MD01G1108300.v1.1

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0009315
Physical Location & Seq
Reverse (-)
22117920 .. 22120431
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1108300.v1.1.491

Sequence Viewer

Length: 885 bp
ATGCGGACGATACCGTTGGGAATATCAGCAGCATCCCCAACCTCCTTAAACAGCTCCTTCCTCAACACTCTCAACCTCAACAGACCAAACCCTCTTGTTCCTCTTAGTAATTCCACTTCTTCCAGGGTTCCTGTTCCTGCCTCCACCTCCACTGATGACTTTTCTCTCCTTCACTTCTCCAAATCTGGAGTTTGCAGAGCCAGTCAAGTGGCTGATTTATTTCCCACGGTGTCTCCCGAGATTGTGGTCCGGGAGGCACGGTTGGAGGATTGTTGGGAGGTGGCTGAGACTCACTGCAGCTCTTTCTTCCCCGAGTATTCTTTTCCCTTGGACTTTGTTTTGAGGATTGACCGGCTGGTGGGGATGCTGGCCGGATTTTCTCTGCCGAATGGTTGTAAGAGAACTTGTCTGGTTGCTGTGATTGGTAATGCTGGTTATGAAACGTTCCTCTTTGGGAGTGATGATTTCAAGGTTGGCGGTTTTGATGGGAAGTTCAATCTCAATAGGAGGTATGTGGCTGGAATATTGACTGTAGATACTGTTGCTGATTTTCTTCCGAGAAAAGGACCTCTTCGTCAGAGAAGGACTGGAGTTGCGTACGTATCAAACGTTGCTGTCCGGGAGACATTTCGACGAAGAGGAATAGCTAAAAGGCTAATAGCAAAGGCAGAAGCCCAAGCCAGGAGCTGGGATTGCCGTGCCATTGCACTGCACTGCGACTTGAACAATCCCGGGGCCATAAAGCTGTACAAAGGCCAGGGTTTTAAAAGCATCAAGGTGCCGGAAGGAGCGAACTGGCCCCAGCCCAAGACCGGTCCGGACGTTCGCTTCAACTTCATGATGAAGCTTCTGAACCCCAAAACTGCTGGCTTAAGAAACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

295

Amino Acids

32.36

Weight (kDa)

9.68

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 193 - 255 6.9e-16 Acetyltransferase (GNAT) family
Acetyltransf_10 PF13673 197 - 260 2.3e-06 Acetyltransferase (GNAT) domain
Acetyltransf_7 PF13508 198 - 256 3.5e-09 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39000 AT2G39000 AT2G39000 AT2G39000
fragaria_vesca FvH4_7g19440 FvH4_7g19440 FvH4_7g19440
malus_domestica MD01G1108300.v1.1 MD07G1174400.v1.1
prunus_persica Prupe.2G213200_v2.0.a1
pyrus_communis pycom01g13520 pycom07g16860
rosa_chinensis RchiOBHm_Chr1g0363321
rosa_laevigata RLG00000027574
rosa_multiflora Rmu_sc0011095.1_g000002
rosa_roxburghii Rroxscaffold_4G00293280
rosa_rugosa Rorug01G0306300
rosa_samantha Rh1AG315100 Rh1BG278300 Rh1CG294800 Rh1DG309400
rosa_wichuraiana Rw1G027920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 778
AccB7I CCANNNNNTGG 1 cut(s) 687
AccIII TCCGGA 1 cut(s) 817
AciI CCGC 2 cut(s) 4, 477
AclI AACGTT 2 cut(s) 443, 609
AcoI YGGCCR 1 cut(s) 369
AfaI GTAC 2 cut(s) 599, 749
AfiI CCNNNNNNNGG 5 cut(s) 358, 563, 681, 687, 812
AflII CTTAAG 1 cut(s) 871
AgeI ACCGGT 1 cut(s) 812
AgsI TTSAA 4 cut(s) 469, 496, 724, 832
AjnI CCWGG 3 cut(s) 122, 680, 756
AluBI AGCT 6 cut(s) 54, 300, 647, 687, 745, 847
AluI AGCT 6 cut(s) 54, 300, 647, 687, 745, 847
Alw26I GTCTC 3 cut(s) 237, 281, 617
AlwNI CAGNNNCTG 1 cut(s) 687
Ama87I CYCGRG 3 cut(s) 236, 311, 731
Aor13HI TCCGGA 1 cut(s) 817
AoxI GGCC 4 cut(s) 369, 735, 754, 797
ApeKI GCWGC 2 cut(s) 29, 297
AsiGI ACCGGT 1 cut(s) 812
AspS9I GGNCC 5 cut(s) 247, 566, 735, 798, 815
AsuC2I CCSGG 4 cut(s) 251, 620, 732, 733
AvaI CYCGRG 3 cut(s) 236, 311, 731
AvaII GGWCC 3 cut(s) 247, 566, 815
BanI GGYRCC 1 cut(s) 778
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BbvI GCAGC 2 cut(s) 41, 309
BccI CCATC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 3 cut(s) 124, 682, 758
BcnI CCSGG 4 cut(s) 251, 620, 732, 733
BcoDI GTCTC 3 cut(s) 237, 281, 617
BfmI CTRYAG 2 cut(s) 295, 531
BfrI CTTAAG 1 cut(s) 871
BisI GCNGC 2 cut(s) 30, 298
BlsI GCNGC 2 cut(s) 31, 299
Bme1390I CCNGG 7 cut(s) 124, 251, 620, 682, 732, 733, 758
Bme18I GGWCC 3 cut(s) 247, 566, 815
BmeT110I CYCGRG 3 cut(s) 236, 311, 731
BmgT120I GGNCC 5 cut(s) 247, 566, 735, 798, 815
BmiI GGNNCC 4 cut(s) 129, 736, 780, 800
BmrFI CCNGG 7 cut(s) 124, 251, 620, 682, 732, 733, 758
BmsI GCATC 3 cut(s) 41, 354, 780
BpmI CTGGAG 2 cut(s) 207, 609
BpuMI CCSGG 4 cut(s) 251, 620, 732, 733
BsaAI YACGTR 1 cut(s) 601
BsaJI CCNNGG 6 cut(s) 123, 225, 327, 731, 732, 757
BsaWI WCCGGW 2 cut(s) 812, 817
BsaXI ACNNNNNCTCC 4 cut(s) 217, 245, 247, 275
Bsc4I CCNNNNNNNGG 5 cut(s) 358, 563, 681, 687, 812
Bse118I RCCGGY 2 cut(s) 351, 812
Bse1I ACTGG 3 cut(s) 201, 592, 800
Bse3DI GCAATG 1 cut(s) 702
BseAI TCCGGA 1 cut(s) 817
BseBI CCWGG 3 cut(s) 124, 682, 758
BseDI CCNNGG 6 cut(s) 123, 225, 327, 731, 732, 757
BseGI GGATG 2 cut(s) 32, 369
BseLI CCNNNNNNNGG 5 cut(s) 358, 563, 681, 687, 812
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 3 cut(s) 201, 592, 800
BseXI GCAGC 2 cut(s) 41, 309
BseYI CCCAGC 2 cut(s) 687, 801
BsgI GTGCAG 1 cut(s) 695
BshFI GGCC 4 cut(s) 371, 737, 756, 799
BshNI GGYRCC 1 cut(s) 778
BshTI ACCGGT 1 cut(s) 812
BsiHKCI CYCGRG 3 cut(s) 236, 311, 731
BsiSI CCGG 8 cut(s) 250, 352, 372, 619, 732, 782, 813, 818
BsiWI CGTACG 1 cut(s) 597
BslI CCNNNNNNNGG 5 cut(s) 358, 563, 681, 687, 812
BsmAI GTCTC 3 cut(s) 237, 281, 617
BsnI GGCC 4 cut(s) 371, 737, 756, 799
BsoBI CYCGRG 3 cut(s) 236, 311, 731
Bsp13I TCCGGA 1 cut(s) 817
Bsp1407I TGTACA 1 cut(s) 747
BspACI CCGC 2 cut(s) 4, 477
BspANI GGCC 4 cut(s) 371, 737, 756, 799
BspCNI CTCAG 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 817
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 4 cut(s) 129, 736, 780, 800
BspMAI CTGCAG 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 778
BspTI CTTAAG 1 cut(s) 871
BsrDI GCAATG 1 cut(s) 702
BsrFI RCCGGY 2 cut(s) 351, 812
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 3 cut(s) 201, 592, 800
BssAI RCCGGY 2 cut(s) 351, 812
BssECI CCNNGG 6 cut(s) 123, 225, 327, 731, 732, 757
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 3 cut(s) 124, 682, 758
Bst4CI ACNGT 5 cut(s) 15, 229, 261, 532, 541
Bst6I CTCTTC 2 cut(s) 576, 631
BstAFI CTTAAG 1 cut(s) 871
BstAUI TGTACA 1 cut(s) 747
BstBAI YACGTR 1 cut(s) 601
BstC8I GCNNGC 2 cut(s) 369, 868
BstDEI CTNAG 2 cut(s) 104, 285
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 32, 369
BstMAI GTCTC 3 cut(s) 237, 281, 617
BstMWI GCNNNNNNNGC 1 cut(s) 693
BstNI CCWGG 3 cut(s) 124, 682, 758
BstSCI CCNGG 7 cut(s) 122, 249, 618, 680, 730, 731, 756
BstSFI CTRYAG 2 cut(s) 295, 531
BstSNI TACGTA 1 cut(s) 601
BstV1I GCAGC 2 cut(s) 41, 309
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuRI GGCC 4 cut(s) 371, 737, 756, 799
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 2 cut(s) 32, 369
BtsI GCAGTG 3 cut(s) 292, 707, 712
BtsIMutI CAGTG 4 cut(s) 150, 292, 707, 712
Cac8I GCNNGC 2 cut(s) 369, 868
CaiI CAGNNNCTG 1 cut(s) 687
CciI TCATGA 1 cut(s) 837
Cfr10I RCCGGY 2 cut(s) 351, 812
Cfr13I GGNCC 5 cut(s) 247, 566, 735, 798, 815
Cfr9I CCCGGG 1 cut(s) 731
CpoI CGGWCCG 1 cut(s) 815
Csp6I GTAC 2 cut(s) 598, 748
CspAI ACCGGT 1 cut(s) 812
CspI CGGWCCG 1 cut(s) 815
CviAII CATG 1 cut(s) 838
CviQI GTAC 2 cut(s) 598, 748
DdeI CTNAG 2 cut(s) 104, 285
DraI TTTAAA 1 cut(s) 766
DrdI GACNNNNNNGTC 1 cut(s) 573
DseDI GACNNNNNNGTC 1 cut(s) 573
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 576, 631
EarI CTCTTC 2 cut(s) 576, 631
Eco105I TACGTA 1 cut(s) 601
Eco130I CCWWGG 1 cut(s) 327
Eco47I GGWCC 3 cut(s) 247, 566, 815
Eco88I CYCGRG 3 cut(s) 236, 311, 731
EcoO109I RGGNCCY 1 cut(s) 566
EcoRII CCWGG 3 cut(s) 122, 680, 756
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 1 cut(s) 841
FaiI YATR 4 cut(s) 438, 513, 740, 839
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 1 cut(s) 837
Fnu4HI GCNGC 2 cut(s) 30, 298
FokI GGATG 2 cut(s) 19, 376
Fsp4HI GCNGC 2 cut(s) 30, 298
GluI GCNGC 2 cut(s) 30, 298
GsaI CCCAGC 2 cut(s) 691, 805
GsuI CTGGAG 2 cut(s) 207, 609
HaeIII GGCC 4 cut(s) 371, 737, 756, 799
HapII CCGG 8 cut(s) 250, 352, 372, 619, 732, 782, 813, 818
Hin1II CATG 1 cut(s) 841
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 1 cut(s) 289
HpaII CCGG 8 cut(s) 250, 352, 372, 619, 732, 782, 813, 818
Hpy188I TCNGA 3 cut(s) 558, 579, 852
Hpy188III TCNNGA 4 cut(s) 186, 236, 818, 838
Hpy99I CGWCG 1 cut(s) 636
HpyAV CCTTC 4 cut(s) 67, 179, 576, 779
HpyCH4III ACNGT 5 cut(s) 15, 229, 261, 532, 541
HpyCH4IV ACGT 4 cut(s) 443, 600, 609, 822
HpyCH4V TGCA 4 cut(s) 195, 297, 707, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 693
HpyF3I CTNAG 2 cut(s) 104, 285
HpySE526I ACGT 4 cut(s) 443, 600, 609, 822
Hsp92II CATG 1 cut(s) 841
Kpn2I TCCGGA 1 cut(s) 817
LmnI GCTCC 3 cut(s) 59, 684, 788
Lsp1109I GCAGC 2 cut(s) 41, 309
LweI GCATC 3 cut(s) 41, 354, 780
MaeII ACGT 4 cut(s) 443, 600, 609, 822
MboII GAAGA 5 cut(s) 111, 298, 545, 563, 648
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 243
MroI TCCGGA 1 cut(s) 817
MseI TTAA 3 cut(s) 47, 765, 872
MslI CAYNNNNRTG 1 cut(s) 776
MspCI CTTAAG 1 cut(s) 871
MspI CCGG 8 cut(s) 250, 352, 372, 619, 732, 782, 813, 818
MspR9I CCNGG 7 cut(s) 124, 251, 620, 682, 732, 733, 758
MvaI CCWGG 3 cut(s) 124, 682, 758
MwoI GCNNNNNNNGC 1 cut(s) 693
NciI CCSGG 4 cut(s) 251, 620, 732, 733
NlaIII CATG 1 cut(s) 841
NlaIV GGNNCC 4 cut(s) 129, 736, 780, 800
PagI TCATGA 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 606
Pfl23II CGTACG 1 cut(s) 597
PflMI CCANNNNNTGG 1 cut(s) 687
PfoI TCCNGGA 2 cut(s) 249, 618
PinAI ACCGGT 1 cut(s) 812
PkrI GCNGC 2 cut(s) 31, 299
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 601
PpuMI RGGWCCY 1 cut(s) 566
Psp1406I AACGTT 2 cut(s) 443, 609
Psp5II RGGWCCY 1 cut(s) 566
Psp6I CCWGG 3 cut(s) 122, 680, 756
PspFI CCCAGC 2 cut(s) 687, 801
PspGI CCWGG 3 cut(s) 122, 680, 756
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 4 cut(s) 129, 736, 780, 800
PspPI GGNCC 5 cut(s) 247, 566, 735, 798, 815
PspPPI RGGWCCY 1 cut(s) 566
PstI CTGCAG 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 687
RsaI GTAC 2 cut(s) 599, 749
RsaNI GTAC 2 cut(s) 598, 748
RseI CAYNNNNRTG 1 cut(s) 776
Rsr2I CGGWCCG 1 cut(s) 815
RsrII CGGWCCG 1 cut(s) 815
SaqAI TTAA 3 cut(s) 47, 765, 872
SatI GCNGC 2 cut(s) 30, 298
Sau96I GGNCC 5 cut(s) 247, 566, 735, 798, 815
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 7 cut(s) 124, 251, 620, 682, 732, 733, 758
SfaNI GCATC 3 cut(s) 41, 354, 780
SfcI CTRYAG 2 cut(s) 295, 531
SinI GGWCC 3 cut(s) 247, 566, 815
SmaI CCCGGG 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
SnaBI TACGTA 1 cut(s) 601
Sse9I AATT 1 cut(s) 109
SsiI CCGC 2 cut(s) 4, 477
SspI AATATT 1 cut(s) 525
StyD4I CCNGG 7 cut(s) 122, 249, 618, 680, 730, 731, 756
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 5 cut(s) 15, 229, 261, 532, 541
TaiI ACGT 4 cut(s) 446, 603, 612, 825
TaqI TCGA 1 cut(s) 631
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 747
Tru1I TTAA 3 cut(s) 47, 765, 872
Tru9I TTAA 3 cut(s) 47, 765, 872
TscAI CASTG 4 cut(s) 157, 299, 714, 719
TseI GCWGC 2 cut(s) 29, 297
TspDTI ATGAA 3 cut(s) 453, 826, 857
TspMI CCCGGG 1 cut(s) 731
TspRI CASTG 4 cut(s) 157, 299, 714, 719
Van91I CCANNNNNTGG 1 cut(s) 687
Vha464I CTTAAG 1 cut(s) 871
VpaK11BI GGWCC 3 cut(s) 247, 566, 815
XmaI CCCGGG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.