Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009315

Physical Location & Seq

Genomic Coordinates Reverse (-)

16033711 .. 16036417

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCGGACCATACCGTTGGGAATCTCAGTGTCCCCAACCTCCATCAACACCACTCTCAACCTTAAACGACCAAACCACTTCCCTCTTTCCACTTCCACTTCCACTTCTAGGGTTTCTGCTTCTTCATCCACTGATCATTTCTCTCTCTTCTCCTTCTCCAAATCTGGAGTTTGCAGAGCTAGTCAAGTGGCTGATCTATTTCCAGCCGTGTCTCCCGAAATTGTTGTTCGAGAGGCAAGGTTAGAGGACTGTTGGGAGGTTGCCGAGACTCATTGCAGCTCTTTCTTCCCTGAATATGCTTTCCCTTTGGATTTTGTACTTAGGGTTGACCGGCTGGTGGGAATGCTAGCCGGGTTTTCACTACCAAGTGGTTGCAAAAGGACTTGTCTGGTAGCAGTCATTGGAAACTCTGATAATGAAACTTTCCTCTTTGGAAGTGAAGATTTCAAGATTGCCGGTCTTGATGGGAAGATCAGTCTCAGTAAGAGGACTGGTATTGCATATGTATCAAACGTTGCTGTTCGGGAGAAATTTAGACGAAGAGGAATTGGGAAAAGGCTAATAGCGAAAGCAGAAGCTCAAGCGAGGAGCTGGGATTGCCGTGCCATAGCATTGCATTGTGATTTGAACAATCCGGGAGCTATAAAGCTGTACAAAGGTCAGGGTTTCAAATCTATTAAGATCCCTGAAGGAGCAACTTGGCCTCAGCCCAAGACCGCGCCGGATGTTAGATTCAACTTCATGATGAAGCTTCTGAACAACACTACTGCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

259

Amino Acids

28.29

Weight (kDa)

9.53

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_10	PF13673	134 - 226	6e-08	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	156 - 223	1.4e-16	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	156 - 224	8.9e-11	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39000 AT2G39000 AT2G39000 AT2G39000
fragaria_vesca	FvH4_7g19440 FvH4_7g19440 FvH4_7g19440
malus_domestica	MD01G1108300.v1.1 MD07G1174400.v1.1
prunus_persica	Prupe.2G213200_v2.0.a1
pyrus_communis	pycom01g13520 pycom07g16860
rosa_chinensis	RchiOBHm_Chr1g0363321
rosa_laevigata	RLG00000027574
rosa_multiflora	Rmu_sc0011095.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293280
rosa_rugosa	Rorug01G0306300
rosa_samantha	Rh1AG315100 Rh1BG278300 Rh1CG294800 Rh1DG309400
rosa_wichuraiana	Rw1G027920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	719
AciI	CCGC	2 cut(s)	4, 717
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	1 cut(s)	676
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	1 cut(s)	708
AfaI	GTAC	2 cut(s)	318, 653
AfiI	CCNNNNNNNGG	2 cut(s)	108, 337
AgsI	TTSAA	4 cut(s)	448, 628, 670, 736
AluBI	AGCT	7 cut(s)	179, 279, 578, 591, 641, 649, 751
AluI	AGCT	7 cut(s)	179, 279, 578, 591, 641, 649, 751
Alw26I	GTCTC	3 cut(s)	216, 260, 482
AlwI	GGATC	1 cut(s)	676
AoxI	GGCC	1 cut(s)	701
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	721
AspS9I	GGNCC	1 cut(s)	6
AsuC2I	CCSGG	2 cut(s)	352, 636
AsuNHI	GCTAGC	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	6
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	2 cut(s)	50, 458
BceAI	ACGGC	2 cut(s)	191, 585
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	2 cut(s)	352, 636
BcoDI	GTCTC	3 cut(s)	216, 260, 482
BfaI	CTAG	3 cut(s)	108, 180, 347
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	352, 636
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	352, 636
BmtI	GCTAGC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	564
BpuMI	CCSGG	2 cut(s)	352, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 337
Bse118I	RCCGGY	2 cut(s)	330, 455
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	2 cut(s)	271, 611
BseGI	GGATG	2 cut(s)	125, 730
BseLI	CCNNNNNNNGG	2 cut(s)	108, 337
BseMI	GCAATG	2 cut(s)	271, 611
BseMII	CTCAG	3 cut(s)	39, 493, 719
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	601
BseXI	GCAGC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	719
BshFI	GGCC	1 cut(s)	703
BsiSI	CCGG	5 cut(s)	331, 351, 456, 635, 722
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	108, 337
BsmAI	GTCTC	3 cut(s)	216, 260, 482
BsmFI	GGGAC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	703
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	4 cut(s)	133, 193, 471, 681
BspACI	CCGC	2 cut(s)	4, 717
BspANI	GGCC	1 cut(s)	703
BspCNI	CTCAG	3 cut(s)	38, 492, 718
BspFNI	CGCG	1 cut(s)	719
BspHI	TCATGA	1 cut(s)	741
BspOI	GCTAGC	1 cut(s)	350
BspPI	GGATC	1 cut(s)	676
BsrDI	GCAATG	2 cut(s)	271, 611
BsrFI	RCCGGY	2 cut(s)	330, 455
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	496
BssAI	RCCGGY	2 cut(s)	330, 455
BssMI	GATC	4 cut(s)	133, 193, 471, 681
Bst4CI	ACNGT	2 cut(s)	15, 251
Bst6I	CTCTTC	2 cut(s)	152, 535
BstAUI	TGTACA	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	4 cut(s)	25, 320, 479, 705
BstF5I	GGATG	2 cut(s)	125, 730
BstFNI	CGCG	1 cut(s)	719
BstHHI	GCGC	1 cut(s)	721
BstKTI	GATC	4 cut(s)	136, 196, 474, 684
BstMAI	GTCTC	3 cut(s)	216, 260, 482
BstMBI	GATC	4 cut(s)	133, 193, 471, 681
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstSCI	CCNGG	2 cut(s)	350, 634
BstUI	CGCG	1 cut(s)	719
BstV1I	GCAGC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	681
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	681
BsuRI	GGCC	1 cut(s)	703
BtsCI	GGATG	2 cut(s)	125, 730
BtsIMutI	CAGTG	2 cut(s)	33, 129
Cac8I	GCNNGC	1 cut(s)	348
CciI	TCATGA	1 cut(s)	741
CfoI	GCGC	1 cut(s)	721
Cfr10I	RCCGGY	2 cut(s)	330, 455
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	317, 652
CviAII	CATG	1 cut(s)	742
CviQI	GTAC	2 cut(s)	317, 652
DdeI	CTNAG	4 cut(s)	25, 320, 479, 705
DpnI	GATC	4 cut(s)	135, 195, 473, 683
DpnII	GATC	4 cut(s)	133, 193, 471, 681
Eam1104I	CTCTTC	2 cut(s)	152, 535
EarI	CTCTTC	2 cut(s)	152, 535
Eco47I	GGWCC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	708
FaeI	CATG	1 cut(s)	745
FaiI	YATR	8 cut(s)	11, 297, 502, 504, 608, 644, 743, 775
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	1 cut(s)	741
FauNDI	CATATG	1 cut(s)	502
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	2 cut(s)	112, 737
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	3 cut(s)	108, 180, 347
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	1 cut(s)	595
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	703
HapII	CCGG	5 cut(s)	331, 351, 456, 635, 722
HhaI	GCGC	1 cut(s)	721
Hin1II	CATG	1 cut(s)	745
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	3 cut(s)	21, 268, 732
HpaII	CCGG	5 cut(s)	331, 351, 456, 635, 722
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	412, 756
Hpy188III	TCNNGA	7 cut(s)	165, 215, 230, 448, 461, 524, 742
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	163, 683
HpyCH4III	ACNGT	2 cut(s)	15, 251
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	6 cut(s)	174, 276, 375, 500, 616, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpyF3I	CTNAG	4 cut(s)	25, 320, 479, 705
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	1 cut(s)	745
HspAI	GCGC	1 cut(s)	719
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	133, 193, 471, 681
LmnI	GCTCC	3 cut(s)	588, 638, 692
Lsp1109I	GCAGC	1 cut(s)	288
MaeI	CTAG	3 cut(s)	108, 180, 347
MaeII	ACGT	1 cut(s)	513
MalI	GATC	4 cut(s)	135, 195, 473, 683
MboI	GATC	4 cut(s)	133, 193, 471, 681
MboII	GAAGA	6 cut(s)	114, 139, 277, 452, 481, 552
MflI	RGATCY	1 cut(s)	681
MluCI	AATT	3 cut(s)	219, 530, 546
MlyI	GAGTC	1 cut(s)	262
MseI	TTAA	2 cut(s)	63, 678
MspI	CCGG	5 cut(s)	331, 351, 456, 635, 722
MspR9I	CCNGG	2 cut(s)	352, 636
Mva1269I	GAATGC	1 cut(s)	348
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	1 cut(s)	597
NciI	CCSGG	2 cut(s)	352, 636
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	4 cut(s)	133, 193, 471, 681
NheI	GCTAGC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	745
NmeAIII	GCCGAG	1 cut(s)	289
PagI	TCATGA	1 cut(s)	741
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	21, 732
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp1406I	AACGTT	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	681
RsaI	GTAC	2 cut(s)	318, 653
RsaNI	GTAC	2 cut(s)	317, 652
SaqAI	TTAA	2 cut(s)	63, 678
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	4 cut(s)	133, 193, 471, 681
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	352, 636
SinI	GGWCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	3 cut(s)	219, 530, 546
SsiI	CCGC	2 cut(s)	4, 717
SspMI	CTAG	3 cut(s)	108, 180, 347
StyD4I	CCNGG	2 cut(s)	350, 634
TaaI	ACNGT	2 cut(s)	15, 251
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	1 cut(s)	229
TasI	AATT	3 cut(s)	219, 530, 546
TatI	WGTACW	2 cut(s)	316, 651
TfiI	GAWTC	2 cut(s)	21, 732
Tru1I	TTAA	2 cut(s)	63, 678
Tru9I	TTAA	2 cut(s)	63, 678
TscAI	CASTG	2 cut(s)	33, 136
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	4 cut(s)	114, 432, 730, 761
TspRI	CASTG	2 cut(s)	33, 136
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	1 cut(s)	530
XspI	CTAG	3 cut(s)	108, 180, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.