) 165, 556
Bse3DI GCAATG 2 cut(s) 256, 671
BseBI CCWGG 1 cut(s) 696
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 3 cut(s) 96, 322, 527
BseMI GCAATG 2 cut(s) 256, 671
BseMII CTCAG 2 cut(s) 39, 478
BseNI ACTGG 2 cut(s) 165, 556
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 273
BseYI CCCAGC 1 cut(s) 651
BsgI GTGCAG 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 779
BshFI GGCC 1 cut(s) 763
BshNI GGYRCC 1 cut(s) 742
BsiSI CCGG 4 cut(s) 316, 336, 441, 538
BslFI GGGAC 1 cut(s) 16
BslI CCNNNNNNNGG 3 cut(s) 96, 322, 527
BsmAI GTCTC 3 cut(s) 201, 245, 467
BsmFI GGGAC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 1 cut(s) 763
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 2 cut(s) 178, 456
BspACI CCGC 3 cut(s) 4, 380, 777
BspANI GGCC 1 cut(s) 763
BspCNI CTCAG 2 cut(s) 38, 477
BspFNI CGCG 1 cut(s) 779
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 2 cut(s) 700, 744
BspOI GCTAGC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 742
BsrDI GCAATG 2 cut(s) 256, 671
BsrFI RCCGGY 2 cut(s) 315, 440
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 2 cut(s) 165, 556
BssAI RCCGGY 2 cut(s) 315, 440
BssMI GATC 2 cut(s) 178, 456
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 6 cut(s) 10, 15, 193, 236, 496, 505
Bst6I CTCTTC 1 cut(s) 419
BstAUI TGTACA 1 cut(s) 711
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 4 cut(s) 25, 305, 464, 834
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 779
BstHHI GCGC 1 cut(s) 781
BstKTI GATC 2 cut(s) 181, 459
BstMAI GTCTC 3 cut(s) 201, 245, 467
BstMBI GATC 2 cut(s) 178, 456
BstNI CCWGG 1 cut(s) 696
BstSCI CCNGG 2 cut(s) 335, 694
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuI GTATCC 1 cut(s) 493
BsuRI GGCC 1 cut(s) 763
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 33, 501
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 1 cut(s) 801
CfoI GCGC 1 cut(s) 781
Cfr10I RCCGGY 2 cut(s) 315, 440
Cfr13I GGNCC 2 cut(s) 6, 530
CpoI CGGWCCG 1 cut(s) 6
Csp6I GTAC 2 cut(s) 11, 712
CspI CGGWCCG 1 cut(s) 6
CviAII CATG 1 cut(s) 802
CviQI GTAC 2 cut(s) 11, 712
DdeI CTNAG 4 cut(s) 25, 305, 464, 834
DpnI GATC 2 cut(s) 180, 458
DpnII GATC 2 cut(s) 178, 456
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 6, 530
Eco57I CTGAAG 1 cut(s) 768
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 694
FaeI CATG 1 cut(s) 805
FaiI YATR 6 cut(s) 282, 477, 562, 564, 704, 803
FaqI GGGAC 1 cut(s) 16
FatI CATG 1 cut(s) 801
FauNDI CATATG 1 cut(s) 562
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 4 cut(s) 96, 320, 332, 522
GlaI GCGC 1 cut(s) 780
GluI GCNGC 1 cut(s) 262
GsaI CCCAGC 1 cut(s) 655
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 763
HapII CCGG 4 cut(s) 316, 336, 441, 538
HhaI GCGC 1 cut(s) 781
Hin1II CATG 1 cut(s) 805
Hin6I GCGC 1 cut(s) 779
HinP1I GCGC 1 cut(s) 779
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 3 cut(s) 21, 253, 792
HpaII CCGG 4 cut(s) 316, 336, 441, 538
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 419, 816
Hpy188III TCNNGA 7 cut(s) 150, 200, 215, 433, 446, 584, 802
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 1 cut(s) 600
HpyAV CCTTC 3 cut(s) 148, 540, 743
HpyCH4III ACNGT 6 cut(s) 10, 15, 193, 236, 496, 505
HpyCH4IV ACGT 2 cut(s) 573, 598
HpyCH4V TGCA 7 cut(s) 107, 159, 261, 360, 560, 676, 830
HpyF3I CTNAG 4 cut(s) 25, 305, 464, 834
HpySE526I ACGT 2 cut(s) 573, 598
Hsp92II CATG 1 cut(s) 805
HspAI GCGC 1 cut(s) 779
Kzo9I GATC 2 cut(s) 178, 456
LmnI GCTCC 3 cut(s) 648, 698, 752
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 116
MaeI CTAG 4 cut(s) 96, 320, 332, 522
MaeII ACGT 2 cut(s) 573, 598
MalI GATC 2 cut(s) 180, 458
MboI GATC 2 cut(s) 178, 456
MboII GAAGA 5 cut(s) 262, 406, 437, 466, 509
MluCI AATT 4 cut(s) 121, 204, 590, 606
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 212
MseI TTAA 3 cut(s) 45, 63, 738
MspI CCGG 4 cut(s) 316, 336, 441, 538
MspR9I CCNGG 2 cut(s) 337, 696
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 1 cut(s) 779
NciI CCSGG 1 cut(s) 337
NdeI CATATG 1 cut(s) 562
NdeII GATC 2 cut(s) 178, 456
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 1 cut(s) 805
NlaIV GGNNCC 2 cut(s) 700, 744
NmeAIII GCCGAG 1 cut(s) 274
PagI TCATGA 1 cut(s) 801
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 21, 792
PfoI TCCNGGA 1 cut(s) 694
PkrI GCNGC 1 cut(s) 263
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 530
Psp1406I AACGTT 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 651
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 2 cut(s) 700, 744
PspPI GGNCC 2 cut(s) 6, 530
PspPPI RGGWCCY 1 cut(s) 530
RsaI GTAC 2 cut(s) 12, 713
RsaNI GTAC 2 cut(s) 11, 712
Rsr2I CGGWCCG 1 cut(s) 6
RsrII CGGWCCG 1 cut(s) 6
SaqAI TTAA 3 cut(s) 45, 63, 738
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 2 cut(s) 178, 456
Sau96I GGNCC 2 cut(s) 6, 530
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 337, 696
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 6, 530
SmlI CTYRAG 1 cut(s) 639
SmoI CTYRAG 1 cut(s) 639
Sse9I AATT 4 cut(s) 121, 204, 590, 606
SsiI CCGC 3 cut(s) 4, 380, 777
SspI AATATT 1 cut(s) 489
SspMI CTAG 4 cut(s) 96, 320, 332, 522
StyD4I CCNGG 2 cut(s) 335, 694
TaaI ACNGT 6 cut(s) 10, 15, 193, 236, 496, 505
TaiI ACGT 2 cut(s) 576, 601
TaqI TCGA 1 cut(s) 595
TasI AATT 4 cut(s) 121, 204, 590, 606
TatI WGTACW 1 cut(s) 711
TfiI GAWTC 2 cut(s) 21, 792
Tru1I TTAA 3 cut(s) 45, 63, 738
Tru9I TTAA 3 cut(s) 45, 63, 738
TscAI CASTG 2 cut(s) 33, 501
TseI GCWGC 1 cut(s) 261
TspDTI ATGAA 3 cut(s) 417, 790, 821
TspRI CASTG 2 cut(s) 33, 501
VpaK11BI GGWCC 2 cut(s) 6, 530
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 1 cut(s) 590
XspI CTAG 4 cut(s) 96, 320, 332, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.