Rh1AG315100

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009315
Physical Location & Seq
Reverse (-)
54787591 .. 54790456
2866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG315100.1

Sequence Viewer

Length: 843 bp
ATGCGGACCGTACCGTTGGGAATCTCAGTGTCCCCAACCTCCATTAACACCACTCTCAACCTTAAACGACCAAACAACTTCCCTCTATCCACTTCCACTTCTAGGGTTTCTGCATCCTCCACTGACAATTTCTCTCTCCTCTCCTTCTCAAAATCTGGAGTCTGCAGAGCCAGTCAAGTGGCTGATCTATTTCCAACTGTGTCTCCTGAAATTGTTGTTCGGGAGGCGAGGTTAGAGGACTGTTGGGAGGTTGCCGAGACTCATTGCAGCTCTTTCTTCCCCGAATATGCTTTCCCTTTGGATTTTGTTCTTAGGGTTGACCGGCTGGTGGGAATGCTAGCCGGGTTTTCTTTGCCAAGTGGTTGCAAAAGGACTTGTCTGGTAGCGGTCATTGGAAACCCTGCTGATGAAACTTTCCTCTTCGGAAGTGAAGATTTCAAGATTGCCGGTCTTGATGGGAAGATCAGTCTCAGTAAGAGGTATGTGGCTGGAATATTGACAGTGGATACTGTAGCTGATTTTCTTCCTAGAAAAGGTCCTCTCCGGCAGAGAAGGACTGGTATTGCATATGTATCAAACGTTGCTGTTCGGGAGAAATTTCGACGTAGAGGAATTGGTAAAAGGCTAATAGCAAAAGCAGAAGCTCAAGCGAGGAGCTGGGATTGTCGTGCCATTGCATTGCATTGTGATTTGAACAATCCGGGAGCCATAAAGCTGTACAAAGGTCAGGGTTTCAGATCTATTAAGGTGCCTGAAGGAGCAACTTGGCCTCAGCCCAAGACTGCGCCCGATGTTAGATTCAACTTCATGATGAAGCTTCTGAACAACACTACTGCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

280

Amino Acids

30.76

Weight (kDa)

9.76

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 180 - 245 3.7e-16 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 186 - 246 3.6e-10 Acetyltransferase (GNAT) domain
Acetyltransf_10 PF13673 187 - 249 1.1e-06 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39000 AT2G39000 AT2G39000 AT2G39000
fragaria_vesca FvH4_7g19440 FvH4_7g19440 FvH4_7g19440
malus_domestica MD01G1108300.v1.1 MD07G1174400.v1.1
prunus_persica Prupe.2G213200_v2.0.a1
pyrus_communis pycom01g13520 pycom07g16860
rosa_chinensis RchiOBHm_Chr1g0363321
rosa_laevigata RLG00000027574
rosa_multiflora Rmu_sc0011095.1_g000002
rosa_roxburghii Rroxscaffold_4G00293280
rosa_rugosa Rorug01G0306300
rosa_samantha Rh1AG315100 Rh1BG278300 Rh1CG294800 Rh1DG309400
rosa_wichuraiana Rw1G027920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 748
AciI CCGC 2 cut(s) 4, 386
AclI AACGTT 1 cut(s) 579
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 2 cut(s) 12, 719
AfiI CCNNNNNNNGG 3 cut(s) 102, 328, 533
AgsI TTSAA 3 cut(s) 439, 694, 802
AluBI AGCT 6 cut(s) 270, 515, 644, 657, 715, 817
AluI AGCT 6 cut(s) 270, 515, 644, 657, 715, 817
Alw26I GTCTC 3 cut(s) 207, 251, 473
AoxI GGCC 1 cut(s) 767
ApeKI GCWGC 1 cut(s) 267
ApoI RAATTY 1 cut(s) 596
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 2 cut(s) 6, 536
AsuC2I CCSGG 2 cut(s) 343, 702
AsuNHI GCTAGC 1 cut(s) 337
AvaII GGWCC 2 cut(s) 6, 536
BanI GGYRCC 1 cut(s) 748
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 449
BciVI GTATCC 1 cut(s) 499
BcnI CCSGG 2 cut(s) 343, 702
BcoDI GTCTC 3 cut(s) 207, 251, 473
BfaI CTAG 3 cut(s) 102, 338, 528
BfmI CTRYAG 2 cut(s) 163, 510
BfuI GTATCC 1 cut(s) 499
BglII AGATCT 1 cut(s) 737
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 2 cut(s) 343, 702
Bme18I GGWCC 2 cut(s) 6, 536
BmgT120I GGNCC 2 cut(s) 6, 536
BmiI GGNNCC 2 cut(s) 706, 750
BmrFI CCNGG 2 cut(s) 343, 702
BmsI GCATC 1 cut(s) 122
BmtI GCTAGC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 630
BpuMI CCSGG 2 cut(s) 343, 702
BsaXI ACNNNNNCTCC 4 cut(s) 187, 215, 217, 245
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 328, 533
Bse118I RCCGGY 2 cut(s) 321, 446
Bse1I ACTGG 2 cut(s) 171, 562
Bse3DI GCAATG 3 cut(s) 262, 672, 677
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 3 cut(s) 102, 328, 533
BseMI GCAATG 3 cut(s) 262, 672, 677
BseMII CTCAG 3 cut(s) 39, 484, 785
BseNI ACTGG 2 cut(s) 171, 562
BseRI GAGGAG 2 cut(s) 128, 667
BseXI GCAGC 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 657
BshFI GGCC 1 cut(s) 769
BshNI GGYRCC 1 cut(s) 748
BsiSI CCGG 5 cut(s) 322, 342, 447, 544, 701
BslFI GGGAC 1 cut(s) 16
BslI CCNNNNNNNGG 3 cut(s) 102, 328, 533
BsmAI GTCTC 3 cut(s) 207, 251, 473
BsmFI GGGAC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 1 cut(s) 769
Bsp1407I TGTACA 1 cut(s) 717
Bsp143I GATC 3 cut(s) 184, 462, 737
BspACI CCGC 2 cut(s) 4, 386
BspANI GGCC 1 cut(s) 769
BspCNI CTCAG 3 cut(s) 38, 483, 784
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 2 cut(s) 706, 750
BspMAI CTGCAG 1 cut(s) 167
BspOI GCTAGC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 748
BsrDI GCAATG 3 cut(s) 262, 672, 677
BsrFI RCCGGY 2 cut(s) 321, 446
BsrGI TGTACA 1 cut(s) 717
BsrI ACTGG 2 cut(s) 171, 562
BssAI RCCGGY 2 cut(s) 321, 446
BssMI GATC 3 cut(s) 184, 462, 737
Bst4CI ACNGT 6 cut(s) 10, 15, 199, 242, 502, 511
Bst6I CTCTTC 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 717
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 5 cut(s) 25, 311, 470, 771, 840
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 3 cut(s) 187, 465, 740
BstMAI GTCTC 3 cut(s) 207, 251, 473
BstMBI GATC 3 cut(s) 184, 462, 737
BstSCI CCNGG 2 cut(s) 341, 700
BstSFI CTRYAG 2 cut(s) 163, 510
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 737
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 737
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 1 cut(s) 769
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 3 cut(s) 33, 120, 507
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 1 cut(s) 807
CfoI GCGC 1 cut(s) 787
Cfr10I RCCGGY 2 cut(s) 321, 446
Cfr13I GGNCC 2 cut(s) 6, 536
CpoI CGGWCCG 1 cut(s) 6
Csp6I GTAC 2 cut(s) 11, 718
CspI CGGWCCG 1 cut(s) 6
CviAII CATG 1 cut(s) 808
CviQI GTAC 2 cut(s) 11, 718
DdeI CTNAG 5 cut(s) 25, 311, 470, 771, 840
DpnI GATC 3 cut(s) 186, 464, 739
DpnII GATC 3 cut(s) 184, 462, 737
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco47I GGWCC 2 cut(s) 6, 536
Eco57I CTGAAG 1 cut(s) 774
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 536
FaeI CATG 1 cut(s) 811
FaiI YATR 6 cut(s) 288, 483, 568, 570, 710, 809
FaqI GGGAC 1 cut(s) 16
FatI CATG 1 cut(s) 807
FauNDI CATATG 1 cut(s) 568
Fnu4HI GCNGC 1 cut(s) 268
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 3 cut(s) 102, 338, 528
GlaI GCGC 1 cut(s) 786
GluI GCNGC 1 cut(s) 268
GsaI CCCAGC 1 cut(s) 661
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 769
HapII CCGG 5 cut(s) 322, 342, 447, 544, 701
HhaI GCGC 1 cut(s) 787
Hin1II CATG 1 cut(s) 811
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 4 cut(s) 21, 159, 259, 798
HpaII CCGG 5 cut(s) 322, 342, 447, 544, 701
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 425, 737, 822
Hpy188III TCNNGA 7 cut(s) 156, 206, 221, 439, 452, 590, 808
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 606
HpyAV CCTTC 3 cut(s) 154, 546, 749
HpyCH4III ACNGT 6 cut(s) 10, 15, 199, 242, 502, 511
HpyCH4IV ACGT 2 cut(s) 579, 604
HpyCH4V TGCA 8 cut(s) 113, 165, 267, 366, 566, 677, 682, 836
HpyF3I CTNAG 5 cut(s) 25, 311, 470, 771, 840
HpySE526I ACGT 2 cut(s) 579, 604
Hsp92II CATG 1 cut(s) 811
HspAI GCGC 1 cut(s) 785
Kzo9I GATC 3 cut(s) 184, 462, 737
LmnI GCTCC 3 cut(s) 654, 704, 758
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 122
MaeI CTAG 3 cut(s) 102, 338, 528
MaeII ACGT 2 cut(s) 579, 604
MalI GATC 3 cut(s) 186, 464, 739
MboI GATC 3 cut(s) 184, 462, 737
MboII GAAGA 5 cut(s) 268, 412, 443, 472, 515
MflI RGATCY 1 cut(s) 737
MluCI AATT 4 cut(s) 127, 210, 596, 612
MlyI GAGTC 2 cut(s) 168, 253
MmeI TCCRAC 1 cut(s) 218
MseI TTAA 3 cut(s) 45, 63, 744
MspI CCGG 5 cut(s) 322, 342, 447, 544, 701
MspR9I CCNGG 2 cut(s) 343, 702
Mva1269I GAATGC 1 cut(s) 339
NciI CCSGG 2 cut(s) 343, 702
NdeI CATATG 1 cut(s) 568
NdeII GATC 3 cut(s) 184, 462, 737
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 1 cut(s) 811
NlaIV GGNNCC 2 cut(s) 706, 750
NmeAIII GCCGAG 1 cut(s) 280
PagI TCATGA 1 cut(s) 807
PctI GAATGC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 21, 798
PfoI TCCNGGA 1 cut(s) 700
PkrI GCNGC 1 cut(s) 269
PleI GAGTC 2 cut(s) 167, 253
PpsI GAGTC 2 cut(s) 167, 253
PpuMI RGGWCCY 1 cut(s) 536
Psp1406I AACGTT 1 cut(s) 579
Psp5II RGGWCCY 1 cut(s) 536
PspFI CCCAGC 1 cut(s) 657
PspN4I GGNNCC 2 cut(s) 706, 750
PspPI GGNCC 2 cut(s) 6, 536
PspPPI RGGWCCY 1 cut(s) 536
PstI CTGCAG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 737
RsaI GTAC 2 cut(s) 12, 719
RsaNI GTAC 2 cut(s) 11, 718
Rsr2I CGGWCCG 1 cut(s) 6
RsrII CGGWCCG 1 cut(s) 6
SaqAI TTAA 3 cut(s) 45, 63, 744
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 3 cut(s) 184, 462, 737
Sau96I GGNCC 2 cut(s) 6, 536
SchI GAGTC 2 cut(s) 168, 253
ScrFI CCNGG 2 cut(s) 343, 702
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 2 cut(s) 163, 510
SinI GGWCC 2 cut(s) 6, 536
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
Sse9I AATT 4 cut(s) 127, 210, 596, 612
SsiI CCGC 2 cut(s) 4, 386
SspI AATATT 1 cut(s) 495
SspMI CTAG 3 cut(s) 102, 338, 528
StyD4I CCNGG 2 cut(s) 341, 700
TaaI ACNGT 6 cut(s) 10, 15, 199, 242, 502, 511
TaiI ACGT 2 cut(s) 582, 607
TaqI TCGA 1 cut(s) 601
TasI AATT 4 cut(s) 127, 210, 596, 612
TatI WGTACW 1 cut(s) 717
TfiI GAWTC 2 cut(s) 21, 798
Tru1I TTAA 3 cut(s) 45, 63, 744
Tru9I TTAA 3 cut(s) 45, 63, 744
TscAI CASTG 3 cut(s) 33, 127, 507
TseI GCWGC 1 cut(s) 267
TspDTI ATGAA 3 cut(s) 423, 796, 827
TspRI CASTG 3 cut(s) 33, 127, 507
VpaK11BI GGWCC 2 cut(s) 6, 536
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 1 cut(s) 596
XspI CTAG 3 cut(s) 102, 338, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.