Prupe.2G235800_v2.0.a1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012503
Physical Location & Seq
Reverse (-)
25758586 .. 25761537
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G235800.1

Sequence Viewer

Length: 912 bp
ATGGACTGCCGGGTGTGCATGGCGGGCGGTGACGTGTGGATGAGGGGTCAGATCGGAGGGAATTTCAGCCATGAGAGCGAGCACGACCTCGCTTTAATGGTCACAGATTTCTGGGAAAATGGTAGCGCCGGAGCTGAGTCTTGGTGCAGCAGCGACAGCGATTCTGCTCTTTCCGATCTCGCTCACCTCGCTGATAAAATTCCGTTTTACAAGCGCTCAGTGGCTCAGTACGAAAAGGACTTGACGTCAGTGGTTCATTCTCTTATACTGTCTATCAGTGAGAACGATCTTCATTTTGTGAAGTCAGGTCCATGCAATGCCAGCTGCCTCAAGTTTTCTCTGGTTAAGCTTCTGAGGCTTTCTGGTTATGATGCTGCCGTGTGTGTGGCAAGATGGCAGGGCAGTGGCAAGGTCCCTGGAGGGGATCATGAATATGTTGATGTGGTCAACTTCAACAATTCAGGGAGCTCGGAGCGTCTCATCATTGACCTTGATTTCCGAAGCCACTTTGAAATAGCTAGAGCTGTTCACTCGTATGATAGAATATTGAATTCACTACCAGTTGTTTATGTGGGCTCCTTGACTAGGATGAAACAGTTTCTTCAAGTTATGGTTGAAGCTGCTAGATCTTCCCTGAAGCAGAACTCAATGCCTCTACCTCCATGGAGATCACTTGCTTATTTGCAAGCGAAATGGCAGTCACCCTACCAGAGAGAGTTTAATCTAGATGAAGAGAATGCTAATGGTGCCTACTCTTCTGACCACAAGCAATGTAGTGGACAGTTGAAGATGCTGCAGTCTCTGCTTCAGTCTGAAATTGAGGCAGATAGAATGTTGAAGCCCATAAACAATGATCATATTAGGAGACACAAGCCTGATAGGCGGAGGCACTCTTTGTTATGGACTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

304

Amino Acids

34.23

Weight (kDa)

6.49

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39650 AT2G39650
fragaria_vesca FvH4_7g22510
malus_domestica MD01G1134400.v1.1 MD07G1198800.v1.1 MD07G1198900.v1.1
prunus_persica Prupe.2G235800_v2.0.a1
pyrus_communis pycom01g15510 pycom07g18610
rosa_chinensis RchiOBHm_Chr1g0367191
rosa_laevigata RLG00000027293
rosa_multiflora Rmu_sc0006367.1_g000003
rosa_roxburghii Rroxscaffold_4G00289560
rosa_rugosa Rorug01G0335100
rosa_samantha Rh1AG341900 Rh1BG302200 Rh1CG318600 Rh1DG334700
rosa_wichuraiana Rw1G030380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 746
AciI CCGC 3 cut(s) 23, 27, 883
AclWI GGATC 1 cut(s) 432
AcsI RAATTY 3 cut(s) 61, 198, 550
AcuI CTGAAG 2 cut(s) 656, 791
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 1 cut(s) 230
AfeI AGCGCT 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 421, 585
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 7 cut(s) 454, 512, 550, 605, 617, 787, 838
AhdI GACNNNNNGTC 1 cut(s) 244
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 7 cut(s) 134, 324, 349, 468, 518, 524, 620
AluI AGCT 7 cut(s) 134, 324, 349, 468, 518, 524, 620
Alw21I GWGCWC 2 cut(s) 84, 470
Alw26I GTCTC 3 cut(s) 482, 804, 859
AlwI GGATC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 802
Aor51HI AGCGCT 1 cut(s) 215
ApeKI GCWGC 6 cut(s) 147, 150, 324, 374, 620, 793
ApoI RAATTY 3 cut(s) 61, 198, 550
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AspLEI GCGC 2 cut(s) 128, 216
AspS9I GGNCC 2 cut(s) 308, 412
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 3 cut(s) 41, 176, 693
AvaII GGWCC 2 cut(s) 308, 412
BanI GGYRCC 1 cut(s) 746
BanII GRGCYC 2 cut(s) 470, 578
Bbv12I GWGCWC 2 cut(s) 84, 470
BbvI GCAGC 6 cut(s) 159, 162, 311, 361, 607, 780
BccI CCATC 1 cut(s) 387
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 417
BclI TGATCA 1 cut(s) 853
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 3 cut(s) 482, 804, 859
BfaI CTAG 4 cut(s) 519, 585, 624, 725
BfmI CTRYAG 1 cut(s) 794
BfoI RGCGCY 2 cut(s) 129, 217
BglI GCCNNNNNGGC 1 cut(s) 880
BglII AGATCT 1 cut(s) 626
BisI GCNGC 6 cut(s) 148, 151, 325, 375, 621, 794
BlsI GCNGC 6 cut(s) 149, 152, 326, 376, 622, 795
Bme1390I CCNGG 2 cut(s) 11, 417
Bme18I GGWCC 2 cut(s) 308, 412
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 308, 412
BmiI GGNNCC 3 cut(s) 414, 577, 748
BmrFI CCNGG 2 cut(s) 11, 417
BmsI GCATC 2 cut(s) 361, 780
BpmI CTGGAG 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 415, 662
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 585
Bse1I ACTGG 1 cut(s) 560
Bse3DI GCAATG 2 cut(s) 322, 776
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 415, 662
BseGI GGATG 2 cut(s) 45, 594
BseLI CCNNNNNNNGG 2 cut(s) 421, 585
BseMI GCAATG 2 cut(s) 322, 776
BseMII CTCAG 4 cut(s) 126, 231, 239, 344
BseNI ACTGG 1 cut(s) 560
BseXI GCAGC 6 cut(s) 159, 162, 311, 361, 607, 780
BsgI GTGCAG 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 746
BsiHKAI GWGCWC 2 cut(s) 84, 470
BsiSI CCGG 2 cut(s) 10, 129
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 421, 585
BsmAI GTCTC 3 cut(s) 482, 804, 859
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 742
Bsp1286I GDGCHC 3 cut(s) 84, 470, 578
Bsp143I GATC 7 cut(s) 51, 175, 286, 424, 626, 668, 853
Bsp19I CCATGG 1 cut(s) 662
BspACI CCGC 3 cut(s) 23, 27, 883
BspCNI CTCAG 4 cut(s) 127, 230, 238, 345
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 3 cut(s) 414, 577, 748
BspMAI CTGCAG 1 cut(s) 798
BspPI GGATC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 322, 776
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 2 cut(s) 415, 662
BssMI GATC 7 cut(s) 51, 175, 286, 424, 626, 668, 853
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 3 cut(s) 270, 597, 783
Bst6I CTCTTC 2 cut(s) 726, 760
BstACI GRCGYC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 802
BstC8I GCNNGC 4 cut(s) 25, 80, 322, 687
BstDEI CTNAG 4 cut(s) 135, 217, 225, 353
BstDSI CCRYGG 1 cut(s) 662
BstENI CCTNNNNNAGG 1 cut(s) 583
BstF5I GGATG 2 cut(s) 45, 594
BstH2I RGCGCY 2 cut(s) 129, 217
BstHHI GCGC 2 cut(s) 128, 216
BstKTI GATC 7 cut(s) 54, 178, 289, 427, 629, 671, 856
BstMAI GTCTC 3 cut(s) 482, 804, 859
BstMBI GATC 7 cut(s) 51, 175, 286, 424, 626, 668, 853
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 2 cut(s) 9, 415
BstSFI CTRYAG 1 cut(s) 794
BstV1I GCAGC 6 cut(s) 159, 162, 311, 361, 607, 780
BstX2I RGATCY 1 cut(s) 626
BstYI RGATCY 1 cut(s) 626
BtgI CCRYGG 1 cut(s) 662
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 2 cut(s) 45, 594
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 4 cut(s) 225, 255, 283, 409
Cac8I GCNNGC 4 cut(s) 25, 80, 322, 687
CaiI CAGNNNCTG 1 cut(s) 802
CciI TCATGA 1 cut(s) 427
CfoI GCGC 2 cut(s) 128, 216
Cfr13I GGNCC 2 cut(s) 308, 412
CseI GACGC 1 cut(s) 464
Csp6I GTAC 1 cut(s) 229
CviAII CATG 5 cut(s) 19, 71, 312, 428, 663
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 4 cut(s) 135, 217, 225, 353
DpnI GATC 7 cut(s) 53, 177, 288, 426, 628, 670, 855
DpnII GATC 7 cut(s) 51, 175, 286, 424, 626, 668, 853
DriI GACNNNNNGTC 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 726, 760
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 2 cut(s) 726, 760
EciI GGCGGA 1 cut(s) 898
Ecl136II GAGCTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 662
Eco24I GRGCYC 2 cut(s) 470, 578
Eco47I GGWCC 2 cut(s) 308, 412
Eco47III AGCGCT 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 656, 791
EcoICRI GAGCTC 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 662
EcoT38I GRGCYC 2 cut(s) 470, 578
ErhI CCWWGG 1 cut(s) 662
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 5 cut(s) 22, 74, 315, 431, 666
FaqI GGGAC 1 cut(s) 398
FatI CATG 5 cut(s) 18, 70, 311, 427, 662
FauI CCCGC 1 cut(s) 16
FbaI TGATCA 1 cut(s) 853
Fnu4HI GCNGC 6 cut(s) 148, 151, 325, 375, 621, 794
FokI GGATG 2 cut(s) 52, 601
FriOI GRGCYC 2 cut(s) 470, 578
Fsp4HI GCNGC 6 cut(s) 148, 151, 325, 375, 621, 794
FspBI CTAG 4 cut(s) 519, 585, 624, 725
GlaI GCGC 2 cut(s) 127, 215
GluI GCNGC 6 cut(s) 148, 151, 325, 375, 621, 794
GsuI CTGGAG 1 cut(s) 438
HaeII RGCGCY 2 cut(s) 129, 217
HapII CCGG 2 cut(s) 10, 129
HgaI GACGC 1 cut(s) 464
HhaI GCGC 2 cut(s) 128, 216
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 5 cut(s) 22, 74, 315, 431, 666
Hin6I GCGC 2 cut(s) 126, 214
HinP1I GCGC 2 cut(s) 126, 214
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 137, 161, 904
HpaII CCGG 2 cut(s) 10, 129
HphI GGTGA 3 cut(s) 41, 176, 693
Hpy166II GTNNAC 3 cut(s) 448, 529, 779
Hpy188I TCNGA 8 cut(s) 51, 56, 175, 354, 472, 500, 760, 814
Hpy188III TCNNGA 2 cut(s) 428, 725
Hpy8I GTNNAC 3 cut(s) 448, 529, 779
HpyCH4III ACNGT 3 cut(s) 270, 597, 783
HpyCH4IV ACGT 2 cut(s) 33, 245
HpyCH4V TGCA 5 cut(s) 18, 147, 315, 685, 796
HpyF3I CTNAG 4 cut(s) 135, 217, 225, 353
HpySE526I ACGT 2 cut(s) 33, 245
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 5 cut(s) 22, 74, 315, 431, 666
HspAI GCGC 2 cut(s) 126, 214
Ksp22I TGATCA 1 cut(s) 853
Kzo9I GATC 7 cut(s) 51, 175, 286, 424, 626, 668, 853
LmnI GCTCC 4 cut(s) 131, 465, 472, 581
Lsp1109I GCAGC 6 cut(s) 159, 162, 311, 361, 607, 780
LweI GCATC 2 cut(s) 361, 780
MaeI CTAG 4 cut(s) 519, 585, 624, 725
MaeII ACGT 2 cut(s) 33, 245
MaeIII GTNAC 3 cut(s) 29, 100, 699
MalI GATC 7 cut(s) 53, 177, 288, 426, 628, 670, 855
MboI GATC 7 cut(s) 51, 175, 286, 424, 626, 668, 853
MboII GAAGA 6 cut(s) 281, 593, 621, 743, 747, 799
MflI RGATCY 1 cut(s) 626
MhlI GDGCHC 3 cut(s) 84, 470, 578
MluCI AATT 5 cut(s) 61, 198, 457, 550, 816
MlyI GAGTC 2 cut(s) 146, 898
MseI TTAA 3 cut(s) 95, 345, 720
MslI CAYNNNNRTG 2 cut(s) 432, 534
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 2 cut(s) 10, 129
MspR9I CCNGG 2 cut(s) 11, 417
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 1 cut(s) 417
NciI CCSGG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 662
NdeII GATC 7 cut(s) 51, 175, 286, 424, 626, 668, 853
NlaIII CATG 5 cut(s) 22, 74, 315, 431, 666
NlaIV GGNNCC 3 cut(s) 414, 577, 748
NmuCI GTSAC 3 cut(s) 29, 100, 699
PagI TCATGA 1 cut(s) 427
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 6 cut(s) 149, 152, 326, 376, 622, 795
PleI GAGTC 2 cut(s) 145, 898
PpsI GAGTC 2 cut(s) 145, 898
PpuMI RGGWCCY 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 470
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 3 cut(s) 414, 577, 748
PspPI GGNCC 2 cut(s) 308, 412
PspPPI RGGWCCY 1 cut(s) 412
PstI CTGCAG 1 cut(s) 798
PstNI CAGNNNCTG 1 cut(s) 802
PsuI RGATCY 1 cut(s) 626
PvuII CAGCTG 1 cut(s) 324
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 2 cut(s) 432, 534
SacI GAGCTC 1 cut(s) 470
SaqAI TTAA 3 cut(s) 95, 345, 720
SatI GCNGC 6 cut(s) 148, 151, 325, 375, 621, 794
Sau3AI GATC 7 cut(s) 51, 175, 286, 424, 626, 668, 853
Sau96I GGNCC 2 cut(s) 308, 412
SchI GAGTC 2 cut(s) 146, 898
ScrFI CCNGG 2 cut(s) 11, 417
SduI GDGCHC 3 cut(s) 84, 470, 578
SfaNI GCATC 2 cut(s) 361, 780
SfcI CTRYAG 1 cut(s) 794
SinI GGWCC 2 cut(s) 308, 412
SmiMI CAYNNNNRTG 2 cut(s) 432, 534
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 5 cut(s) 61, 198, 457, 550, 816
SsiI CCGC 3 cut(s) 23, 27, 883
SspI AATATT 1 cut(s) 546
SspMI CTAG 4 cut(s) 519, 585, 624, 725
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 2 cut(s) 9, 415
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 3 cut(s) 270, 597, 783
TaiI ACGT 2 cut(s) 36, 248
TasI AATT 5 cut(s) 61, 198, 457, 550, 816
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 95, 345, 720
Tru9I TTAA 3 cut(s) 95, 345, 720
TscAI CASTG 4 cut(s) 225, 255, 283, 409
TseFI GTSAC 3 cut(s) 29, 100, 699
TseI GCWGC 6 cut(s) 147, 150, 324, 374, 620, 793
Tsp45I GTSAC 3 cut(s) 29, 100, 699
TspDTI ATGAA 5 cut(s) 245, 281, 444, 605, 744
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 4 cut(s) 225, 255, 283, 409
VpaK11BI GGWCC 2 cut(s) 308, 412
XagI CCTNNNNNAGG 1 cut(s) 583
XapI RAATTY 3 cut(s) 61, 198, 550
XbaI TCTAGA 1 cut(s) 724
XspI CTAG 4 cut(s) 519, 585, 624, 725
ZraI GACGTC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.