MD07G1198800.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012503
Physical Location & Seq
Reverse (-)
27716377 .. 27717377
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1198800.v1.1.491

Sequence Viewer

Length: 549 bp
ATGAAACTAAACAATGTGATATTTGTTCCTGTTCCTAGCAAAGATTATCACTCTTACTACTGCCTATTTATAACAGGTTATGACGCTGCCGTGTGCGCGGCTCGGTGGCAAGGCAGTGGCAAGGTCCCCGGAGGGGATCATGAATATATTGATGTGGTGAACTACAATAATTTGGGGAGCTCTGAGCGTATCATAATTGATCTTGATTTCCGGAGCCACTTTGAAATAGCTAGAGCTGTCCAATCGTATGCTAGAATATTGAATTCACTACCAGTTGTTTATGTGGGATCCTTGACTAGGCTGAAACAGTACCTTCAAGTTATGGCTGAAGCTGCTAGATCTTCCCTAAAGCAGAATTCGACGCCTCTTCCTCCGTGGAGATCGCTTGCATATCTGCAAGCGAAATGGCAGTCACCATACCAGAGACAGTTTAATCTAGAAGAACAGAATGTTAATGGTTCCTACAATTTTGACCACAAGAAATGCAGTGCACATTTGAAGATGCTGCAGTCTCTGCTTCAGTCTGAAATTGAAGCAGATAGACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

183

Amino Acids

20.82

Weight (kDa)

8.71

Isoelectric Point (pI)

65.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 24 - 142 7e-52 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39650 AT2G39650
fragaria_vesca FvH4_7g22510
malus_domestica MD01G1134400.v1.1 MD07G1198800.v1.1 MD07G1198900.v1.1
prunus_persica Prupe.2G235800_v2.0.a1
pyrus_communis pycom01g15510 pycom07g18610
rosa_chinensis RchiOBHm_Chr1g0367191
rosa_laevigata RLG00000027293
rosa_multiflora Rmu_sc0006367.1_g000003
rosa_roxburghii Rroxscaffold_4G00289560
rosa_rugosa Rorug01G0335100
rosa_samantha Rh1AG341900 Rh1BG302200 Rh1CG318600 Rh1DG334700
rosa_wichuraiana Rw1G030380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AccII CGCG 1 cut(s) 98
AccIII TCCGGA 1 cut(s) 210
AciI CCGC 1 cut(s) 98
AclWI GGATC 3 cut(s) 144, 282, 295
AcsI RAATTY 2 cut(s) 262, 355
AcuI CTGAAG 2 cut(s) 348, 503
AcyI GRCGYC 1 cut(s) 362
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 133, 297
AgsI TTSAA 5 cut(s) 224, 262, 317, 499, 533
AluBI AGCT 4 cut(s) 180, 230, 236, 332
AluI AGCT 4 cut(s) 180, 230, 236, 332
Alw21I GWGCWC 2 cut(s) 182, 493
Alw26I GTCTC 2 cut(s) 418, 516
Alw44I GTGCAC 1 cut(s) 489
AlwI GGATC 3 cut(s) 144, 282, 295
AlwNI CAGNNNCTG 1 cut(s) 514
Aor13HI TCCGGA 1 cut(s) 210
ApaLI GTGCAC 1 cut(s) 489
ApeKI GCWGC 3 cut(s) 86, 332, 505
ApoI RAATTY 2 cut(s) 262, 355
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 169, 405
AvaII GGWCC 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 493
BamHI GGATCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 182, 493
BbvI GCAGC 3 cut(s) 73, 319, 492
BceAI ACGGC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 418, 516
BfaI CTAG 6 cut(s) 36, 231, 252, 297, 336, 437
BfmI CTRYAG 1 cut(s) 506
BglII AGATCT 1 cut(s) 338
BisI GCNGC 4 cut(s) 87, 99, 333, 506
BlsI GCNGC 4 cut(s) 88, 100, 334, 507
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 4 cut(s) 126, 215, 289, 460
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 127, 374
BsaWI WCCGGW 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 297
Bse1I ACTGG 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 127, 374
BseLI CCNNNNNNNGG 2 cut(s) 133, 297
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 3 cut(s) 73, 319, 492
Bsh1236I CGCG 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 182, 493
BsiSI CCGG 2 cut(s) 129, 211
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 133, 297
BsmAI GTCTC 2 cut(s) 418, 516
BsmFI GGGAC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 182, 493
Bsp13I TCCGGA 1 cut(s) 210
Bsp143I GATC 5 cut(s) 136, 199, 287, 338, 380
BspACI CCGC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 175
BspEI TCCGGA 1 cut(s) 210
BspFNI CGCG 1 cut(s) 98
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 4 cut(s) 126, 215, 289, 460
BspMAI CTGCAG 1 cut(s) 510
BspPI GGATC 3 cut(s) 144, 282, 295
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 127, 374
BssMI GATC 5 cut(s) 136, 199, 287, 338, 380
BssNI GRCGYC 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 309, 429, 546
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 514
BstC8I GCNNGC 2 cut(s) 387, 399
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 374
BstENI CCTNNNNNAGG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 5 cut(s) 139, 202, 290, 341, 383
BstMAI GTCTC 2 cut(s) 418, 516
BstMBI GATC 5 cut(s) 136, 199, 287, 338, 380
BstMWI GCNNNNNNNGC 3 cut(s) 95, 332, 514
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 506
BstSLI GKGCMC 1 cut(s) 493
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 3 cut(s) 73, 319, 492
BstX2I RGATCY 2 cut(s) 287, 338
BstYI RGATCY 2 cut(s) 287, 338
BtgI CCRYGG 1 cut(s) 374
BtsI GCAGTG 2 cut(s) 121, 493
BtsIMutI CAGTG 2 cut(s) 121, 493
Cac8I GCNNGC 2 cut(s) 387, 399
CaiI CAGNNNCTG 1 cut(s) 514
CciI TCATGA 1 cut(s) 139
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 2 cut(s) 92, 370
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 140
CviJI RGCY 8 cut(s) 101, 180, 216, 230, 236, 301, 326, 332
CviKI_1 RGCY 8 cut(s) 101, 180, 216, 230, 236, 301, 326, 332
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 183
DpnI GATC 5 cut(s) 138, 201, 289, 340, 382
DpnII GATC 5 cut(s) 136, 199, 287, 338, 380
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 180
Eco57I CTGAAG 2 cut(s) 348, 503
EcoICRI GAGCTC 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 124
EcoRI GAATTC 2 cut(s) 262, 355
EcoT38I GRGCYC 1 cut(s) 182
FaeI CATG 1 cut(s) 143
FaqI GGGAC 1 cut(s) 110
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 87, 99, 333, 506
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 4 cut(s) 87, 99, 333, 506
FspBI CTAG 6 cut(s) 36, 231, 252, 297, 336, 437
GlaI GCGC 1 cut(s) 97
GluI GCNGC 4 cut(s) 87, 99, 333, 506
HapII CCGG 2 cut(s) 129, 211
HgaI GACGC 2 cut(s) 92, 370
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HpaII CCGG 2 cut(s) 129, 211
HphI GGTGA 2 cut(s) 169, 405
Hpy166II GTNNAC 2 cut(s) 160, 491
Hpy188I TCNGA 2 cut(s) 184, 526
Hpy188III TCNNGA 4 cut(s) 140, 203, 211, 437
Hpy8I GTNNAC 2 cut(s) 160, 491
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 3 cut(s) 309, 429, 546
HpyCH4V TGCA 5 cut(s) 389, 397, 486, 491, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 332, 514
HpyF3I CTNAG 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 96
Kpn2I TCCGGA 1 cut(s) 210
Kzo9I GATC 5 cut(s) 136, 199, 287, 338, 380
LmnI GCTCC 2 cut(s) 177, 213
LpnPI CCDG 6 cut(s) 42, 60, 142, 224, 285, 434
Lsp1109I GCAGC 3 cut(s) 73, 319, 492
LweI GCATC 1 cut(s) 492
MaeI CTAG 6 cut(s) 36, 231, 252, 297, 336, 437
MaeIII GTNAC 1 cut(s) 411
MalI GATC 5 cut(s) 138, 201, 289, 340, 382
MboI GATC 5 cut(s) 136, 199, 287, 338, 380
MboII GAAGA 4 cut(s) 333, 359, 452, 511
MflI RGATCY 2 cut(s) 287, 338
MhlI GDGCHC 2 cut(s) 182, 493
MluCI AATT 6 cut(s) 169, 195, 262, 355, 466, 528
MnlI CCTC 3 cut(s) 125, 375, 381
MroI TCCGGA 1 cut(s) 210
MseI TTAA 2 cut(s) 432, 453
MspI CCGG 2 cut(s) 129, 211
MspR9I CCNGG 1 cut(s) 129
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 95, 332, 514
NciI CCSGG 1 cut(s) 129
NdeII GATC 5 cut(s) 136, 199, 287, 338, 380
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 4 cut(s) 126, 215, 289, 460
NmuCI GTSAC 1 cut(s) 411
PagI TCATGA 1 cut(s) 139
PkrI GCNGC 4 cut(s) 88, 100, 334, 507
PpuMI RGGWCCY 1 cut(s) 124
PsiI TTATAA 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 124
PspN4I GGNNCC 4 cut(s) 126, 215, 289, 460
PspPI GGNCC 1 cut(s) 124
PspPPI RGGWCCY 1 cut(s) 124
PstI CTGCAG 1 cut(s) 510
PstNI CAGNNNCTG 1 cut(s) 514
PsuI RGATCY 2 cut(s) 287, 338
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SacI GAGCTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 432, 453
SatI GCNGC 4 cut(s) 87, 99, 333, 506
Sau3AI GATC 5 cut(s) 136, 199, 287, 338, 380
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 2 cut(s) 182, 493
SetI ASST 7 cut(s) 79, 126, 182, 232, 238, 315, 334
SfaNI GCATC 1 cut(s) 492
SfcI CTRYAG 1 cut(s) 506
SinI GGWCC 1 cut(s) 124
Sse9I AATT 6 cut(s) 169, 195, 262, 355, 466, 528
SsiI CCGC 1 cut(s) 98
SspI AATATT 1 cut(s) 258
SspMI CTAG 6 cut(s) 36, 231, 252, 297, 336, 437
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 3 cut(s) 309, 429, 546
TaqI TCGA 1 cut(s) 359
TasI AATT 6 cut(s) 169, 195, 262, 355, 466, 528
TauI GCSGC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 432, 453
Tru9I TTAA 2 cut(s) 432, 453
TscAI CASTG 2 cut(s) 121, 493
TseFI GTSAC 1 cut(s) 411
TseI GCWGC 3 cut(s) 86, 332, 505
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 2 cut(s) 17, 156
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 2 cut(s) 121, 493
VneI GTGCAC 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 295
XapI RAATTY 2 cut(s) 262, 355
XbaI TCTAGA 1 cut(s) 436
XspI CTAG 6 cut(s) 36, 231, 252, 297, 336, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.