pycom01g13170

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014957
Physical Location & Seq
Reverse (-)
13727921 .. 13729987
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13170.3

Sequence Viewer

Length: 1299 bp
ATGAAGTGTTTTTCTAATTTCTACAACAGAGAGAAGGATGATGAACCAAAGTCTCCTAAGTCTATCTCTACTCGTTCAGCTTCCTCGTTCTTTTCACTCGATCGCGACCCAAGAAAATCTAGTTCCGAGTTCAATTCTCAGAATGCCACTGCAGAGCTTAGTACAACATCGTCCGCGAAGTCATTTGCAGCATTGTCTCAGAGACAGAGTAATAATCTCAGAGAATTCACATGCTCGGAGTTAAAAGCGGCAACAAAGAACTTTAGTCTCTCCCTCATGCTTGGAGAGGGTGGTTTCGGCGGGGTGTATAGGGGTCATATCCAGAGCACAGATGATCAACATCAAAGATTAGATGTTGCTGTTAAACAACTGAGTAAAAGGGGATTTCAGGGCCATAAAGAGTGGGTGACTGAGGTTAATGTTTTAGGGGTTGTTTTACATCCAAATCTTGTCAAGCTGTTAGGCTACTGTGCTGAGGATGACGAAAGAGGGATTCAACGGCTCCTGGTATACGAATATATGCCCAACAGAAGTGTGCAAGACCACTTATCTAGCCGATTTCAGATAGCTCTTCCATGGGGCACAAGAATGAAAATAGCCCAGGATACTGCCCGCGGCTTAGCATACCTCCATGAGGGGATGGAATTTCAGATTATCTTTAGGGATTTCAAGTCTTCAAACATACTGTTAGATGAACAATGGAATGCAAAGTTGTCAGACTTCGGTATGGCCAGACTTGGGCCTTCAGATGGATTGAGCCACGTCTCTACCGCGGTTGTTGGAACGGTAGGATATGCAGCTCCTGAGTACATTCAAACTGGGCATCTCACGTCGAAAAGTGATGTGTGGAGTTATGGAATTTTCCTTTTAGAACTCATTACAGGCAGACGACCTGTGGACAGAAACCGACCCAAGAACGAGCAAAAACTCATGGAATGGGTGAGGCCATACCTCTCTTCCGATCCAAAAAAGTTCCAGGTGATTTTGGATCCAAGGCTTGAAGGAAAGTATTCCCTCAAGGCGGCCCAAAAACTAGCAACCGTAGCCAGCCGGTGCTTGGTGCGAGCGCCTAAATCACGCCCCAAAATGAGTGAAGTCTTGGAGATGGTGAACCGAATTATGGAGACGACAGATATGGGAAGCCCGGAACTCCCTTTACACAATGTGGACTCGAAGGAAGATTATTTCGCAGAATCCAAAAGAGAGAGTTTGATGAGGAGGCTTGTGGATCCATTCATCGGAGAGAACTGTTGCTTTAATTGGCTAATAGGGAGACCAAAGATTGTAAATCCTTGTTGA

Protein Analysis

433

Amino Acids

48.93

Weight (kDa)

8.99

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39110 AT2G39110
fragaria_vesca FvH4_7g18950
malus_domestica MD01G1105200.v1.1
prunus_persica Prupe.2G210500_v2.0.a1 Prupe.2G210500_v2.0.a1
pyrus_communis pycom01g13170 pycom07g16590
rosa_chinensis RchiOBHm_Chr1g0362881
rosa_laevigata RLG00000027615
rosa_multiflora Rmu_sc0001502.1_g000012
rosa_roxburghii Rroxscaffold_4G00293680
rosa_rugosa Rorug01G0302100 Rorug01G0302100
rosa_samantha Rh1BG274200
rosa_wichuraiana Rw1G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 510
AccII CGCG 4 cut(s) 105, 176, 615, 773
AciI CCGC 8 cut(s) 174, 248, 300, 613, 615, 771, 773, 1022
AclWI GGATC 5 cut(s) 956, 983, 996, 1223, 1236
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 3 cut(s) 224, 644, 858
AcuI CTGAAG 1 cut(s) 729
AdeI CACNNNGTG 1 cut(s) 1165
AfaI GTAC 2 cut(s) 163, 809
AfiI CCNNNNNNNGG 7 cut(s) 634, 738, 749, 1021, 1057, 1120, 1238
AgsI TTSAA 6 cut(s) 133, 497, 670, 678, 815, 1001
AjiI CACGTC 2 cut(s) 763, 831
AjnI CCWGG 3 cut(s) 504, 600, 975
AluBI AGCT 5 cut(s) 80, 157, 457, 569, 800
AluI AGCT 5 cut(s) 80, 157, 457, 569, 800
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 7 cut(s) 57, 196, 201, 272, 769, 1118, 1267
AlwI GGATC 5 cut(s) 956, 983, 996, 1223, 1236
AlwNI CAGNNNCTG 1 cut(s) 803
AoxI GGCC 5 cut(s) 391, 729, 740, 944, 1023
ApeKI GCWGC 2 cut(s) 188, 797
ApoI RAATTY 3 cut(s) 224, 644, 858
Asp700I GAANNNNTTC 1 cut(s) 1009
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 3 cut(s) 391, 740, 1024
AsuC2I CCSGG 1 cut(s) 1145
AsuHPI GGTGA 4 cut(s) 418, 952, 991, 1120
BaeGI GKGCMC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 731
BamHI GGATCC 2 cut(s) 988, 1228
BbsI GAAGAC 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 329
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 200, 809
BccI CCATC 3 cut(s) 634, 743, 1099
BceAI ACGGC 1 cut(s) 515
BciT130I CCWGG 3 cut(s) 506, 602, 977
BciVI GTATCC 1 cut(s) 598
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 1145
BcoDI GTCTC 7 cut(s) 57, 196, 201, 272, 769, 1118, 1267
BfaI CTAG 3 cut(s) 120, 552, 1034
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 1070
BfuI GTATCC 1 cut(s) 598
BisI GCNGC 5 cut(s) 189, 249, 616, 798, 1023
BlpI GCTNAGC 1 cut(s) 619
BlsI GCNGC 5 cut(s) 190, 250, 617, 799, 1024
Bme1390I CCNGG 4 cut(s) 506, 602, 977, 1145
BmgBI CACGTC 2 cut(s) 763, 831
BmgT120I GGNCC 3 cut(s) 391, 740, 1024
BmiI GGNNCC 3 cut(s) 503, 990, 1230
BmrFI CCNGG 4 cut(s) 506, 602, 977, 1145
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 1 cut(s) 832
BmuI ACTGGG 1 cut(s) 828
BpiI GAAGAC 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 474
Bpu1102I GCTNAGC 1 cut(s) 619
BpuEI CTTGAG 1 cut(s) 1001
BpuMI CCSGG 1 cut(s) 1145
BsaBI GATNNNNATC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 1267
BsaJI CCNNGG 5 cut(s) 575, 600, 613, 771, 992
Bsc4I CCNNNNNNNGG 7 cut(s) 634, 738, 749, 1021, 1057, 1120, 1238
Bse118I RCCGGY 1 cut(s) 1050
Bse1I ACTGG 1 cut(s) 823
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 3 cut(s) 506, 602, 977
BseDI CCNNGG 5 cut(s) 575, 600, 613, 771, 992
BseGI GGATG 4 cut(s) 43, 439, 484, 645
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 7 cut(s) 634, 738, 749, 1021, 1057, 1120, 1238
BseMII CTCAG 7 cut(s) 152, 212, 232, 362, 402, 465, 795
BseNI ACTGG 1 cut(s) 823
BseRI GAGGAG 1 cut(s) 1231
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 2 cut(s) 200, 809
Bsh1236I CGCG 4 cut(s) 105, 176, 615, 773
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 5 cut(s) 393, 731, 742, 946, 1025
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 1051, 1145
BslI CCNNNNNNNGG 7 cut(s) 634, 738, 749, 1021, 1057, 1120, 1238
BsmAI GTCTC 7 cut(s) 57, 196, 201, 272, 769, 1118, 1267
BsmBI CGTCTC 2 cut(s) 769, 1118
BsmI GAATGC 2 cut(s) 148, 709
BsnI GGCC 5 cut(s) 393, 731, 742, 946, 1025
Bso31I GGTCTC 1 cut(s) 1267
Bsp1286I GDGCHC 2 cut(s) 329, 584
Bsp143I GATC 5 cut(s) 100, 334, 961, 988, 1228
Bsp1720I GCTNAGC 1 cut(s) 619
Bsp19I CCATGG 1 cut(s) 575
Bsp68I TCGCGA 1 cut(s) 105
BspACI CCGC 8 cut(s) 174, 248, 300, 613, 615, 771, 773, 1022
BspANI GGCC 5 cut(s) 393, 731, 742, 946, 1025
BspCNI CTCAG 7 cut(s) 151, 211, 231, 363, 403, 466, 796
BspFNI CGCG 4 cut(s) 105, 176, 615, 773
BspLI GGNNCC 3 cut(s) 503, 990, 1230
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 5 cut(s) 956, 983, 996, 1223, 1236
BspQI GCTCTTC 1 cut(s) 576
BspTNI GGTCTC 1 cut(s) 1267
BsrFI RCCGGY 1 cut(s) 1050
BsrI ACTGG 1 cut(s) 823
BssAI RCCGGY 1 cut(s) 1050
BssECI CCNNGG 5 cut(s) 575, 600, 613, 771, 992
BssMI GATC 5 cut(s) 100, 334, 961, 988, 1228
BssNAI GTATAC 1 cut(s) 511
BssT1I CCWWGG 2 cut(s) 575, 992
Bst1107I GTATAC 1 cut(s) 511
Bst2UI CCWGG 3 cut(s) 506, 602, 977
Bst4CI ACNGT 5 cut(s) 470, 687, 787, 1042, 1250
Bst6I CTCTTC 2 cut(s) 576, 961
BstC8I GCNNGC 3 cut(s) 613, 1048, 1065
BstDSI CCRYGG 3 cut(s) 575, 613, 771
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 4 cut(s) 43, 439, 484, 645
BstFNI CGCG 4 cut(s) 105, 176, 615, 773
BstH2I RGCGCY 1 cut(s) 1070
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 5 cut(s) 103, 337, 964, 991, 1231
BstMAI GTCTC 7 cut(s) 57, 196, 201, 272, 769, 1118, 1267
BstMBI GATC 5 cut(s) 100, 334, 961, 988, 1228
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 1043
BstNI CCWGG 3 cut(s) 506, 602, 977
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 4 cut(s) 504, 600, 975, 1143
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 584
BstUI CGCG 4 cut(s) 105, 176, 615, 773
BstV1I GCAGC 2 cut(s) 200, 809
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 2 cut(s) 988, 1228
BstYI RGATCY 2 cut(s) 988, 1228
BstZ17I GTATAC 1 cut(s) 511
BsuI GTATCC 1 cut(s) 598
BsuRI GGCC 5 cut(s) 393, 731, 742, 946, 1025
BtgI CCRYGG 3 cut(s) 575, 613, 771
BtrI CACGTC 2 cut(s) 763, 831
BtsCI GGATG 4 cut(s) 43, 439, 484, 645
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
BtuMI TCGCGA 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 613, 1048, 1065
CaiI CAGNNNCTG 1 cut(s) 803
CfoI GCGC 1 cut(s) 1069
Cfr10I RCCGGY 1 cut(s) 1050
Cfr13I GGNCC 3 cut(s) 391, 740, 1024
Cfr42I CCGCGG 2 cut(s) 616, 774
Csp6I GTAC 2 cut(s) 162, 808
CviAII CATG 5 cut(s) 231, 277, 576, 632, 931
CviQI GTAC 2 cut(s) 162, 808
DpnI GATC 5 cut(s) 102, 336, 963, 990, 1230
DpnII GATC 5 cut(s) 100, 334, 961, 988, 1228
DraIII CACNNNGTG 1 cut(s) 1165
EaeI YGGCCR 1 cut(s) 729
Eam1104I CTCTTC 2 cut(s) 576, 961
EarI CTCTTC 2 cut(s) 576, 961
Eco130I CCWWGG 2 cut(s) 575, 992
Eco31I GGTCTC 1 cut(s) 1267
Eco57I CTGAAG 1 cut(s) 729
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 3 cut(s) 504, 600, 975
EcoT14I CCWWGG 2 cut(s) 575, 992
ErhI CCWWGG 2 cut(s) 575, 992
Esp3I CGTCTC 2 cut(s) 769, 1118
FaeI CATG 5 cut(s) 234, 280, 579, 635, 934
FatI CATG 5 cut(s) 230, 276, 575, 631, 930
FauI CCCGC 2 cut(s) 293, 620
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 5 cut(s) 189, 249, 616, 798, 1023
FokI GGATG 4 cut(s) 50, 426, 491, 652
Fsp4HI GCNGC 5 cut(s) 189, 249, 616, 798, 1023
FspBI CTAG 3 cut(s) 120, 552, 1034
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 5 cut(s) 189, 249, 616, 798, 1023
HaeII RGCGCY 1 cut(s) 1070
HaeIII GGCC 5 cut(s) 393, 731, 742, 946, 1025
HapII CCGG 2 cut(s) 1051, 1145
HhaI GCGC 1 cut(s) 1069
Hin1II CATG 5 cut(s) 234, 280, 579, 635, 934
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HinfI GANTC 3 cut(s) 493, 1169, 1193
HpaII CCGG 2 cut(s) 1051, 1145
HphI GGTGA 4 cut(s) 418, 952, 991, 1120
Hpy166II GTNNAC 4 cut(s) 511, 898, 1111, 1168
Hpy188III TCNNGA 3 cut(s) 104, 322, 803
Hpy8I GTNNAC 4 cut(s) 511, 898, 1111, 1168
Hpy99I CGWCG 1 cut(s) 835
HpyAV CCTTC 4 cut(s) 28, 753, 995, 1168
HpyCH4III ACNGT 5 cut(s) 470, 687, 787, 1042, 1250
HpyCH4IV ACGT 2 cut(s) 762, 830
HpyCH4V TGCA 5 cut(s) 152, 188, 538, 707, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 1043
HpySE526I ACGT 2 cut(s) 762, 830
Hsp92II CATG 5 cut(s) 234, 280, 579, 635, 934
HspAI GCGC 1 cut(s) 1067
Ksp22I TGATCA 1 cut(s) 334
KspI CCGCGG 2 cut(s) 616, 774
Kzo9I GATC 5 cut(s) 100, 334, 961, 988, 1228
LguI GCTCTTC 1 cut(s) 576
LmnI GCTCC 2 cut(s) 507, 805
Lsp1109I GCAGC 2 cut(s) 200, 809
LweI GCATC 1 cut(s) 832
MaeI CTAG 3 cut(s) 120, 552, 1034
MaeII ACGT 2 cut(s) 762, 830
MaeIII GTNAC 1 cut(s) 406
MalI GATC 5 cut(s) 102, 336, 963, 990, 1230
MboI GATC 5 cut(s) 100, 334, 961, 988, 1228
MboII GAAGA 4 cut(s) 563, 666, 948, 1190
MflI RGATCY 2 cut(s) 988, 1228
MhlI GDGCHC 2 cut(s) 329, 584
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 7 cut(s) 16, 133, 224, 644, 858, 1116, 1258
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 1 cut(s) 1163
MmeI TCCRAC 1 cut(s) 760
Mox20I TGGCCA 1 cut(s) 731
MroXI GAANNNNTTC 1 cut(s) 1009
MscI TGGCCA 1 cut(s) 731
MseI TTAA 4 cut(s) 242, 363, 417, 1257
MslI CAYNNNNRTG 1 cut(s) 587
Msp20I TGGCCA 1 cut(s) 731
MspA1I CMGCKG 2 cut(s) 615, 773
MspI CCGG 2 cut(s) 1051, 1145
MspR9I CCNGG 4 cut(s) 506, 602, 977, 1145
Mva1269I GAATGC 2 cut(s) 148, 709
MvaI CCWGG 3 cut(s) 506, 602, 977
MvnI CGCG 4 cut(s) 105, 176, 615, 773
MwoI GCNNNNNNNGC 1 cut(s) 1043
NciI CCSGG 1 cut(s) 1145
NcoI CCATGG 1 cut(s) 575
NdeII GATC 5 cut(s) 100, 334, 961, 988, 1228
NlaIII CATG 5 cut(s) 234, 280, 579, 635, 934
NlaIV GGNNCC 3 cut(s) 503, 990, 1230
NmuCI GTSAC 1 cut(s) 406
NruI TCGCGA 1 cut(s) 105
NspI RCATGY 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 576
PctI GAATGC 2 cut(s) 148, 709
PdmI GAANNNNTTC 1 cut(s) 1009
PfeI GAWTC 2 cut(s) 493, 1193
PkrI GCNGC 5 cut(s) 190, 250, 617, 799, 1024
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 1 cut(s) 1163
PpsI GAGTC 1 cut(s) 1163
Psp6I CCWGG 3 cut(s) 504, 600, 975
PspGI CCWGG 3 cut(s) 504, 600, 975
PspN4I GGNNCC 3 cut(s) 503, 990, 1230
PspPI GGNCC 3 cut(s) 391, 740, 1024
PsrI GAACNNNNNNTAC 2 cut(s) 1140, 1172
PstI CTGCAG 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 2 cut(s) 988, 1228
PvuI CGATCG 1 cut(s) 103
RruI TCGCGA 1 cut(s) 105
RsaI GTAC 2 cut(s) 163, 809
RsaNI GTAC 2 cut(s) 162, 808
RseI CAYNNNNRTG 1 cut(s) 587
SacII CCGCGG 2 cut(s) 616, 774
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 4 cut(s) 242, 363, 417, 1257
SatI GCNGC 5 cut(s) 189, 249, 616, 798, 1023
Sau3AI GATC 5 cut(s) 100, 334, 961, 988, 1228
Sau96I GGNCC 3 cut(s) 391, 740, 1024
SchI GAGTC 1 cut(s) 1163
ScrFI CCNGG 4 cut(s) 506, 602, 977, 1145
SduI GDGCHC 2 cut(s) 329, 584
SfaNI GCATC 1 cut(s) 832
SfcI CTRYAG 1 cut(s) 150
Sfr303I CCGCGG 2 cut(s) 616, 774
SgrBI CCGCGG 2 cut(s) 616, 774
SmiMI CAYNNNNRTG 1 cut(s) 587
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
Sse9I AATT 7 cut(s) 16, 133, 224, 644, 858, 1116, 1258
SsiI CCGC 8 cut(s) 174, 248, 300, 613, 615, 771, 773, 1022
SspMI CTAG 3 cut(s) 120, 552, 1034
StyD4I CCNGG 4 cut(s) 504, 600, 975, 1143
StyI CCWWGG 2 cut(s) 575, 992
TaaI ACNGT 5 cut(s) 470, 687, 787, 1042, 1250
TaiI ACGT 2 cut(s) 765, 833
TaqI TCGA 3 cut(s) 99, 833, 1172
TasI AATT 7 cut(s) 16, 133, 224, 644, 858, 1116, 1258
TatI WGTACW 2 cut(s) 161, 807
TauI GCSGC 3 cut(s) 251, 618, 1025
TfiI GAWTC 2 cut(s) 493, 1193
Tru1I TTAA 4 cut(s) 242, 363, 417, 1257
Tru9I TTAA 4 cut(s) 242, 363, 417, 1257
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 2 cut(s) 188, 797
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 5 cut(s) 17, 57, 605, 708, 1225
TspRI CASTG 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 3 cut(s) 224, 644, 858
XceI RCATGY 1 cut(s) 234
XcmI CCANNNNNNNNNTGG 1 cut(s) 1054
XmiI GTMKAC 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 1009
XspI CTAG 3 cut(s) 120, 552, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.