Rorug01G0306300

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009315
Physical Location & Seq
Forward (+)
42282402 .. 42283040
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0306300.1

Sequence Viewer

Length: 546 bp
ATGGCGATCTCTAACGTTTGGGGATTAAAGAAAAAAGTCTTGATCTGGCAGGAGGAGGAGGACATTTTCGTTTTCAAATTTAAGGAAAGGGAGGTGAAGAATCGGGTCCTTACTGGGGGTCCATGGTTTTACAATAACTTTATGCTGCTGTTGGCTGATTATGACAGCTTCTCTGCTCTTGATGCGGCGCCGCTGCATCTCTTTGAGGTTTGGATGGCGGTAAAGGGATTGCGCATTACTATGCATAACGAGAAAACTTTAATGCTAATCGGACAAGTGTTGGGGGATCGGCTGTTTGAGTTTTCACCGACAGTCTCGGTGATGGTGGAGCTGCATTATGAGAAGTGTCATAGGCTTTGTGCAGCGTGTGGTTTCTTCGGTCATGGCGGTGGGATCTGTAACAAGCGACTGGAGGTGGAGGCGTCGTTTGACCTGTCGGGCCGAGATGCAGTGGAATCGGGCCGTGCGGGTTTAGGGTTGGAATCAGTTTCCGGACTGCACGCTGCTGTGGCAGCGGTGGTGGGGACGGAGACGGTGTCGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

181

Amino Acids

20.06

Weight (kDa)

5.86

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 3 - 59 1.5e-09 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39000 AT2G39000 AT2G39000 AT2G39000
fragaria_vesca FvH4_7g19440 FvH4_7g19440 FvH4_7g19440
malus_domestica MD01G1108300.v1.1 MD07G1174400.v1.1
prunus_persica Prupe.2G213200_v2.0.a1
pyrus_communis pycom01g13520 pycom07g16860
rosa_chinensis RchiOBHm_Chr1g0363321
rosa_laevigata RLG00000027574
rosa_multiflora Rmu_sc0011095.1_g000002
rosa_roxburghii Rroxscaffold_4G00293280
rosa_rugosa Rorug01G0306300
rosa_samantha Rh1AG315100 Rh1BG278300 Rh1CG294800 Rh1DG309400
rosa_wichuraiana Rw1G027920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 6 cut(s) 185, 191, 218, 387, 467, 515
AclI AACGTT 1 cut(s) 15
AclWI GGATC 2 cut(s) 294, 401
AcsI RAATTY 1 cut(s) 77
AcyI GRCGYC 2 cut(s) 188, 422
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 2 cut(s) 168, 331
AluI AGCT 2 cut(s) 168, 331
Alw26I GTCTC 2 cut(s) 319, 524
AlwI GGATC 2 cut(s) 294, 401
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 2 cut(s) 439, 460
ApeKI GCWGC 6 cut(s) 145, 193, 331, 362, 503, 512
ApoI RAATTY 1 cut(s) 77
AspLEI GCGC 2 cut(s) 190, 234
AspS9I GGNCC 4 cut(s) 106, 119, 439, 460
AsuHPI GGTGA 3 cut(s) 106, 297, 331
AvaII GGWCC 2 cut(s) 106, 119
BanI GGYRCC 1 cut(s) 187
BbvI GCAGC 6 cut(s) 132, 180, 318, 374, 490, 524
BccI CCATC 2 cut(s) 208, 316
BceAI ACGGC 1 cut(s) 447
BcgI CGANNNNNNTGC 2 cut(s) 438, 472
BcoDI GTCTC 2 cut(s) 319, 524
BfoI RGCGCY 1 cut(s) 191
BisI GCNGC 8 cut(s) 146, 186, 191, 194, 332, 363, 504, 513
BlsI GCNGC 8 cut(s) 147, 187, 192, 195, 333, 364, 505, 514
Bme18I GGWCC 2 cut(s) 106, 119
BmgT120I GGNCC 4 cut(s) 106, 119, 439, 460
BmiI GGNNCC 3 cut(s) 107, 120, 189
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 3 cut(s) 172, 205, 436
BmuI ACTGGG 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 431
BsaHI GRCGYC 2 cut(s) 188, 422
BsaJI CCNNGG 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 491
BsaXI ACNNNNNCTCC 3 cut(s) 410, 440, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 118, 414
BseAI TCCGGA 1 cut(s) 491
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 115
BseNI ACTGG 2 cut(s) 118, 414
BseRI GAGGAG 2 cut(s) 68, 71
BseXI GCAGC 6 cut(s) 132, 180, 318, 374, 490, 524
BsgI GTGCAG 2 cut(s) 381, 482
BshFI GGCC 2 cut(s) 441, 462
BshNI GGYRCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 2 cut(s) 319, 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 2 cut(s) 441, 462
Bsp13I TCCGGA 1 cut(s) 491
Bsp143I GATC 4 cut(s) 6, 42, 286, 393
Bsp19I CCATGG 1 cut(s) 122
BspACI CCGC 6 cut(s) 185, 191, 218, 387, 467, 515
BspANI GGCC 2 cut(s) 441, 462
BspEI TCCGGA 1 cut(s) 491
BspLI GGNNCC 3 cut(s) 107, 120, 189
BspPI GGATC 2 cut(s) 294, 401
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 2 cut(s) 118, 414
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 4 cut(s) 6, 42, 286, 393
BssNI GRCGYC 2 cut(s) 188, 422
BssT1I CCWWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 313, 535
BstACI GRCGYC 2 cut(s) 188, 422
BstC8I GCNNGC 1 cut(s) 501
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 2 cut(s) 190, 234
BstKTI GATC 4 cut(s) 9, 45, 289, 396
BstMAI GTCTC 2 cut(s) 319, 524
BstMBI GATC 4 cut(s) 6, 42, 286, 393
BstMWI GCNNNNNNNGC 3 cut(s) 182, 509, 512
BstV1I GCAGC 6 cut(s) 132, 180, 318, 374, 490, 524
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
BsuRI GGCC 2 cut(s) 441, 462
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 1 cut(s) 501
CfoI GCGC 2 cut(s) 190, 234
Cfr13I GGNCC 4 cut(s) 106, 119, 439, 460
CseI GACGC 1 cut(s) 411
CviAII CATG 3 cut(s) 123, 383, 543
CviJI RGCY 7 cut(s) 155, 168, 292, 331, 355, 441, 462
CviKI_1 RGCY 7 cut(s) 155, 168, 292, 331, 355, 441, 462
DinI GGCGCC 1 cut(s) 189
DpnI GATC 4 cut(s) 8, 44, 288, 395
DpnII GATC 4 cut(s) 6, 42, 286, 393
Eco130I CCWWGG 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 106, 119
EcoO109I RGGNCCY 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 189
EheI GGCGCC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 3 cut(s) 126, 386, 546
FaiI YATR 9 cut(s) 124, 143, 162, 242, 246, 339, 351, 384, 544
FaqI GGGAC 1 cut(s) 538
FatI CATG 3 cut(s) 122, 382, 542
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 8 cut(s) 146, 186, 191, 194, 332, 363, 504, 513
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 8 cut(s) 146, 186, 191, 194, 332, 363, 504, 513
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 2 cut(s) 189, 233
GluI GCNGC 8 cut(s) 146, 186, 191, 194, 332, 363, 504, 513
GsuI CTGGAG 1 cut(s) 431
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 2 cut(s) 441, 462
HapII CCGG 1 cut(s) 492
HgaI GACGC 1 cut(s) 411
HhaI GCGC 2 cut(s) 190, 234
Hin1I GRCGYC 2 cut(s) 188, 422
Hin1II CATG 3 cut(s) 126, 386, 546
Hin6I GCGC 2 cut(s) 188, 232
HinP1I GCGC 2 cut(s) 188, 232
HinfI GANTC 3 cut(s) 100, 455, 482
HpaII CCGG 1 cut(s) 492
HphI GGTGA 3 cut(s) 106, 297, 331
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 3 cut(s) 40, 179, 492
Hpy99I CGWCG 1 cut(s) 427
HpyCH4III ACNGT 2 cut(s) 313, 535
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 6 cut(s) 196, 244, 334, 362, 449, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 509, 512
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 2 cut(s) 188, 422
Hsp92II CATG 3 cut(s) 126, 386, 546
HspAI GCGC 2 cut(s) 188, 232
KasI GGCGCC 1 cut(s) 187
Kpn2I TCCGGA 1 cut(s) 491
Kzo9I GATC 4 cut(s) 6, 42, 286, 393
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 6 cut(s) 31, 35, 99, 395, 446, 505
Lsp1109I GCAGC 6 cut(s) 132, 180, 318, 374, 490, 524
LweI GCATC 3 cut(s) 172, 205, 436
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 398
MalI GATC 4 cut(s) 8, 44, 288, 395
MboI GATC 4 cut(s) 6, 42, 286, 393
MboII GAAGA 2 cut(s) 109, 367
MflI RGATCY 1 cut(s) 393
MluCI AATT 1 cut(s) 77
Mly113I GGCGCC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 7 cut(s) 46, 49, 52, 85, 199, 406, 412
Mph1103I ATGCAT 1 cut(s) 246
MroI TCCGGA 1 cut(s) 491
MseI TTAA 3 cut(s) 26, 81, 260
MslI CAYNNNNRTG 2 cut(s) 239, 387
MspA1I CMGCKG 2 cut(s) 193, 515
MspI CCGG 1 cut(s) 492
MwoI GCNNNNNNNGC 3 cut(s) 182, 509, 512
NarI GGCGCC 1 cut(s) 188
NcoI CCATGG 1 cut(s) 122
NdeII GATC 4 cut(s) 6, 42, 286, 393
NlaIII CATG 3 cut(s) 126, 386, 546
NlaIV GGNNCC 3 cut(s) 107, 120, 189
NmeAIII GCCGAG 1 cut(s) 467
NsbI TGCGCA 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 246
PfeI GAWTC 3 cut(s) 100, 455, 482
PflFI GACNNNGTC 1 cut(s) 535
PkrI GCNGC 8 cut(s) 147, 187, 192, 195, 333, 364, 505, 514
PluTI GGCGCC 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 106
Psp1406I AACGTT 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 106
PspN4I GGNNCC 3 cut(s) 107, 120, 189
PspPI GGNCC 4 cut(s) 106, 119, 439, 460
PspPPI RGGWCCY 1 cut(s) 106
PsuI RGATCY 1 cut(s) 393
PsyI GACNNNGTC 1 cut(s) 535
RseI CAYNNNNRTG 2 cut(s) 239, 387
SaqAI TTAA 3 cut(s) 26, 81, 260
SatI GCNGC 8 cut(s) 146, 186, 191, 194, 332, 363, 504, 513
Sau3AI GATC 4 cut(s) 6, 42, 286, 393
Sau96I GGNCC 4 cut(s) 106, 119, 439, 460
SetI ASST 7 cut(s) 18, 96, 170, 210, 333, 417, 435
SfaNI GCATC 3 cut(s) 172, 205, 436
SfoI GGCGCC 1 cut(s) 189
SinI GGWCC 2 cut(s) 106, 119
SmiMI CAYNNNNRTG 2 cut(s) 239, 387
Sse9I AATT 1 cut(s) 77
SsiI CCGC 6 cut(s) 185, 191, 218, 387, 467, 515
SspDI GGCGCC 1 cut(s) 187
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 313, 535
TaiI ACGT 1 cut(s) 18
TaqII GACCGA 1 cut(s) 368
TasI AATT 1 cut(s) 77
TauI GCSGC 2 cut(s) 188, 193
TfiI GAWTC 3 cut(s) 100, 455, 482
Tru1I TTAA 3 cut(s) 26, 81, 260
Tru9I TTAA 3 cut(s) 26, 81, 260
TscAI CASTG 1 cut(s) 456
TseI GCWGC 6 cut(s) 145, 193, 331, 362, 503, 512
TspGWI ACGGA 1 cut(s) 542
TspRI CASTG 1 cut(s) 456
Tth111I GACNNNGTC 1 cut(s) 535
VpaK11BI GGWCC 2 cut(s) 106, 119
XapI RAATTY 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.