AT2G39650

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012503
Physical Location & Seq
Reverse (-)
16527730 .. 16529494
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39650.2

Sequence Viewer

Length: 876 bp
ATGGGTATGGACTTGAGAGTTGTTCCGGCGGAGGAATGGTTGAATCGAGGGATAGATTCGAGTCACGACGGTGAACATGACCTAGGCCTAATGGTTACAGATTTTCTGGAAACGGGAGGTGGTAGCGGTGGTGCTGGTTCCTGGTGCAGCAGCGACAGCGATTCTGGATTCCCAGATCCTTCTTACCTTTCCGATAAGATTCAGTATCTCAAGTACTCTATGGCTCAACACGAAACCGAGGTTCTCTCGGTGGTTCGTACATTGATGCTTACTATTAAGGAGAAAGATCTACACTCTGTGAAATCCGGTACATGTAACGCTAGTTGCATCAGGTTTTATCTCGCTAAGCTTTTGAGACTTTCTGGATATGATGCAGCTGTATGTTCAGCTAGATGGCAAGGTGGTGGCAAAGTTCCTGGTGGAGATAATGAGTATATAGATATCATATTGAGTGATACTGAAGTTGGTCAAGATGATCGTTTGATTGTTGATATTGATTTCAGAAGTCATTTTGAGATCGCTAGAGCTGTGGATTCTTACCAACGGATAATGGAATCACTTCCTGTGGTTTATGTAGGAACTGTTGCAAGATTAAACCAGTTCCTTCAAGTAATGGTTGATGCAGCGAAATTCTCCTTAAAGCAGAATTCAATGCCGTTACCTCCATGGAGATCTTTGAACTACCTGCGATCCAAATGGCATTCACCTCACAAAAGGCATCTCGGTCCTATCGATCAACAAGGTCCTGGAATGTTCTCACCGGGATTACATGGACAGTGTGCTGAGAATTTAAAGAGGCTTCAGTTTGCTCTCCAGGTTGAACAAGAGGCCGAGAGATTCATGAAGAAGAAGAGCGGTTTTAGCCGCAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

291

Amino Acids

32.54

Weight (kDa)

6.31

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 5 - 177 7.1e-59 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39650 AT2G39650
fragaria_vesca FvH4_7g22510
malus_domestica MD01G1134400.v1.1 MD07G1198800.v1.1 MD07G1198900.v1.1
prunus_persica Prupe.2G235800_v2.0.a1
pyrus_communis pycom01g15510 pycom07g18610
rosa_chinensis RchiOBHm_Chr1g0367191
rosa_laevigata RLG00000027293
rosa_multiflora Rmu_sc0006367.1_g000003
rosa_roxburghii Rroxscaffold_4G00289560
rosa_rugosa Rorug01G0335100
rosa_samantha Rh1AG341900 Rh1BG302200 Rh1CG318600 Rh1DG334700
rosa_wichuraiana Rw1G030380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 693
AccBSI CCGCTC 1 cut(s) 855
AciI CCGC 4 cut(s) 29, 126, 855, 865
AclWI GGATC 2 cut(s) 170, 684
AcsI RAATTY 3 cut(s) 629, 646, 787
AcuI CTGAAG 2 cut(s) 480, 785
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 3 cut(s) 215, 259, 310
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 5 cut(s) 43, 608, 651, 679, 821
AjnI CCWGG 4 cut(s) 140, 415, 745, 813
AleI CACNNNNGTG 1 cut(s) 69
AluBI AGCT 4 cut(s) 349, 377, 389, 527
AluI AGCT 4 cut(s) 349, 377, 389, 527
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 170, 684
AoxI GGCC 2 cut(s) 85, 828
ApeKI GCWGC 4 cut(s) 147, 150, 374, 623
ApoI RAATTY 3 cut(s) 629, 646, 787
Asp700I GAANNNNTTC 1 cut(s) 558
AspA2I CCTAGG 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 725, 743
AsuC2I CCSGG 1 cut(s) 762
AsuHPI GGTGA 3 cut(s) 83, 696, 750
AvaII GGWCC 2 cut(s) 725, 743
AvrII CCTAGG 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BbvI GCAGC 4 cut(s) 159, 162, 386, 635
BccI CCATC 1 cut(s) 387
BceAI ACGGC 1 cut(s) 640
BciT130I CCWGG 4 cut(s) 142, 417, 747, 815
BcnI CCSGG 1 cut(s) 762
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 4 cut(s) 83, 321, 390, 522
BfuAI ACCTGC 1 cut(s) 693
BglII AGATCT 2 cut(s) 286, 671
BisI GCNGC 5 cut(s) 148, 151, 375, 624, 865
BlnI CCTAGG 1 cut(s) 82
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 5 cut(s) 149, 152, 376, 625, 866
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 5 cut(s) 142, 417, 747, 762, 815
Bme18I GGWCC 2 cut(s) 725, 743
BmgT120I GGNCC 2 cut(s) 725, 743
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 5 cut(s) 142, 417, 747, 762, 815
BmsI GCATC 5 cut(s) 255, 336, 361, 610, 727
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 797
Bpu1102I GCTNAGC 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 34, 194
BpuMI CCSGG 1 cut(s) 762
Bsa29I ATCGAT 1 cut(s) 732
BsaJI CCNNGG 3 cut(s) 82, 237, 665
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bse1I ACTGG 1 cut(s) 598
BseBI CCWGG 4 cut(s) 142, 417, 747, 815
BseCI ATCGAT 1 cut(s) 732
BseDI CCNNGG 3 cut(s) 82, 237, 665
BseMII CTCAG 1 cut(s) 774
BseNI ACTGG 1 cut(s) 598
BseXI GCAGC 4 cut(s) 159, 162, 386, 635
BsgI GTGCAG 1 cut(s) 166
BshFI GGCC 2 cut(s) 87, 830
BshVI ATCGAT 1 cut(s) 732
BsiSI CCGG 3 cut(s) 26, 306, 761
BsmAI GTCTC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 2 cut(s) 87, 830
Bsp143I GATC 7 cut(s) 175, 286, 475, 516, 671, 689, 733
Bsp1720I GCTNAGC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 4 cut(s) 29, 126, 855, 865
BspANI GGCC 2 cut(s) 87, 830
BspCNI CTCAG 1 cut(s) 775
BspDI ATCGAT 1 cut(s) 732
BspHI TCATGA 1 cut(s) 840
BspLI GGNNCC 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 693
BspPI GGATC 2 cut(s) 170, 684
BspQI GCTCTTC 1 cut(s) 845
BsrBI CCGCTC 1 cut(s) 855
BsrI ACTGG 1 cut(s) 598
BssECI CCNNGG 3 cut(s) 82, 237, 665
BssMI GATC 7 cut(s) 175, 286, 475, 516, 671, 689, 733
BssT1I CCWWGG 2 cut(s) 82, 665
Bst2UI CCWGG 4 cut(s) 142, 417, 747, 815
Bst4CI ACNGT 3 cut(s) 71, 583, 777
Bst6I CTCTTC 1 cut(s) 845
BstDEI CTNAG 2 cut(s) 345, 783
BstDSI CCRYGG 1 cut(s) 665
BstKTI GATC 7 cut(s) 178, 289, 478, 519, 674, 692, 736
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 7 cut(s) 175, 286, 475, 516, 671, 689, 733
BstMWI GCNNNNNNNGC 2 cut(s) 156, 861
BstNI CCWGG 4 cut(s) 142, 417, 747, 815
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 5 cut(s) 140, 415, 745, 760, 813
BstV1I GCAGC 4 cut(s) 159, 162, 386, 635
BstX2I RGATCY 3 cut(s) 175, 286, 671
BstYI RGATCY 3 cut(s) 175, 286, 671
Bsu15I ATCGAT 1 cut(s) 732
BsuRI GGCC 2 cut(s) 87, 830
BsuTUI ATCGAT 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 782
BveI ACCTGC 1 cut(s) 693
CciI TCATGA 1 cut(s) 840
Cfr13I GGNCC 2 cut(s) 725, 743
ClaI ATCGAT 1 cut(s) 732
Csp6I GTAC 3 cut(s) 214, 258, 309
CviAII CATG 5 cut(s) 77, 312, 666, 770, 841
CviJI RGCY 9 cut(s) 87, 224, 349, 377, 389, 527, 799, 830, 864
CviKI_1 RGCY 9 cut(s) 87, 224, 349, 377, 389, 527, 799, 830, 864
CviQI GTAC 3 cut(s) 214, 258, 309
DdeI CTNAG 2 cut(s) 345, 783
DpnI GATC 7 cut(s) 177, 288, 477, 518, 673, 691, 735
DpnII GATC 7 cut(s) 175, 286, 475, 516, 671, 689, 733
DraI TTTAAA 1 cut(s) 792
DraIII CACNNNGTG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 845
EarI CTCTTC 1 cut(s) 845
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 82, 665
Eco147I AGGCCT 1 cut(s) 87
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 725, 743
Eco57I CTGAAG 2 cut(s) 480, 785
EcoO109I RGGNCCY 1 cut(s) 743
EcoRI GAATTC 1 cut(s) 646
EcoRII CCWGG 4 cut(s) 140, 415, 745, 813
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 82, 665
ErhI CCWWGG 2 cut(s) 82, 665
FaeI CATG 5 cut(s) 80, 315, 669, 773, 844
FatI CATG 5 cut(s) 76, 311, 665, 769, 840
Fnu4HI GCNGC 5 cut(s) 148, 151, 375, 624, 865
Fsp4HI GCNGC 5 cut(s) 148, 151, 375, 624, 865
FspBI CTAG 4 cut(s) 83, 321, 390, 522
GluI GCNGC 5 cut(s) 148, 151, 375, 624, 865
GsuI CTGGAG 1 cut(s) 797
HaeIII GGCC 2 cut(s) 87, 830
HapII CCGG 3 cut(s) 26, 306, 761
Hin1II CATG 5 cut(s) 80, 315, 669, 773, 844
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 9 cut(s) 43, 56, 61, 161, 168, 199, 533, 554, 837
HpaII CCGG 3 cut(s) 26, 306, 761
HphI GGTGA 3 cut(s) 83, 696, 750
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 193, 503
Hpy188III TCNNGA 6 cut(s) 65, 107, 165, 363, 470, 841
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 189, 614
HpyCH4III ACNGT 3 cut(s) 71, 583, 777
HpyCH4V TGCA 5 cut(s) 147, 327, 374, 587, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 861
HpyF3I CTNAG 2 cut(s) 345, 783
Hsp92II CATG 5 cut(s) 80, 315, 669, 773, 844
Kzo9I GATC 7 cut(s) 175, 286, 475, 516, 671, 689, 733
LguI GCTCTTC 1 cut(s) 845
Lsp1109I GCAGC 4 cut(s) 159, 162, 386, 635
LweI GCATC 5 cut(s) 255, 336, 361, 610, 727
MaeI CTAG 4 cut(s) 83, 321, 390, 522
MaeIII GTNAC 4 cut(s) 62, 94, 314, 657
MalI GATC 7 cut(s) 177, 288, 477, 518, 673, 691, 735
MbiI CCGCTC 1 cut(s) 855
MboI GATC 7 cut(s) 175, 286, 475, 516, 671, 689, 733
MboII GAAGA 3 cut(s) 856, 859, 862
MflI RGATCY 3 cut(s) 175, 286, 671
MluCI AATT 3 cut(s) 629, 646, 787
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 8 cut(s) 25, 41, 110, 232, 672, 717, 789, 820
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 4 cut(s) 276, 593, 638, 791
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 3 cut(s) 26, 306, 761
MspR9I CCNGG 5 cut(s) 142, 417, 747, 762, 815
Mva1269I GAATGC 1 cut(s) 700
MvaI CCWGG 4 cut(s) 142, 417, 747, 815
MwoI GCNNNNNNNGC 2 cut(s) 156, 861
NciI CCSGG 1 cut(s) 762
NcoI CCATGG 1 cut(s) 665
NdeII GATC 7 cut(s) 175, 286, 475, 516, 671, 689, 733
NlaIII CATG 5 cut(s) 80, 315, 669, 773, 844
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 69
PagI TCATGA 1 cut(s) 840
PceI AGGCCT 1 cut(s) 87
PciI ACATGT 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 845
PcsI WCGNNNNNNNCGW 1 cut(s) 729
PctI GAATGC 1 cut(s) 700
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 8 cut(s) 43, 56, 161, 168, 199, 533, 554, 837
PfoI TCCNGGA 1 cut(s) 745
PkrI GCNGC 5 cut(s) 149, 152, 376, 625, 866
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 743
PscI ACATGT 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 4 cut(s) 140, 415, 745, 813
PspGI CCWGG 4 cut(s) 140, 415, 745, 813
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 725, 743
PspPPI RGGWCCY 1 cut(s) 743
PsuI RGATCY 3 cut(s) 175, 286, 671
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 3 cut(s) 215, 259, 310
RsaNI GTAC 3 cut(s) 214, 258, 309
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 845
SaqAI TTAA 4 cut(s) 276, 593, 638, 791
SatI GCNGC 5 cut(s) 148, 151, 375, 624, 865
Sau3AI GATC 7 cut(s) 175, 286, 475, 516, 671, 689, 733
Sau96I GGNCC 2 cut(s) 725, 743
ScaI AGTACT 1 cut(s) 215
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 5 cut(s) 142, 417, 747, 762, 815
SfaNI GCATC 5 cut(s) 255, 336, 361, 610, 727
SinI GGWCC 2 cut(s) 725, 743
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 2 cut(s) 13, 209
SmoI CTYRAG 2 cut(s) 13, 209
Sse9I AATT 3 cut(s) 629, 646, 787
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 4 cut(s) 29, 126, 855, 865
SspMI CTAG 4 cut(s) 83, 321, 390, 522
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 5 cut(s) 140, 415, 745, 760, 813
StyI CCWWGG 2 cut(s) 82, 665
TaaI ACNGT 3 cut(s) 71, 583, 777
TaqI TCGA 3 cut(s) 46, 59, 732
TaqII GACCGA 1 cut(s) 713
TasI AATT 3 cut(s) 629, 646, 787
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 867
TfiI GAWTC 8 cut(s) 43, 56, 161, 168, 199, 533, 554, 837
Tru1I TTAA 4 cut(s) 276, 593, 638, 791
Tru9I TTAA 4 cut(s) 276, 593, 638, 791
TscAI CASTG 1 cut(s) 782
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 4 cut(s) 147, 150, 374, 623
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 829, 857
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 1 cut(s) 782
VpaK11BI GGWCC 2 cut(s) 725, 743
XapI RAATTY 3 cut(s) 629, 646, 787
XceI RCATGY 1 cut(s) 315
XmaJI CCTAGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 4 cut(s) 83, 321, 390, 522
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.