FvH4_7g18950

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014957
Physical Location & Seq
Reverse (-)
15758332 .. 15761815
3484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18950.t1

Sequence Viewer

Length: 1293 bp
ATGAAGTGTTTTTATTTCAACAGCAAAGAGAAAAATGATGAACCAAAGACTACCAAGTGTCCTTCTGGTCATTCCACTTCCTCTTTCTTTTCGCTTGATCGTGATCCTAGAAGATCAGAGTTTAATTCCCAGGATGTCTCGGAATTTAGCACAACATCCTCTGTCAAGTCATTTGCAGTAATGTCTCAAAGACACAGCAACCTAAGCGAATTCACATGCGCGGAGCTGAAAGCAGCAACAAAGAATTTTAGTCTCTCCCTCATGCTTGGAGAGGGCGGGTTTGGTGGTGTGTATAGGGGTGTCATCAAGAGTGCACAAGATCCACATAAGAAAATAGACATCGCTGTTAAACAACTGAGTAAAAGGGGATTGCAGGGCCATAAAGAATGGGTGACTGAAGTTAATGTTTTAGGGATTGTTGAGCATCAAAATCTTGTCAAATTACTGGGCTACTGTGCTGAGGATGATGAAAGAGGGATCCAGAGGCTCCTGATATATGAATACATGCCCAACAGGAGTGTACAAGATCACTTATCAAGCCGATTTCAGATTGCACTCCCTTGGGTCACAAGGGTCAAAATAGCACAGGATGCTGCTCGCGGATTAGCATACCTCCACGAAGAAATGGAATTTCAGATTATCTTTAGGGATTTTAAGTCTTCGAACATACTTTTGGATGAACATTGGAACGCAAAGTTATCAGACTTTGGATTAGCTAGGCTGGGGCCTTCAGATGGAGTGAGCCACGTCTCTACTGCGGTTGTTGGAACAGTTGGATATGCAGCTCCGGAATATATTCAGACAGGACATCTCACATCGAAAAGTGATGTGTGGAGCTATGGCATTTTCCTTTATGAACTCATCACAGGAAGGCGGCCTGTAGACCGGAACCGCCCCAAGAATGAGCAAAAGCTCTTGGAATGGGTGAGAGCACATATGTCTGCAGATTTAAAGAAGTTTCAGCTTATCATGGATCCAAGGCTTGAAGGGAAGTATTCCCTCAAGGCTGCACAAAAGCTAGCAGCTGTGGCCAACCGGTGCTTGGTGAGACAGCCAAAATCACGTCCTAAAATGAGTGAAGTACTGGAGATGATAAACAGAATTGTGGAGACGACAACAGATATGGGAAGCCCTCAACAACTCCCTTCAGAGAGTGTGGACTACTCCAAAAATGAATTTTTGACAGGATCTAAAAGGGAGATTTTGAGAAGGAAGTTTGTGGATCCACTTATTGGAGAAAAAGGTTGCTTGAATTTGCAAATATGGAGACCCAAGATTGTGAAGACATGTTAA

Protein Analysis

431

Amino Acids

48.81

Weight (kDa)

9.22

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 87 - 364 2.3e-47 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 88 - 363 2.6e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39110 AT2G39110
fragaria_vesca FvH4_7g18950
malus_domestica MD01G1105200.v1.1
prunus_persica Prupe.2G210500_v2.0.a1 Prupe.2G210500_v2.0.a1
pyrus_communis pycom01g13170 pycom07g16590
rosa_chinensis RchiOBHm_Chr1g0362881
rosa_laevigata RLG00000027615
rosa_multiflora Rmu_sc0001502.1_g000012
rosa_roxburghii Rroxscaffold_4G00293680
rosa_rugosa Rorug01G0302100 Rorug01G0302100
rosa_samantha Rh1BG274200
rosa_wichuraiana Rw1G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1232
AccI GTMKAC 1 cut(s) 882
AccII CGCG 2 cut(s) 221, 600
AccIII TCCGGA 1 cut(s) 787
AciI CCGC 6 cut(s) 221, 276, 600, 758, 874, 892
AclWI GGATC 9 cut(s) 98, 314, 472, 485, 968, 981, 1195, 1217, 1230
AcoI YGGCCR 1 cut(s) 1029
AcsI RAATTY 6 cut(s) 143, 209, 244, 629, 1175, 1252
AcuI CTGAAG 3 cut(s) 417, 714, 1131
AfaI GTAC 2 cut(s) 522, 1083
AfiI CCNNNNNNNGG 3 cut(s) 734, 1042, 1232
AflIII ACRYGT 1 cut(s) 1286
AgeI ACCGGT 1 cut(s) 1035
AgsI TTSAA 3 cut(s) 19, 986, 1252
AjiI CACGTC 2 cut(s) 748, 1064
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AluBI AGCT 8 cut(s) 226, 716, 785, 837, 913, 964, 1018, 1025
AluI AGCT 8 cut(s) 226, 716, 785, 837, 913, 964, 1018, 1025
Alw21I GWGCWC 2 cut(s) 316, 934
Alw26I GTCTC 7 cut(s) 142, 189, 257, 754, 1042, 1103, 1261
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 9 cut(s) 98, 314, 472, 485, 968, 981, 1195, 1217, 1230
Aor13HI TCCGGA 1 cut(s) 787
AoxI GGCC 4 cut(s) 376, 725, 875, 1029
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 5 cut(s) 233, 593, 782, 1007, 1022
ApoI RAATTY 6 cut(s) 143, 209, 244, 629, 1175, 1252
AsiGI ACCGGT 1 cut(s) 1035
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 376, 725
AsuHPI GGTGA 3 cut(s) 403, 937, 1057
AsuII TTCGAA 1 cut(s) 662
AsuNHI GCTAGC 1 cut(s) 1018
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 1031
BamHI GGATCC 3 cut(s) 477, 973, 1222
BbsI GAAGAC 2 cut(s) 651, 1289
Bbv12I GWGCWC 2 cut(s) 316, 934
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 5 cut(s) 245, 580, 794, 994, 1034
BccI CCATC 1 cut(s) 728
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 7 cut(s) 142, 189, 257, 754, 1042, 1103, 1261
BfaI CTAG 3 cut(s) 108, 717, 1019
BfmI CTRYAG 2 cut(s) 879, 942
BisI GCNGC 6 cut(s) 234, 594, 783, 875, 1008, 1023
BlsI GCNGC 6 cut(s) 235, 595, 784, 876, 1009, 1024
BmcAI AGTACT 1 cut(s) 1083
Bme1390I CCNGG 1 cut(s) 131
BmgBI CACGTC 2 cut(s) 748, 1064
BmgT120I GGNCC 2 cut(s) 376, 725
BmiI GGNNCC 6 cut(s) 479, 488, 726, 890, 975, 1224
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 2 cut(s) 433, 580
BmtI GCTAGC 1 cut(s) 1022
BmuI ACTGGG 1 cut(s) 455
BpiI GAAGAC 2 cut(s) 651, 1289
BpmI CTGGAG 1 cut(s) 1106
Bpu10I CCTNAGC 2 cut(s) 203, 459
Bpu14I TTCGAA 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 986
BsaBI GATNNNNATC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 1261
BsaJI CCNNGG 3 cut(s) 129, 560, 977
BsaWI WCCGGW 3 cut(s) 787, 885, 1035
Bsc4I CCNNNNNNNGG 3 cut(s) 734, 1042, 1232
Bse118I RCCGGY 1 cut(s) 1035
Bse1I ACTGG 2 cut(s) 450, 1089
Bse8I GATNNNNATC 1 cut(s) 102
BseAI TCCGGA 1 cut(s) 787
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 3 cut(s) 129, 560, 977
BseGI GGATG 5 cut(s) 139, 155, 469, 595, 682
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 734, 1042, 1232
BseMII CTCAG 2 cut(s) 347, 450
BseNI ACTGG 2 cut(s) 450, 1089
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 5 cut(s) 245, 580, 794, 994, 1034
BseYI CCCAGC 1 cut(s) 721
BsgI GTGCAG 1 cut(s) 993
Bsh1236I CGCG 2 cut(s) 221, 600
BshFI GGCC 4 cut(s) 378, 727, 877, 1031
BshTI ACCGGT 1 cut(s) 1035
BsiHKAI GWGCWC 2 cut(s) 316, 934
BsiSI CCGG 3 cut(s) 788, 886, 1036
BslI CCNNNNNNNGG 3 cut(s) 734, 1042, 1232
BsmAI GTCTC 7 cut(s) 142, 189, 257, 754, 1042, 1103, 1261
BsmBI CGTCTC 2 cut(s) 754, 1103
BsnI GGCC 4 cut(s) 378, 727, 877, 1031
Bso31I GGTCTC 1 cut(s) 1261
Bsp119I TTCGAA 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 316, 934
Bsp13I TCCGGA 1 cut(s) 787
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 9 cut(s) 97, 103, 113, 319, 477, 526, 973, 1187, 1222
BspACI CCGC 6 cut(s) 221, 276, 600, 758, 874, 892
BspANI GGCC 4 cut(s) 378, 727, 877, 1031
BspCNI CTCAG 2 cut(s) 348, 451
BspEI TCCGGA 1 cut(s) 787
BspFNI CGCG 2 cut(s) 221, 600
BspLI GGNNCC 6 cut(s) 479, 488, 726, 890, 975, 1224
BspMAI CTGCAG 1 cut(s) 946
BspOI GCTAGC 1 cut(s) 1022
BspPI GGATC 9 cut(s) 98, 314, 472, 485, 968, 981, 1195, 1217, 1230
BspT104I TTCGAA 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 1261
BsrFI RCCGGY 1 cut(s) 1035
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 2 cut(s) 450, 1089
BssAI RCCGGY 1 cut(s) 1035
BssECI CCNNGG 3 cut(s) 129, 560, 977
BssMI GATC 9 cut(s) 97, 103, 113, 319, 477, 526, 973, 1187, 1222
BssT1I CCWWGG 2 cut(s) 560, 977
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 455, 772
BstAPI GCANNNNNTGC 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 520
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 598, 1020
BstDEI CTNAG 3 cut(s) 203, 356, 459
BstF5I GGATG 5 cut(s) 139, 155, 469, 595, 682
BstFNI CGCG 2 cut(s) 221, 600
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 9 cut(s) 100, 106, 116, 322, 480, 529, 976, 1190, 1225
BstMAI GTCTC 7 cut(s) 142, 189, 257, 754, 1042, 1103, 1261
BstMBI GATC 9 cut(s) 97, 103, 113, 319, 477, 526, 973, 1187, 1222
BstMWI GCNNNNNNNGC 3 cut(s) 204, 590, 1028
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 3 cut(s) 219, 508, 1290
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 2 cut(s) 879, 942
BstSLI GKGCMC 1 cut(s) 316
BstUI CGCG 2 cut(s) 221, 600
BstV1I GCAGC 5 cut(s) 245, 580, 794, 994, 1034
BstV2I GAAGAC 2 cut(s) 651, 1289
BstX2I RGATCY 5 cut(s) 319, 477, 973, 1187, 1222
BstYI RGATCY 5 cut(s) 319, 477, 973, 1187, 1222
BsuRI GGCC 4 cut(s) 378, 727, 877, 1031
BtgZI GCGATG 1 cut(s) 325
BtrI CACGTC 2 cut(s) 748, 1064
BtsCI GGATG 5 cut(s) 139, 155, 469, 595, 682
Cac8I GCNNGC 2 cut(s) 598, 1020
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 1035
Cfr13I GGNCC 2 cut(s) 376, 725
Csp6I GTAC 2 cut(s) 521, 1082
CspAI ACCGGT 1 cut(s) 1035
CviAII CATG 5 cut(s) 216, 262, 505, 970, 1287
CviQI GTAC 2 cut(s) 521, 1082
DdeI CTNAG 3 cut(s) 203, 356, 459
DpnI GATC 9 cut(s) 99, 105, 115, 321, 479, 528, 975, 1189, 1224
DpnII GATC 9 cut(s) 97, 103, 113, 319, 477, 526, 973, 1187, 1222
DraI TTTAAA 1 cut(s) 951
EaeI YGGCCR 1 cut(s) 1029
Eco130I CCWWGG 2 cut(s) 560, 977
Eco31I GGTCTC 1 cut(s) 1261
Eco57I CTGAAG 3 cut(s) 417, 714, 1131
EcoO109I RGGNCCY 1 cut(s) 725
EcoRI GAATTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 560, 977
ErhI CCWWGG 2 cut(s) 560, 977
Esp3I CGTCTC 2 cut(s) 754, 1103
FaeI CATG 5 cut(s) 219, 265, 508, 973, 1290
FatI CATG 5 cut(s) 215, 261, 504, 969, 1286
FauI CCCGC 1 cut(s) 269
FauNDI CATATG 1 cut(s) 936
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 6 cut(s) 234, 594, 783, 875, 1008, 1023
FokI GGATG 5 cut(s) 142, 146, 476, 602, 689
Fsp4HI GCNGC 6 cut(s) 234, 594, 783, 875, 1008, 1023
FspBI CTAG 3 cut(s) 108, 717, 1019
GlaI GCGC 1 cut(s) 220
GluI GCNGC 6 cut(s) 234, 594, 783, 875, 1008, 1023
GsaI CCCAGC 1 cut(s) 725
GsuI CTGGAG 1 cut(s) 1106
HaeIII GGCC 4 cut(s) 378, 727, 877, 1031
HapII CCGG 3 cut(s) 788, 886, 1036
HhaI GCGC 1 cut(s) 221
Hin1II CATG 5 cut(s) 219, 265, 508, 973, 1290
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HpaII CCGG 3 cut(s) 788, 886, 1036
HphI GGTGA 3 cut(s) 403, 937, 1057
Hpy166II GTNNAC 4 cut(s) 314, 521, 883, 1159
Hpy188I TCNGA 8 cut(s) 118, 142, 549, 636, 703, 733, 801, 1150
Hpy188III TCNNGA 5 cut(s) 101, 307, 481, 490, 788
Hpy8I GTNNAC 4 cut(s) 314, 521, 883, 1159
HpyAV CCTTC 6 cut(s) 72, 738, 864, 980, 1155, 1203
HpyCH4III ACNGT 2 cut(s) 455, 772
HpyCH4IV ACGT 2 cut(s) 747, 1063
HpyCH4V TGCA 8 cut(s) 176, 314, 373, 554, 782, 944, 1010, 1258
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 590, 1028
HpyF3I CTNAG 3 cut(s) 203, 356, 459
HpySE526I ACGT 2 cut(s) 747, 1063
Hsp92II CATG 5 cut(s) 219, 265, 508, 973, 1290
HspAI GCGC 1 cut(s) 219
Kpn2I TCCGGA 1 cut(s) 787
Kzo9I GATC 9 cut(s) 97, 103, 113, 319, 477, 526, 973, 1187, 1222
LmnI GCTCC 4 cut(s) 223, 492, 790, 834
Lsp1109I GCAGC 5 cut(s) 245, 580, 794, 994, 1034
LweI GCATC 2 cut(s) 433, 580
MaeI CTAG 3 cut(s) 108, 717, 1019
MaeII ACGT 2 cut(s) 747, 1063
MaeIII GTNAC 2 cut(s) 391, 565
MalI GATC 9 cut(s) 99, 105, 115, 321, 479, 528, 975, 1189, 1224
MboI GATC 9 cut(s) 97, 103, 113, 319, 477, 526, 973, 1187, 1222
MboII GAAGA 3 cut(s) 123, 632, 651
MflI RGATCY 5 cut(s) 319, 477, 973, 1187, 1222
MhlI GDGCHC 2 cut(s) 316, 934
MlsI TGGCCA 1 cut(s) 1031
MluCI AATT 9 cut(s) 124, 143, 209, 244, 440, 629, 1101, 1175, 1252
MluNI TGGCCA 1 cut(s) 1031
MmeI TCCRAC 2 cut(s) 745, 754
Mox20I TGGCCA 1 cut(s) 1031
MroI TCCGGA 1 cut(s) 787
MroXI GAANNNNTTC 1 cut(s) 795
MscI TGGCCA 1 cut(s) 1031
MseI TTAA 6 cut(s) 123, 348, 402, 654, 950, 1291
Msp20I TGGCCA 1 cut(s) 1031
MspA1I CMGCKG 1 cut(s) 1025
MspI CCGG 3 cut(s) 788, 886, 1036
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 2 cut(s) 221, 600
MwoI GCNNNNNNNGC 3 cut(s) 204, 590, 1028
NdeI CATATG 1 cut(s) 936
NdeII GATC 9 cut(s) 97, 103, 113, 319, 477, 526, 973, 1187, 1222
NheI GCTAGC 1 cut(s) 1018
NlaIII CATG 5 cut(s) 219, 265, 508, 973, 1290
NlaIV GGNNCC 6 cut(s) 479, 488, 726, 890, 975, 1224
NmuCI GTSAC 2 cut(s) 391, 565
NspI RCATGY 3 cut(s) 219, 508, 1290
NspV TTCGAA 1 cut(s) 662
PciI ACATGT 1 cut(s) 1286
PdmI GAANNNNTTC 1 cut(s) 795
PflMI CCANNNNNTGG 1 cut(s) 1232
PinAI ACCGGT 1 cut(s) 1035
PkrI GCNGC 6 cut(s) 235, 595, 784, 876, 1009, 1024
PscI ACATGT 1 cut(s) 1286
Psp6I CCWGG 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 6 cut(s) 479, 488, 726, 890, 975, 1224
PspPI GGNCC 2 cut(s) 376, 725
PstI CTGCAG 1 cut(s) 946
PsuI RGATCY 5 cut(s) 319, 477, 973, 1187, 1222
PvuII CAGCTG 1 cut(s) 1025
RsaI GTAC 2 cut(s) 522, 1083
RsaNI GTAC 2 cut(s) 521, 1082
SaqAI TTAA 6 cut(s) 123, 348, 402, 654, 950, 1291
SatI GCNGC 6 cut(s) 234, 594, 783, 875, 1008, 1023
Sau3AI GATC 9 cut(s) 97, 103, 113, 319, 477, 526, 973, 1187, 1222
Sau96I GGNCC 2 cut(s) 376, 725
ScaI AGTACT 1 cut(s) 1083
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 316, 934
SfaNI GCATC 2 cut(s) 433, 580
SfcI CTRYAG 2 cut(s) 879, 942
SfuI TTCGAA 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 1001
SmoI CTYRAG 1 cut(s) 1001
Sse9I AATT 9 cut(s) 124, 143, 209, 244, 440, 629, 1101, 1175, 1252
SsiI CCGC 6 cut(s) 221, 276, 600, 758, 874, 892
SspMI CTAG 3 cut(s) 108, 717, 1019
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 2 cut(s) 560, 977
TaaI ACNGT 2 cut(s) 455, 772
TaiI ACGT 2 cut(s) 750, 1066
TaqI TCGA 2 cut(s) 662, 818
TasI AATT 9 cut(s) 124, 143, 209, 244, 440, 629, 1101, 1175, 1252
TatI WGTACW 2 cut(s) 520, 1081
TauI GCSGC 1 cut(s) 877
Tru1I TTAA 6 cut(s) 123, 348, 402, 654, 950, 1291
Tru9I TTAA 6 cut(s) 123, 348, 402, 654, 950, 1291
TseFI GTSAC 2 cut(s) 391, 565
TseI GCWGC 5 cut(s) 233, 593, 782, 1007, 1022
Tsp45I GTSAC 2 cut(s) 391, 565
TspDTI ATGAA 7 cut(s) 17, 54, 483, 513, 693, 870, 1188
Van91I CCANNNNNTGG 1 cut(s) 1232
VneI GTGCAC 1 cut(s) 312
XapI RAATTY 6 cut(s) 143, 209, 244, 629, 1175, 1252
XceI RCATGY 3 cut(s) 219, 508, 1290
XcmI CCANNNNNNNNNTGG 1 cut(s) 1039
XmiI GTMKAC 1 cut(s) 882
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 3 cut(s) 108, 717, 1019
ZrmI AGTACT 1 cut(s) 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.