Rroxscaffold_4G00293680

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014957
Physical Location & Seq
Forward (+)
13895135 .. 13898327
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293680.1

Sequence Viewer

Length: 1047 bp
ATGAAGTGTTTTTATTTCTACAACAGAGAGAAGAATGATGAACCAAAGACTACCAAGTCTCCTTCTGGTCATTCCACTTCCTCTTTCTTTTCGCTTGATCGCGATCCAAGAAGATCAGAGTTTAATTCTCAGGATGTCTCGGAATTTAGCACAACATCCTCTGTCAAATCATTTGCAGCAATGTCTCAAAGACAAAGCAACCTAAGAGAATTCACATGTGCGGAGCTGAAAGCAGCAACAAAGAATTTTAGTCTCTCCCTCATGCTTGGAGAGGGTGGGTTTGGTGGTGTGTATAGGGGTATCATCAGGAGTGCACAAGATCCACATAAGAAGATAGATGTCGCTGTTAAACAACTGAGTAAAAGGGGATTGCAGGGCCACAAAGAGTGGGTGACTGAAGTTAATGTTTTAGGGATTGTTGAGCATCAAAATCTTGTCAAATTACTGGGCTACTGCGCTGAGGATGATGAAAGAGGGATCCAGAGGCTCCTGATATATGAATACATGCCCAACAGGAGTGTACAAGATCACTTAACAAGCCGGTTTCAGATTGCACTCCCTTGGGTCACAAGGGTCAAAATAGCACAGGATGCTGCTCGAGGATTAGCATATCTCCATGAAGAAATGGAATTTCAGATTATCTTCAGGGATTTCAAGTCTTCAAACATACTTTTGGATGAACATTGGAATGCAAAGTTATCAGACTTTGGATTAGCCCGGCTGGGGCCTTCAGACGGAGTGAGCCACGTCTCTACTGCCGTTGTTGGAACAGTTGGATATGCAGCTCCTGAATACATTCAAACAGGACATCTCACGTCGAAAAGTGATGTCTGGAGCTACGGCATTTTCCTTTTTGAACTCATCACAGGAAGGCGGCCTGTGGACCGAAACCGCCCCAAGAATGAGCAAAAGCTCTTGGAATGGGTGAGAGCACATCTGTCTGCAGATTCAAAAAAGTTTCAGCTTATTATGGATCCAAGGCTCGAAGGAAGTATTCCCTCAAGGCTGCACAAAAGCTTGCAGCTGTGGCCAACCGGTGCTTGGTAA

Protein Analysis

348

Amino Acids

39.58

Weight (kDa)

9.07

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 87 - 301 5.3e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 88 - 304 6.7e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39110 AT2G39110
fragaria_vesca FvH4_7g18950
malus_domestica MD01G1105200.v1.1
prunus_persica Prupe.2G210500_v2.0.a1 Prupe.2G210500_v2.0.a1
pyrus_communis pycom01g13170 pycom07g16590
rosa_chinensis RchiOBHm_Chr1g0362881
rosa_laevigata RLG00000027615
rosa_multiflora Rmu_sc0001502.1_g000012
rosa_roxburghii Rroxscaffold_4G00293680
rosa_rugosa Rorug01G0302100 Rorug01G0302100
rosa_samantha Rh1BG274200
rosa_wichuraiana Rw1G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AccII CGCG 1 cut(s) 102
AciI CCGC 3 cut(s) 221, 874, 892
AclWI GGATC 6 cut(s) 98, 314, 472, 485, 968, 981
AcoI YGGCCR 1 cut(s) 1028
AcsI RAATTY 4 cut(s) 143, 209, 244, 629
AcuI CTGAAG 3 cut(s) 417, 628, 714
AfaI GTAC 1 cut(s) 522
AfiI CCNNNNNNNGG 3 cut(s) 723, 734, 1041
AflIII ACRYGT 1 cut(s) 215
AgeI ACCGGT 1 cut(s) 1034
AgsI TTSAA 5 cut(s) 655, 663, 800, 857, 951
AjiI CACGTC 2 cut(s) 748, 816
AluBI AGCT 7 cut(s) 226, 785, 837, 913, 964, 1017, 1024
AluI AGCT 7 cut(s) 226, 785, 837, 913, 964, 1017, 1024
Alw21I GWGCWC 2 cut(s) 316, 934
Alw26I GTCTC 5 cut(s) 63, 142, 189, 257, 754
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 6 cut(s) 98, 314, 472, 485, 968, 981
AlwNI CAGNNNCTG 1 cut(s) 788
Ama87I CYCGRG 1 cut(s) 597
AoxI GGCC 4 cut(s) 376, 725, 875, 1028
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 6 cut(s) 176, 233, 593, 782, 1006, 1021
ApoI RAATTY 4 cut(s) 143, 209, 244, 629
AsiGI ACCGGT 1 cut(s) 1034
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 3 cut(s) 376, 725, 883
AsuC2I CCSGG 1 cut(s) 718
AsuHPI GGTGA 2 cut(s) 403, 937
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 1 cut(s) 883
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 1030
BamHI GGATCC 2 cut(s) 477, 973
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 316, 934
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 6 cut(s) 188, 245, 580, 794, 993, 1033
BceAI ACGGC 2 cut(s) 743, 856
BcnI CCSGG 1 cut(s) 718
BcoDI GTCTC 5 cut(s) 63, 142, 189, 257, 754
BfmI CTRYAG 1 cut(s) 942
BisI GCNGC 7 cut(s) 177, 234, 594, 783, 875, 1007, 1022
BlsI GCNGC 7 cut(s) 178, 235, 595, 784, 876, 1008, 1023
Bme1390I CCNGG 1 cut(s) 718
Bme18I GGWCC 1 cut(s) 883
BmeT110I CYCGRG 1 cut(s) 597
BmgBI CACGTC 2 cut(s) 748, 816
BmgT120I GGNCC 3 cut(s) 376, 725, 883
BmiI GGNNCC 4 cut(s) 479, 488, 726, 975
BmrFI CCNGG 1 cut(s) 718
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 2 cut(s) 433, 580
BmuI ACTGGG 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 853
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 985
BpuMI CCSGG 1 cut(s) 718
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 560, 977
BsaWI WCCGGW 1 cut(s) 1034
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 3 cut(s) 723, 734, 1041
Bse118I RCCGGY 2 cut(s) 540, 1034
Bse1I ACTGG 1 cut(s) 450
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 560, 977
BseGI GGATG 5 cut(s) 139, 155, 469, 595, 682
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 723, 734, 1041
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 3 cut(s) 143, 347, 450
BseNI ACTGG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 6 cut(s) 188, 245, 580, 794, 993, 1033
BseYI CCCAGC 1 cut(s) 721
BsgI GTGCAG 1 cut(s) 992
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 4 cut(s) 378, 727, 877, 1030
BshTI ACCGGT 1 cut(s) 1034
BsiHKAI GWGCWC 2 cut(s) 316, 934
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 3 cut(s) 541, 718, 1035
BslI CCNNNNNNNGG 3 cut(s) 723, 734, 1041
BsmAI GTCTC 5 cut(s) 63, 142, 189, 257, 754
BsmBI CGTCTC 1 cut(s) 754
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 4 cut(s) 378, 727, 877, 1030
BsoBI CYCGRG 1 cut(s) 597
Bsp1286I GDGCHC 2 cut(s) 316, 934
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 7 cut(s) 97, 103, 113, 319, 477, 526, 973
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 3 cut(s) 221, 874, 892
BspANI GGCC 4 cut(s) 378, 727, 877, 1030
BspCNI CTCAG 3 cut(s) 142, 348, 451
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 4 cut(s) 479, 488, 726, 975
BspMAI CTGCAG 1 cut(s) 946
BspPI GGATC 6 cut(s) 98, 314, 472, 485, 968, 981
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 2 cut(s) 540, 1034
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 1 cut(s) 450
BssAI RCCGGY 2 cut(s) 540, 1034
BssECI CCNNGG 2 cut(s) 560, 977
BssMI GATC 7 cut(s) 97, 103, 113, 319, 477, 526, 973
BssT1I CCWWGG 2 cut(s) 560, 977
Bst4CI ACNGT 1 cut(s) 772
BstAPI GCANNNNNTGC 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 1019
BstDEI CTNAG 4 cut(s) 129, 203, 356, 459
BstF5I GGATG 5 cut(s) 139, 155, 469, 595, 682
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 7 cut(s) 100, 106, 116, 322, 480, 529, 976
BstMAI GTCTC 5 cut(s) 63, 142, 189, 257, 754
BstMBI GATC 7 cut(s) 97, 103, 113, 319, 477, 526, 973
BstMWI GCNNNNNNNGC 2 cut(s) 590, 1027
BstNSI RCATGY 2 cut(s) 219, 508
BstSCI CCNGG 1 cut(s) 716
BstSFI CTRYAG 1 cut(s) 942
BstSLI GKGCMC 1 cut(s) 316
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 6 cut(s) 188, 245, 580, 794, 993, 1033
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 3 cut(s) 319, 477, 973
BstYI RGATCY 3 cut(s) 319, 477, 973
BsuRI GGCC 4 cut(s) 378, 727, 877, 1030
BtrI CACGTC 2 cut(s) 748, 816
BtsCI GGATG 5 cut(s) 139, 155, 469, 595, 682
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 1019
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 2 cut(s) 540, 1034
Cfr13I GGNCC 3 cut(s) 376, 725, 883
Csp6I GTAC 1 cut(s) 521
CspAI ACCGGT 1 cut(s) 1034
CviAII CATG 4 cut(s) 216, 262, 505, 617
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 4 cut(s) 129, 203, 356, 459
DpnI GATC 7 cut(s) 99, 105, 115, 321, 479, 528, 975
DpnII GATC 7 cut(s) 97, 103, 113, 319, 477, 526, 973
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 1028
Eco130I CCWWGG 2 cut(s) 560, 977
Eco47I GGWCC 1 cut(s) 883
Eco57I CTGAAG 3 cut(s) 417, 628, 714
Eco88I CYCGRG 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 725
EcoRI GAATTC 1 cut(s) 209
EcoT14I CCWWGG 2 cut(s) 560, 977
ErhI CCWWGG 2 cut(s) 560, 977
Esp3I CGTCTC 1 cut(s) 754
FaeI CATG 4 cut(s) 219, 265, 508, 620
FatI CATG 4 cut(s) 215, 261, 504, 616
Fnu4HI GCNGC 7 cut(s) 177, 234, 594, 783, 875, 1007, 1022
FokI GGATG 5 cut(s) 142, 146, 476, 602, 689
Fsp4HI GCNGC 7 cut(s) 177, 234, 594, 783, 875, 1007, 1022
GlaI GCGC 1 cut(s) 457
GluI GCNGC 7 cut(s) 177, 234, 594, 783, 875, 1007, 1022
GsaI CCCAGC 1 cut(s) 725
GsuI CTGGAG 1 cut(s) 853
HaeIII GGCC 4 cut(s) 378, 727, 877, 1030
HapII CCGG 3 cut(s) 541, 718, 1035
HhaI GCGC 1 cut(s) 458
Hin1II CATG 4 cut(s) 219, 265, 508, 620
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 1015
HinfI GANTC 1 cut(s) 947
HpaII CCGG 3 cut(s) 541, 718, 1035
HphI GGTGA 2 cut(s) 403, 937
Hpy166II GTNNAC 3 cut(s) 314, 521, 883
Hpy188I TCNGA 6 cut(s) 118, 142, 549, 636, 703, 733
Hpy188III TCNNGA 7 cut(s) 101, 131, 307, 481, 490, 788, 832
Hpy8I GTNNAC 3 cut(s) 314, 521, 883
Hpy99I CGWCG 1 cut(s) 820
HpyAV CCTTC 4 cut(s) 72, 738, 864, 980
HpyCH4III ACNGT 1 cut(s) 772
HpyCH4IV ACGT 2 cut(s) 747, 815
HpyCH4V TGCA 9 cut(s) 176, 314, 373, 554, 692, 782, 944, 1009, 1021
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 1027
HpyF3I CTNAG 4 cut(s) 129, 203, 356, 459
HpySE526I ACGT 2 cut(s) 747, 815
Hsp92II CATG 4 cut(s) 219, 265, 508, 620
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 7 cut(s) 97, 103, 113, 319, 477, 526, 973
LmnI GCTCC 4 cut(s) 223, 492, 790, 834
Lsp1109I GCAGC 6 cut(s) 188, 245, 580, 794, 993, 1033
LweI GCATC 2 cut(s) 433, 580
MaeII ACGT 2 cut(s) 747, 815
MaeIII GTNAC 2 cut(s) 391, 565
MalI GATC 7 cut(s) 99, 105, 115, 321, 479, 528, 975
MboI GATC 7 cut(s) 97, 103, 113, 319, 477, 526, 973
MboII GAAGA 6 cut(s) 43, 123, 343, 632, 634, 651
MflI RGATCY 3 cut(s) 319, 477, 973
MhlI GDGCHC 2 cut(s) 316, 934
MlsI TGGCCA 1 cut(s) 1030
MluCI AATT 6 cut(s) 124, 143, 209, 244, 440, 629
MluNI TGGCCA 1 cut(s) 1030
MmeI TCCRAC 2 cut(s) 745, 754
MnlI CCTC 9 cut(s) 91, 169, 265, 269, 454, 467, 477, 593, 1009
Mox20I TGGCCA 1 cut(s) 1030
MroXI GAANNNNTTC 1 cut(s) 795
MscI TGGCCA 1 cut(s) 1030
MseI TTAA 4 cut(s) 123, 348, 402, 533
MslI CAYNNNNRTG 1 cut(s) 687
Msp20I TGGCCA 1 cut(s) 1030
MspA1I CMGCKG 1 cut(s) 1024
MspI CCGG 3 cut(s) 541, 718, 1035
MspR9I CCNGG 1 cut(s) 718
Mva1269I GAATGC 1 cut(s) 694
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 590, 1027
NciI CCSGG 1 cut(s) 718
NdeII GATC 7 cut(s) 97, 103, 113, 319, 477, 526, 973
NlaIII CATG 4 cut(s) 219, 265, 508, 620
NlaIV GGNNCC 4 cut(s) 479, 488, 726, 975
NmuCI GTSAC 2 cut(s) 391, 565
NruI TCGCGA 1 cut(s) 102
NspI RCATGY 2 cut(s) 219, 508
PaeR7I CTCGAG 1 cut(s) 597
PciI ACATGT 1 cut(s) 215
PctI GAATGC 1 cut(s) 694
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 1 cut(s) 947
PinAI ACCGGT 1 cut(s) 1034
PkrI GCNGC 7 cut(s) 178, 235, 595, 784, 876, 1008, 1023
PscI ACATGT 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 721
PspN4I GGNNCC 4 cut(s) 479, 488, 726, 975
PspPI GGNCC 3 cut(s) 376, 725, 883
PspXI VCTCGAGB 1 cut(s) 597
PstI CTGCAG 1 cut(s) 946
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 3 cut(s) 319, 477, 973
PvuII CAGCTG 1 cut(s) 1024
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 4 cut(s) 123, 348, 402, 533
SatI GCNGC 7 cut(s) 177, 234, 594, 783, 875, 1007, 1022
Sau3AI GATC 7 cut(s) 97, 103, 113, 319, 477, 526, 973
Sau96I GGNCC 3 cut(s) 376, 725, 883
ScrFI CCNGG 1 cut(s) 718
SduI GDGCHC 2 cut(s) 316, 934
SfaNI GCATC 2 cut(s) 433, 580
SfcI CTRYAG 1 cut(s) 942
Sfr274I CTCGAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 883
SlaI CTCGAG 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 2 cut(s) 597, 1000
SmoI CTYRAG 2 cut(s) 597, 1000
Sse9I AATT 6 cut(s) 124, 143, 209, 244, 440, 629
SsiI CCGC 3 cut(s) 221, 874, 892
StyD4I CCNGG 1 cut(s) 716
StyI CCWWGG 2 cut(s) 560, 977
TaaI ACNGT 1 cut(s) 772
TaiI ACGT 2 cut(s) 750, 818
TaqI TCGA 3 cut(s) 598, 818, 984
TaqII GACCGA 1 cut(s) 900
TasI AATT 6 cut(s) 124, 143, 209, 244, 440, 629
TatI WGTACW 1 cut(s) 520
TauI GCSGC 1 cut(s) 877
TfiI GAWTC 1 cut(s) 947
Tru1I TTAA 4 cut(s) 123, 348, 402, 533
Tru9I TTAA 4 cut(s) 123, 348, 402, 533
TseFI GTSAC 2 cut(s) 391, 565
TseI GCWGC 6 cut(s) 176, 233, 593, 782, 1006, 1021
Tsp45I GTSAC 2 cut(s) 391, 565
TspDTI ATGAA 6 cut(s) 17, 54, 483, 513, 633, 693
TspGWI ACGGA 1 cut(s) 750
VneI GTGCAC 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 883
XapI RAATTY 4 cut(s) 143, 209, 244, 629
XceI RCATGY 2 cut(s) 219, 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 1038
XhoI CTCGAG 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.