Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009315

Physical Location & Seq

Genomic Coordinates Reverse (-)

25218471 .. 25220575

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1174400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCGGACGATACCGTTGGGAATATCAGCAGCATCCCCAACCTCCTTAAACAGCTCCTTCCTCAACAGTCTCAACCTCAACAGACCAAACCCTCTTGTTCCTCTTACTAGTTCCACTTCTTCCAGGGTTCCTGTTCCTGTTTCTGTTCCTGTTCCTGCCTACACTTCCCCTGATGACCTCTCTTTCCTTAACTTCTCCAAATCTGGAGTTTGCAGAGCCAGTCAAGTGGCTGATTTATTTCCCACGGTGTCTCCTGAGATTGTGGTCCGGGAGGCGCGGGTAGAGGACTGTTGGGAGGTGGCTGAGACACATTGCAGCTCCTTCTTCCCCGAGTATTCTTTCCCCTTAGATTTTGTTCTGAGGATTGACCGGCTGGTGGCAATGCTGGCCGGATTTTCTTTGCCAAATGGTTGTAAGAGGACTTGTCTGGTTGCTGTGATTGGTAATGCTGGTGATGAAACGTTCCTCTTCGGGAGGGATGATTTTAAGGTTGGCGGTTTTGATGGGAAGTTCAGTCTCAGTAGGAGGTATGTGGCTGGAATATTGACTGTGGATACTGTTGCTGATTTTCTTCCGAGAAAGGGGCCTCTTCGGCAGAGAAGGAAAGGAGTTGCATACGTGTCAAACGTTGCTGTCCGGGAGAGTTTTCGGCGAAGAGGAATAGCTAAAAGGCTAATAGCAAAAGCAGAAGCCCAAGCCAGGAGCTGGGATTGCCGTGCCATTGCATTGCACTGCGACTTGAACAACCCCGGTGCCGTAAAGCTGTACAAAGGCCAGGGTTTCAAAAGCATCAAGGTGCCTGAAGGAGCAAACTGGCCCCAGCCCAAGACCGGTCCGGATGTTCGGTTCAACTTCATGATGAAGCTTCTGAACCCCAAGATTTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

297

Amino Acids

32.46

Weight (kDa)

9.73

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	199 - 261	6.7e-16	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	199 - 266	8.7e-08	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	204 - 262	3.4e-09	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39000 AT2G39000 AT2G39000 AT2G39000
fragaria_vesca	FvH4_7g19440 FvH4_7g19440 FvH4_7g19440
malus_domestica	MD01G1108300.v1.1 MD07G1174400.v1.1
prunus_persica	Prupe.2G213200_v2.0.a1
pyrus_communis	pycom01g13520 pycom07g16860
rosa_chinensis	RchiOBHm_Chr1g0363321
rosa_laevigata	RLG00000027574
rosa_multiflora	Rmu_sc0011095.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293280
rosa_rugosa	Rorug01G0306300
rosa_samantha	Rh1AG315100 Rh1BG278300 Rh1CG294800 Rh1DG309400
rosa_wichuraiana	Rw1G027920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	752, 796
AccB7I	CCANNNNNTGG	1 cut(s)	705
AccII	CGCG	1 cut(s)	277
AccIII	TCCGGA	1 cut(s)	835
AciI	CCGC	3 cut(s)	4, 277, 495
AclI	AACGTT	2 cut(s)	461, 627
AcoI	YGGCCR	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	5 cut(s)	376, 581, 699, 705, 830
AflIII	ACRYGT	1 cut(s)	618
AgeI	ACCGGT	1 cut(s)	830
AgsI	TTSAA	3 cut(s)	742, 784, 850
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	3 cut(s)	122, 698, 774
AloI	GAACNNNNNNTCC	2 cut(s)	830, 862
AluBI	AGCT	6 cut(s)	54, 318, 665, 705, 763, 865
AluI	AGCT	6 cut(s)	54, 318, 665, 705, 763, 865
Alw26I	GTCTC	4 cut(s)	74, 255, 299, 521
AlwNI	CAGNNNCTG	1 cut(s)	705
Ama87I	CYCGRG	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	835
AoxI	GGCC	4 cut(s)	387, 584, 772, 815
ApeKI	GCWGC	2 cut(s)	29, 315
AsiGI	ACCGGT	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	4 cut(s)	265, 584, 816, 833
AsuC2I	CCSGG	3 cut(s)	269, 638, 750
AsuHPI	GGTGA	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	2 cut(s)	265, 833
BanI	GGYRCC	2 cut(s)	752, 796
BbvI	GCAGC	2 cut(s)	41, 327
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	2 cut(s)	699, 740
BciT130I	CCWGG	3 cut(s)	124, 700, 776
BciVI	GTATCC	1 cut(s)	547
BcnI	CCSGG	3 cut(s)	269, 638, 750
BcoDI	GTCTC	4 cut(s)	74, 255, 299, 521
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	547
BglI	GCCNNNNNGGC	1 cut(s)	592
BisI	GCNGC	2 cut(s)	30, 316
BlsI	GCNGC	2 cut(s)	31, 317
Bme1390I	CCNGG	6 cut(s)	124, 269, 638, 700, 750, 776
Bme18I	GGWCC	2 cut(s)	265, 833
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	4 cut(s)	265, 584, 816, 833
BmiI	GGNNCC	5 cut(s)	129, 585, 754, 798, 818
BmrFI	CCNGG	6 cut(s)	124, 269, 638, 700, 750, 776
BmsI	GCATC	2 cut(s)	41, 798
BpmI	CTGGAG	1 cut(s)	225
BpuMI	CCSGG	3 cut(s)	269, 638, 750
BsaAI	YACGTR	1 cut(s)	619
BsaJI	CCNNGG	4 cut(s)	123, 243, 748, 775
BsaWI	WCCGGW	2 cut(s)	830, 835
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	5 cut(s)	376, 581, 699, 705, 830
Bse118I	RCCGGY	2 cut(s)	369, 830
Bse1I	ACTGG	2 cut(s)	219, 818
Bse3DI	GCAATG	4 cut(s)	310, 387, 720, 725
BseAI	TCCGGA	1 cut(s)	835
BseBI	CCWGG	3 cut(s)	124, 700, 776
BseDI	CCNNGG	4 cut(s)	123, 243, 748, 775
BseGI	GGATG	3 cut(s)	32, 484, 844
BseLI	CCNNNNNNNGG	5 cut(s)	376, 581, 699, 705, 830
BseMI	GCAATG	4 cut(s)	310, 387, 720, 725
BseMII	CTCAG	4 cut(s)	246, 294, 350, 532
BseNI	ACTGG	2 cut(s)	219, 818
BseXI	GCAGC	2 cut(s)	41, 327
BseYI	CCCAGC	2 cut(s)	705, 819
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	4 cut(s)	389, 586, 774, 817
BshNI	GGYRCC	2 cut(s)	752, 796
BshTI	ACCGGT	1 cut(s)	830
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	7 cut(s)	268, 370, 390, 637, 750, 831, 836
BslI	CCNNNNNNNGG	5 cut(s)	376, 581, 699, 705, 830
BsmAI	GTCTC	4 cut(s)	74, 255, 299, 521
BsnI	GGCC	4 cut(s)	389, 586, 774, 817
BsoBI	CYCGRG	1 cut(s)	329
Bsp13I	TCCGGA	1 cut(s)	835
Bsp1407I	TGTACA	1 cut(s)	765
BspACI	CCGC	3 cut(s)	4, 277, 495
BspANI	GGCC	4 cut(s)	389, 586, 774, 817
BspCNI	CTCAG	4 cut(s)	247, 295, 351, 531
BspEI	TCCGGA	1 cut(s)	835
BspFNI	CGCG	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	5 cut(s)	129, 585, 754, 798, 818
BspT107I	GGYRCC	2 cut(s)	752, 796
BsrDI	GCAATG	4 cut(s)	310, 387, 720, 725
BsrFI	RCCGGY	2 cut(s)	369, 830
BsrGI	TGTACA	1 cut(s)	765
BsrI	ACTGG	2 cut(s)	219, 818
BssAI	RCCGGY	2 cut(s)	369, 830
BssECI	CCNNGG	4 cut(s)	123, 243, 748, 775
Bst2UI	CCWGG	3 cut(s)	124, 700, 776
Bst4CI	ACNGT	6 cut(s)	15, 68, 247, 290, 550, 559
Bst6I	CTCTTC	3 cut(s)	473, 594, 649
BstAUI	TGTACA	1 cut(s)	765
BstBAI	YACGTR	1 cut(s)	619
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	6 cut(s)	255, 303, 346, 359, 518, 888
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	32, 484, 844
BstFNI	CGCG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	277
BstMAI	GTCTC	4 cut(s)	74, 255, 299, 521
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 592, 711
BstNI	CCWGG	3 cut(s)	124, 700, 776
BstSCI	CCNGG	6 cut(s)	122, 267, 636, 698, 748, 774
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	41, 327
BstXI	CCANNNNNNTGG	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	4 cut(s)	389, 586, 774, 817
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	32, 484, 844
BtsI	GCAGTG	1 cut(s)	730
BtsIMutI	CAGTG	1 cut(s)	730
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	705
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	2 cut(s)	369, 830
Cfr13I	GGNCC	4 cut(s)	265, 584, 816, 833
CpoI	CGGWCCG	1 cut(s)	833
Csp6I	GTAC	1 cut(s)	766
CspAI	ACCGGT	1 cut(s)	830
CspI	CGGWCCG	1 cut(s)	833
CviAII	CATG	1 cut(s)	856
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	6 cut(s)	255, 303, 346, 359, 518, 888
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	3 cut(s)	473, 594, 649
EarI	CTCTTC	3 cut(s)	473, 594, 649
Eco47I	GGWCC	2 cut(s)	265, 833
Eco57I	CTGAAG	1 cut(s)	822
Eco88I	CYCGRG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	122, 698, 774
FaeI	CATG	1 cut(s)	859
FaiI	YATR	3 cut(s)	531, 616, 857
FatI	CATG	1 cut(s)	855
FauI	CCCGC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	30, 316
FokI	GGATG	3 cut(s)	19, 491, 851
Fsp4HI	GCNGC	2 cut(s)	30, 316
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	30, 316
GsaI	CCCAGC	2 cut(s)	709, 823
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	389, 586, 774, 817
HapII	CCGG	7 cut(s)	268, 370, 390, 637, 750, 831, 836
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	859
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	863
HpaII	CCGG	7 cut(s)	268, 370, 390, 637, 750, 831, 836
HphI	GGTGA	1 cut(s)	464
Hpy188I	TCNGA	3 cut(s)	360, 576, 870
Hpy188III	TCNNGA	5 cut(s)	204, 254, 472, 836, 856
HpyAV	CCTTC	4 cut(s)	67, 331, 594, 797
HpyCH4III	ACNGT	6 cut(s)	15, 68, 247, 290, 550, 559
HpyCH4IV	ACGT	3 cut(s)	461, 618, 627
HpyCH4V	TGCA	5 cut(s)	213, 315, 614, 725, 730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 592, 711
HpyF3I	CTNAG	6 cut(s)	255, 303, 346, 359, 518, 888
HpySE526I	ACGT	3 cut(s)	461, 618, 627
Hsp92II	CATG	1 cut(s)	859
HspAI	GCGC	1 cut(s)	275
Kpn2I	TCCGGA	1 cut(s)	835
LmnI	GCTCC	4 cut(s)	59, 323, 702, 806
Lsp1109I	GCAGC	2 cut(s)	41, 327
LweI	GCATC	2 cut(s)	41, 798
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	3 cut(s)	461, 618, 627
MboII	GAAGA	6 cut(s)	111, 316, 460, 563, 581, 666
MroI	TCCGGA	1 cut(s)	835
MseI	TTAA	3 cut(s)	47, 189, 486
MslI	CAYNNNNRTG	1 cut(s)	794
MspI	CCGG	7 cut(s)	268, 370, 390, 637, 750, 831, 836
MspR9I	CCNGG	6 cut(s)	124, 269, 638, 700, 750, 776
MvaI	CCWGG	3 cut(s)	124, 700, 776
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	386, 592, 711
NciI	CCSGG	3 cut(s)	269, 638, 750
NlaIII	CATG	1 cut(s)	859
NlaIV	GGNNCC	5 cut(s)	129, 585, 754, 798, 818
PagI	TCATGA	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PflMI	CCANNNNNTGG	1 cut(s)	705
PfoI	TCCNGGA	2 cut(s)	267, 636
PinAI	ACCGGT	1 cut(s)	830
PkrI	GCNGC	2 cut(s)	31, 317
Ppu21I	YACGTR	1 cut(s)	619
Psp1406I	AACGTT	2 cut(s)	461, 627
Psp6I	CCWGG	3 cut(s)	122, 698, 774
PspFI	CCCAGC	2 cut(s)	705, 819
PspGI	CCWGG	3 cut(s)	122, 698, 774
PspN4I	GGNNCC	5 cut(s)	129, 585, 754, 798, 818
PspPI	GGNCC	4 cut(s)	265, 584, 816, 833
PstNI	CAGNNNCTG	1 cut(s)	705
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
RseI	CAYNNNNRTG	1 cut(s)	794
Rsr2I	CGGWCCG	1 cut(s)	833
RsrII	CGGWCCG	1 cut(s)	833
SaqAI	TTAA	3 cut(s)	47, 189, 486
SatI	GCNGC	2 cut(s)	30, 316
Sau96I	GGNCC	4 cut(s)	265, 584, 816, 833
ScrFI	CCNGG	6 cut(s)	124, 269, 638, 700, 750, 776
SfaNI	GCATC	2 cut(s)	41, 798
SinI	GGWCC	2 cut(s)	265, 833
SmiMI	CAYNNNNRTG	1 cut(s)	794
SpeI	ACTAGT	1 cut(s)	107
SsiI	CCGC	3 cut(s)	4, 277, 495
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	6 cut(s)	122, 267, 636, 698, 748, 774
TaaI	ACNGT	6 cut(s)	15, 68, 247, 290, 550, 559
TaiI	ACGT	3 cut(s)	464, 621, 630
TatI	WGTACW	1 cut(s)	765
Tru1I	TTAA	3 cut(s)	47, 189, 486
Tru9I	TTAA	3 cut(s)	47, 189, 486
TscAI	CASTG	1 cut(s)	737
TseI	GCWGC	2 cut(s)	29, 315
TspDTI	ATGAA	3 cut(s)	471, 844, 875
TspRI	CASTG	1 cut(s)	737
Van91I	CCANNNNNTGG	1 cut(s)	705
VpaK11BI	GGWCC	2 cut(s)	265, 833
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.