AT2G39110

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014957
Physical Location & Seq
Forward (+)
16319447 .. 16321685
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39110.2

Sequence Viewer

Length: 1308 bp
ATGAATAATTCTACATCAGTGAAGAGGCTGGTTTCATCTAAGGCAATGAAATGTTTCTACTTCAGCAAAGACAAAACTCAGGATGATGAAGCTAAGACTAGAAAGTTTGGTTCAGCTACGATGGCTAGAGGAGGATCAGGGTCTGAGTTTAATTCAGATACAAGTACTGCTACTTCCATTACTTCTTCCTTGCACGTCCTCTCAGAGACACACAGTAATAATCTCAAAGTATTTGTCCTCGATGACCTTAAAACCGCTACCAAGAACTTCAGCCGCTCCTTGATGATCGGTGAAGGTGGCTTTGGTGGTGTCTTTCGTGGCGTGATTCAGAACCCTCAAGATTCTCGTAAAAAGATTGATATTGCAGTTAAACAACTTAGTAGAAGAGGTCTACAGGGGCATAAAGAATGGGTGACAGAGGTAAATGTATTGGGAGTAGTGGAGCATCCGAATCTGGTGAAGCTGATCGGTTATTGCGCTGAGGATGATGAGAGAGGGATCCAACGGCTACTTGTTTACGAATACGTACAAAACAGAAGTGTTCAAGACCATTTATCCAATCGTTTTATAGTCACTCCTCTTCCTTGGTCCACCAGACTGAAGATTGCTCAAGACACTGCTAGAGGACTCGCTTATCTTCATCAAGGCATGGAGTTTCAGATCATCTTTAGGGATTTCAAATCCTCTAATATCCTTCTTGATGAGAACTGGAATGCAAAACTCTCGGATTTCGGACTGGCTCGAATGGGTCCTTCAGATGGAATCACTCACGTTTCCACCGCGGTTGTAGGGACCATTGGTTATGCAGCACCGGAATACATCCAAACAGGACACCTCACGGCTAAGAGCGACGTGTGGAGCTACGGAATCTTTTTATATGAACTCATCACAGGAAGACGACCTTTTGACCGTAACCGCCCAAGAAACGAGCAGAACATCTTGGAGTGGATCAGACCACACTTATCCGACATAAAGAAGTTCAAAATGATCATCGACCCAAGACTTGAAGGAAACTACTACCTCAAGTCAGCATTAAAGCTAGCTGCAGTTGCTAACCGGTGTTTGATGGTAAAAGCGAAAGCAAGGCCAACAATGAGTCAGGTTTCAGAGATGTTAGAAAGGATAGTGGAAACATCATCAGATGGTGCTCCTTCAGGACTGCCATTGATGAAAAGCTTGACACCTAAAGATGCATTCGAAGCCTCAAGAAGGGAGAGAGTTAAGAGAAGATTTGTTGAACTGTTAATTGGAGAAAATGGTTGTCCCAATTTACCTACTTGGTCTCATAAACTTGTTACTTCTATTTGA

Protein Analysis

435

Amino Acids

48.88

Weight (kDa)

9.55

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 80 - 354 3.3e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 80 - 357 5.2e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39110 AT2G39110
fragaria_vesca FvH4_7g18950
malus_domestica MD01G1105200.v1.1
prunus_persica Prupe.2G210500_v2.0.a1 Prupe.2G210500_v2.0.a1
pyrus_communis pycom01g13170 pycom07g16590
rosa_chinensis RchiOBHm_Chr1g0362881
rosa_laevigata RLG00000027615
rosa_multiflora Rmu_sc0001502.1_g000012
rosa_roxburghii Rroxscaffold_4G00293680
rosa_rugosa Rorug01G0302100 Rorug01G0302100
rosa_samantha Rh1BG274200
rosa_wichuraiana Rw1G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 276
AccI GTMKAC 1 cut(s) 391
AccII CGCG 1 cut(s) 782
AciI CCGC 5 cut(s) 255, 274, 780, 782, 916
AclWI GGATC 4 cut(s) 142, 493, 506, 956
AcuI CTGAAG 5 cut(s) 46, 253, 620, 738, 1137
AfaI GTAC 2 cut(s) 166, 528
AfiI CCNNNNNNNGG 2 cut(s) 758, 1209
AflIII ACRYGT 1 cut(s) 852
AgeI ACCGGT 1 cut(s) 1056
AgsI TTSAA 5 cut(s) 545, 679, 982, 1007, 1238
AjiI CACGTC 2 cut(s) 196, 853
AjuI GAANNNNNNNTTGG 4 cut(s) 285, 317, 1230, 1262
AluBI AGCT 7 cut(s) 92, 116, 463, 861, 1039, 1043, 1176
AluI AGCT 7 cut(s) 92, 116, 463, 861, 1039, 1043, 1176
Alw21I GWGCWC 1 cut(s) 1150
Alw26I GTCTC 2 cut(s) 200, 1287
AlwI GGATC 4 cut(s) 142, 493, 506, 956
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 1 cut(s) 1085
ApeKI GCWGC 2 cut(s) 806, 1043
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AsiGI ACCGGT 1 cut(s) 1056
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 588, 749, 792
AsuHPI GGTGA 3 cut(s) 302, 424, 469
AsuII TTCGAA 1 cut(s) 1197
AsuNHI GCTAGC 1 cut(s) 1039
AvaII GGWCC 3 cut(s) 588, 749, 792
BamHI GGATCC 1 cut(s) 498
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BbsI GAAGAC 1 cut(s) 901
Bbv12I GWGCWC 1 cut(s) 1150
BbvCI CCTCAGC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 818, 1030
BccI CCATC 4 cut(s) 115, 752, 1060, 1136
BceAI ACGGC 2 cut(s) 521, 855
BcgI CGANNNNNNTGC 2 cut(s) 705, 739
BclI TGATCA 1 cut(s) 987
BcoDI GTCTC 2 cut(s) 200, 1287
BfaI CTAG 4 cut(s) 99, 126, 621, 1040
BfmI CTRYAG 2 cut(s) 392, 1044
BisI GCNGC 3 cut(s) 274, 807, 1044
BlsI GCNGC 3 cut(s) 275, 808, 1045
BmcAI AGTACT 1 cut(s) 166
Bme18I GGWCC 3 cut(s) 588, 749, 792
BmgBI CACGTC 2 cut(s) 196, 853
BmgT120I GGNCC 3 cut(s) 588, 749, 792
BmiI GGNNCC 3 cut(s) 500, 750, 793
BmsI GCATC 2 cut(s) 454, 1180
BmtI GCTAGC 1 cut(s) 1043
BpiI GAAGAC 1 cut(s) 901
Bpu10I CCTNAGC 1 cut(s) 480
Bpu14I TTCGAA 1 cut(s) 1197
BpuEI CTTGAG 4 cut(s) 321, 594, 1007, 1189
BsaAI YACGTR 1 cut(s) 526
BsaI GGTCTC 1 cut(s) 1287
BsaJI CCNNGG 2 cut(s) 584, 780
BsaWI WCCGGW 2 cut(s) 811, 1056
Bsc4I CCNNNNNNNGG 2 cut(s) 758, 1209
Bse118I RCCGGY 1 cut(s) 1056
Bse1I ACTGG 2 cut(s) 713, 741
Bse3DI GCAATG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 584, 780
BseGI GGATG 4 cut(s) 88, 445, 490, 819
BseLI CCNNNNNNNGG 2 cut(s) 758, 1209
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 4 cut(s) 92, 135, 216, 471
BseNI ACTGG 2 cut(s) 713, 741
BseRI GAGGAG 2 cut(s) 144, 567
BseXI GCAGC 2 cut(s) 818, 1030
Bsh1236I CGCG 1 cut(s) 782
BshFI GGCC 1 cut(s) 1087
BshTI ACCGGT 1 cut(s) 1056
BsiHKAI GWGCWC 1 cut(s) 1150
BsiSI CCGG 2 cut(s) 812, 1057
BslFI GGGAC 2 cut(s) 805, 1248
BslI CCNNNNNNNGG 2 cut(s) 758, 1209
BsmAI GTCTC 2 cut(s) 200, 1287
BsmFI GGGAC 2 cut(s) 805, 1248
BsmI GAATGC 2 cut(s) 718, 1193
BsnI GGCC 1 cut(s) 1087
Bso31I GGTCTC 1 cut(s) 1287
Bsp119I TTCGAA 1 cut(s) 1197
Bsp1286I GDGCHC 1 cut(s) 1150
Bsp143I GATC 7 cut(s) 134, 285, 465, 498, 660, 948, 987
BspACI CCGC 5 cut(s) 255, 274, 780, 782, 916
BspANI GGCC 1 cut(s) 1087
BspCNI CTCAG 4 cut(s) 91, 136, 215, 472
BspFNI CGCG 1 cut(s) 782
BspLI GGNNCC 3 cut(s) 500, 750, 793
BspMAI CTGCAG 1 cut(s) 1048
BspOI GCTAGC 1 cut(s) 1043
BspPI GGATC 4 cut(s) 142, 493, 506, 956
BspT104I TTCGAA 1 cut(s) 1197
BspTNI GGTCTC 1 cut(s) 1287
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 1056
BsrI ACTGG 2 cut(s) 713, 741
BssAI RCCGGY 1 cut(s) 1056
BssECI CCNNGG 2 cut(s) 584, 780
BssMI GATC 7 cut(s) 134, 285, 465, 498, 660, 948, 987
BssT1I CCWWGG 1 cut(s) 584
Bst4CI ACNGT 3 cut(s) 215, 911, 1242
Bst6I CTCTTC 3 cut(s) 17, 379, 585
BstBAI YACGTR 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 1197
BstC8I GCNNGC 1 cut(s) 1041
BstDEI CTNAG 8 cut(s) 39, 78, 93, 144, 202, 377, 480, 843
BstDSI CCRYGG 1 cut(s) 780
BstENI CCTNNNNNAGG 1 cut(s) 1207
BstF5I GGATG 4 cut(s) 88, 445, 490, 819
BstFNI CGCG 1 cut(s) 782
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 7 cut(s) 137, 288, 468, 501, 663, 951, 990
BstMAI GTCTC 2 cut(s) 200, 1287
BstMBI GATC 7 cut(s) 134, 285, 465, 498, 660, 948, 987
BstMWI GCNNNNNNNGC 3 cut(s) 122, 1049, 1199
BstSFI CTRYAG 2 cut(s) 392, 1044
BstSNI TACGTA 1 cut(s) 526
BstUI CGCG 1 cut(s) 782
BstV1I GCAGC 2 cut(s) 818, 1030
BstV2I GAAGAC 1 cut(s) 901
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
BsuRI GGCC 1 cut(s) 1087
BtgI CCRYGG 1 cut(s) 780
BtrI CACGTC 2 cut(s) 196, 853
BtsCI GGATG 4 cut(s) 88, 445, 490, 819
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 2 cut(s) 24, 615
Cac8I GCNNGC 1 cut(s) 1041
CaiI CAGNNNCTG 1 cut(s) 143
CfoI GCGC 1 cut(s) 479
Cfr10I RCCGGY 1 cut(s) 1056
Cfr13I GGNCC 3 cut(s) 588, 749, 792
Cfr42I CCGCGG 1 cut(s) 783
Csp6I GTAC 2 cut(s) 165, 527
CspAI ACCGGT 1 cut(s) 1056
CspCI CAANNNNNGTGG 2 cut(s) 766, 801
CviAII CATG 1 cut(s) 649
CviQI GTAC 2 cut(s) 165, 527
DdeI CTNAG 8 cut(s) 39, 78, 93, 144, 202, 377, 480, 843
DpnI GATC 7 cut(s) 136, 287, 467, 500, 662, 950, 989
DpnII GATC 7 cut(s) 134, 285, 465, 498, 660, 948, 987
Eam1104I CTCTTC 3 cut(s) 17, 379, 585
EarI CTCTTC 3 cut(s) 17, 379, 585
Eco105I TACGTA 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 584
Eco31I GGTCTC 1 cut(s) 1287
Eco47I GGWCC 3 cut(s) 588, 749, 792
Eco57I CTGAAG 5 cut(s) 46, 253, 620, 738, 1137
EcoNI CCTNNNNNAGG 1 cut(s) 1207
EcoO109I RGGNCCY 1 cut(s) 749
EcoT14I CCWWGG 1 cut(s) 584
EcoT22I ATGCAT 1 cut(s) 1195
ErhI CCWWGG 1 cut(s) 584
FaeI CATG 1 cut(s) 652
FaiI YATR 8 cut(s) 402, 569, 650, 804, 877, 879, 971, 1287
FalI AAGNNNNNCTT 2 cut(s) 886, 918
FaqI GGGAC 2 cut(s) 805, 1248
FatI CATG 1 cut(s) 648
FbaI TGATCA 1 cut(s) 987
FblI GTMKAC 1 cut(s) 391
Fnu4HI GCNGC 3 cut(s) 274, 807, 1044
FokI GGATG 4 cut(s) 95, 432, 497, 806
Fsp4HI GCNGC 3 cut(s) 274, 807, 1044
FspBI CTAG 4 cut(s) 99, 126, 621, 1040
GlaI GCGC 1 cut(s) 478
GluI GCNGC 3 cut(s) 274, 807, 1044
HaeIII GGCC 1 cut(s) 1087
HapII CCGG 2 cut(s) 812, 1057
HhaI GCGC 1 cut(s) 479
Hin1II CATG 1 cut(s) 652
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HindIII AAGCTT 1 cut(s) 1174
HinfI GANTC 7 cut(s) 325, 341, 451, 627, 762, 867, 1096
HpaII CCGG 2 cut(s) 812, 1057
HphI GGTGA 3 cut(s) 302, 424, 469
Hpy166II GTNNAC 3 cut(s) 392, 517, 591
Hpy188III TCNNGA 7 cut(s) 80, 338, 545, 611, 698, 1155, 1206
Hpy8I GTNNAC 3 cut(s) 392, 517, 591
Hpy99I CGWCG 1 cut(s) 854
HpyAV CCTTC 6 cut(s) 287, 704, 762, 1001, 1161, 1203
HpyCH4III ACNGT 3 cut(s) 215, 911, 1242
HpyCH4IV ACGT 4 cut(s) 195, 525, 771, 852
HpyCH4V TGCA 6 cut(s) 193, 365, 716, 806, 1046, 1193
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 1049, 1199
HpyF3I CTNAG 8 cut(s) 39, 78, 93, 144, 202, 377, 480, 843
HpySE526I ACGT 4 cut(s) 195, 525, 771, 852
Hsp92II CATG 1 cut(s) 652
HspAI GCGC 1 cut(s) 477
Ksp22I TGATCA 1 cut(s) 987
KspI CCGCGG 1 cut(s) 783
Kzo9I GATC 7 cut(s) 134, 285, 465, 498, 660, 948, 987
LmnI GCTCC 4 cut(s) 281, 442, 858, 1153
Lsp1109I GCAGC 2 cut(s) 818, 1030
LweI GCATC 2 cut(s) 454, 1180
MaeI CTAG 4 cut(s) 99, 126, 621, 1040
MaeII ACGT 4 cut(s) 195, 525, 771, 852
MaeIII GTNAC 4 cut(s) 412, 571, 911, 1294
MalI GATC 7 cut(s) 136, 287, 467, 500, 662, 950, 989
MbiI CCGCTC 1 cut(s) 276
MboI GATC 7 cut(s) 134, 285, 465, 498, 660, 948, 987
MboII GAAGA 8 cut(s) 34, 177, 396, 572, 613, 629, 906, 1239
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 1150
MluCI AATT 4 cut(s) 7, 151, 1245, 1267
MlyI GAGTC 2 cut(s) 621, 1105
MmeI TCCRAC 2 cut(s) 526, 990
Mph1103I ATGCAT 1 cut(s) 1195
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 6 cut(s) 150, 249, 369, 1034, 1221, 1244
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 2 cut(s) 812, 1057
Mva1269I GAATGC 2 cut(s) 718, 1193
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 3 cut(s) 122, 1049, 1199
NdeII GATC 7 cut(s) 134, 285, 465, 498, 660, 948, 987
NheI GCTAGC 1 cut(s) 1039
NlaIII CATG 1 cut(s) 652
NlaIV GGNNCC 3 cut(s) 500, 750, 793
NmuCI GTSAC 2 cut(s) 412, 571
NsiI ATGCAT 1 cut(s) 1195
NspV TTCGAA 1 cut(s) 1197
PctI GAATGC 2 cut(s) 718, 1193
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 5 cut(s) 325, 341, 451, 762, 867
PinAI ACCGGT 1 cut(s) 1056
PkrI GCNGC 3 cut(s) 275, 808, 1045
PleI GAGTC 2 cut(s) 621, 1104
PpsI GAGTC 2 cut(s) 621, 1104
Ppu21I YACGTR 1 cut(s) 526
PpuMI RGGWCCY 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 749
PspN4I GGNNCC 3 cut(s) 500, 750, 793
PspPI GGNCC 3 cut(s) 588, 749, 792
PspPPI RGGWCCY 1 cut(s) 749
PstI CTGCAG 1 cut(s) 1048
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 2 cut(s) 166, 528
RsaNI GTAC 2 cut(s) 165, 527
SacII CCGCGG 1 cut(s) 783
SaqAI TTAA 6 cut(s) 150, 249, 369, 1034, 1221, 1244
SatI GCNGC 3 cut(s) 274, 807, 1044
Sau3AI GATC 7 cut(s) 134, 285, 465, 498, 660, 948, 987
Sau96I GGNCC 3 cut(s) 588, 749, 792
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 2 cut(s) 621, 1105
SduI GDGCHC 1 cut(s) 1150
SfaNI GCATC 2 cut(s) 454, 1180
SfcI CTRYAG 2 cut(s) 392, 1044
Sfr303I CCGCGG 1 cut(s) 783
SfuI TTCGAA 1 cut(s) 1197
SgrBI CCGCGG 1 cut(s) 783
SinI GGWCC 3 cut(s) 588, 749, 792
SmlI CTYRAG 4 cut(s) 336, 609, 1022, 1204
SmoI CTYRAG 4 cut(s) 336, 609, 1022, 1204
SnaBI TACGTA 1 cut(s) 526
Sse9I AATT 4 cut(s) 7, 151, 1245, 1267
SsiI CCGC 5 cut(s) 255, 274, 780, 782, 916
SspMI CTAG 4 cut(s) 99, 126, 621, 1040
StyI CCWWGG 1 cut(s) 584
TaaI ACNGT 3 cut(s) 215, 911, 1242
TaiI ACGT 4 cut(s) 198, 528, 774, 855
TaqI TCGA 4 cut(s) 240, 742, 993, 1197
TasI AATT 4 cut(s) 7, 151, 1245, 1267
TatI WGTACW 1 cut(s) 164
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 5 cut(s) 325, 341, 451, 762, 867
Tru1I TTAA 6 cut(s) 150, 249, 369, 1034, 1221, 1244
Tru9I TTAA 6 cut(s) 150, 249, 369, 1034, 1221, 1244
TscAI CASTG 2 cut(s) 24, 622
TseFI GTSAC 2 cut(s) 412, 571
TseI GCWGC 2 cut(s) 806, 1043
Tsp45I GTSAC 2 cut(s) 412, 571
TspDTI ATGAA 7 cut(s) 17, 24, 62, 102, 629, 894, 1184
TspGWI ACGGA 1 cut(s) 879
TspRI CASTG 2 cut(s) 24, 622
VpaK11BI GGWCC 3 cut(s) 588, 749, 792
XagI CCTNNNNNAGG 1 cut(s) 1207
XmiI GTMKAC 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 4 cut(s) 99, 126, 621, 1040
ZrmI AGTACT 1 cut(s) 166
Zsp2I ATGCAT 1 cut(s) 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.