Rw1G030380

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012503
Physical Location & Seq
Reverse (-)
58316121 .. 58318035
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030380.1

Sequence Viewer

Length: 915 bp
ATGGATTGCCGTGTGTGCATGGCCGGAGGAGACGTTTGGATGAGAGGTCAGATCGGAGGGGCTCTGAGCCAGGAGAGCGAGCACGACCTGGCTTCGATGGTCAGCGATTTCTTGGAGAACGGTAGCGCCGGCGCCGGCGACTCTTGGTGTAGCAGCGATAGCGACTCCGCTCATCTCTCCGATCTCGCTCACCTCGCTGATAAGATTGCGTGTTACAAGTGCTCGGTGGCTCAGTACGAAAATGATTTGGCATCAGTGGTTCATTCTCTTATACTATCAATCAGTGAAAACAATCTTCATCTTGTCAAGACAGGTCCGTGCAATGCCAGCTGCCTCAAGTTTTCTCTAGTAAAGCTTCTCAGGCTTTCTGGTTACGATGCTGCTGTGTGTTCGGCTAGATGGCAGGGCAGTGGAAAGGTCCCTGGAGGGGATCATGAATATATAGATGTGGTCAACCACAGCAATACAGGGAGTTCTGAACGTCTCATCATCGACATTGATTTTCGAAGCCACTTTGAAATAGCTAGAGCTGTTCAATCATATGACCGGATATTGAATTCGCTGCCAGTTGTTTATGTGGGCTCCTTGACTAGGTTGAAACAGTTCCTTCAAGTTATGGTTGAAGCAGCTAGATCTTCCCTCAAGCAGAACTCAATGCCTCTTCCTCCATGGAGATCACTTGCTTATTTGCAAGCAAAATGGCAGTCACCTTATCAGAGACAGTTCGATCTAGATGAACATAATGCCAACAGTGTCTTCTCTTTTGACCACAAACAATGCAGTGGACATTTGAAGATGCTGCAGTCCCAGCTTCACTCTGAAATAGAAGCAAATAGACTGTTGAAGCCCAAGAGCAATGATAATATCCGGAGACACAAGTCTGCGCGGAGTTATTCTTTGTTCCGGGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

304

Amino Acids

33.76

Weight (kDa)

6.88

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 32 - 240 2.5e-65 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39650 AT2G39650
fragaria_vesca FvH4_7g22510
malus_domestica MD01G1134400.v1.1 MD07G1198800.v1.1 MD07G1198900.v1.1
prunus_persica Prupe.2G235800_v2.0.a1
pyrus_communis pycom01g15510 pycom07g18610
rosa_chinensis RchiOBHm_Chr1g0367191
rosa_laevigata RLG00000027293
rosa_multiflora Rmu_sc0006367.1_g000003
rosa_roxburghii Rroxscaffold_4G00289560
rosa_rugosa Rorug01G0335100
rosa_samantha Rh1AG341900 Rh1BG302200 Rh1CG318600 Rh1DG334700
rosa_wichuraiana Rw1G030380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 170
AccII CGCG 1 cut(s) 886
AccIII TCCGGA 1 cut(s) 867
AciI CCGC 2 cut(s) 168, 886
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 1 cut(s) 556
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 427, 591
AgsI TTSAA 8 cut(s) 518, 536, 556, 598, 611, 623, 793, 844
AjnI CCWGG 3 cut(s) 69, 87, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AluBI AGCT 6 cut(s) 330, 355, 524, 530, 629, 811
AluI AGCT 6 cut(s) 330, 355, 524, 530, 629, 811
Alw21I GWGCWC 2 cut(s) 84, 224
Alw26I GTCTC 4 cut(s) 24, 488, 712, 865
AlwI GGATC 1 cut(s) 438
Aor13HI TCCGGA 1 cut(s) 867
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 6 cut(s) 153, 330, 380, 562, 626, 799
ApoI RAATTY 1 cut(s) 556
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
Asp700I GAANNNNTTC 1 cut(s) 602
AspLEI GCGC 3 cut(s) 128, 134, 886
AspS9I GGNCC 2 cut(s) 314, 418
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 2 cut(s) 182, 699
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 2 cut(s) 314, 418
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 3 cut(s) 64, 584, 910
BbsI GAAGAC 1 cut(s) 748
Bbv12I GWGCWC 2 cut(s) 84, 224
BbvI GCAGC 6 cut(s) 165, 317, 367, 549, 638, 786
BccI CCATC 2 cut(s) 91, 393
BciT130I CCWGG 3 cut(s) 71, 89, 423
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 4 cut(s) 24, 488, 712, 865
BfaI CTAG 6 cut(s) 347, 396, 525, 591, 630, 731
BfmI CTRYAG 1 cut(s) 800
BfoI RGCGCY 2 cut(s) 129, 135
BglII AGATCT 1 cut(s) 632
BisI GCNGC 6 cut(s) 154, 331, 381, 563, 627, 800
BlsI GCNGC 6 cut(s) 155, 332, 382, 564, 628, 801
Bme1390I CCNGG 4 cut(s) 71, 89, 423, 905
Bme18I GGWCC 2 cut(s) 314, 418
BmgT120I GGNCC 2 cut(s) 314, 418
BmiI GGNNCC 3 cut(s) 133, 420, 583
BmrFI CCNGG 4 cut(s) 71, 89, 423, 905
BmsI GCATC 3 cut(s) 260, 367, 786
BoxI GACNNNNGTC 1 cut(s) 877
BpiI GAAGAC 1 cut(s) 748
BpmI CTGGAG 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 505
BpuEI CTTGAG 2 cut(s) 320, 626
BpuMI CCSGG 1 cut(s) 905
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 421, 668
BsaWI WCCGGW 2 cut(s) 546, 867
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 591
Bse118I RCCGGY 2 cut(s) 128, 134
Bse1I ACTGG 1 cut(s) 566
Bse3DI GCAATG 2 cut(s) 328, 862
BseAI TCCGGA 1 cut(s) 867
BseBI CCWGG 3 cut(s) 71, 89, 423
BseDI CCNNGG 2 cut(s) 421, 668
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 427, 591
BseMI GCAATG 2 cut(s) 328, 862
BseMII CTCAG 3 cut(s) 56, 245, 373
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 6 cut(s) 165, 317, 367, 549, 638, 786
BseYI CCCAGC 1 cut(s) 807
Bsh1236I CGCG 1 cut(s) 886
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 2 cut(s) 84, 224
BsiSI CCGG 6 cut(s) 24, 129, 135, 547, 868, 904
BslFI GGGAC 2 cut(s) 404, 790
BslI CCNNNNNNNGG 2 cut(s) 427, 591
BsmAI GTCTC 4 cut(s) 24, 488, 712, 865
BsmBI CGTCTC 2 cut(s) 24, 488
BsmFI GGGAC 2 cut(s) 404, 790
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 5 cut(s) 64, 84, 224, 584, 910
Bsp13I TCCGGA 1 cut(s) 867
Bsp143I GATC 6 cut(s) 51, 181, 430, 632, 674, 727
Bsp19I CCATGG 1 cut(s) 668
BspACI CCGC 2 cut(s) 168, 886
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 3 cut(s) 57, 244, 372
BspEI TCCGGA 1 cut(s) 867
BspFNI CGCG 1 cut(s) 886
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 133, 420, 583
BspMAI CTGCAG 1 cut(s) 804
BspPI GGATC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 328, 862
BsrFI RCCGGY 2 cut(s) 128, 134
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 2 cut(s) 128, 134
BssECI CCNNGG 2 cut(s) 421, 668
BssMI GATC 6 cut(s) 51, 181, 430, 632, 674, 727
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 668
Bst2UI CCWGG 3 cut(s) 71, 89, 423
Bst4CI ACNGT 5 cut(s) 122, 603, 723, 752, 840
Bst6I CTCTTC 1 cut(s) 666
BstACI GRCGYC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 5 cut(s) 80, 130, 136, 328, 693
BstDEI CTNAG 3 cut(s) 65, 231, 359
BstDSI CCRYGG 1 cut(s) 668
BstENI CCTNNNNNAGG 1 cut(s) 589
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 886
BstH2I RGCGCY 2 cut(s) 129, 135
BstHHI GCGC 3 cut(s) 128, 134, 886
BstKTI GATC 6 cut(s) 54, 184, 433, 635, 677, 730
BstMAI GTCTC 4 cut(s) 24, 488, 712, 865
BstMBI GATC 6 cut(s) 51, 181, 430, 632, 674, 727
BstMWI GCNNNNNNNGC 7 cut(s) 15, 75, 159, 194, 327, 361, 808
BstNI CCWGG 3 cut(s) 71, 89, 423
BstPAI GACNNNNGTC 1 cut(s) 877
BstSCI CCNGG 4 cut(s) 69, 87, 421, 903
BstSFI CTRYAG 1 cut(s) 800
BstUI CGCG 1 cut(s) 886
BstV1I GCAGC 6 cut(s) 165, 317, 367, 549, 638, 786
BstV2I GAAGAC 1 cut(s) 748
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 668
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 2 cut(s) 415, 787
BtsIMutI CAGTG 5 cut(s) 261, 289, 415, 757, 787
Cac8I GCNNGC 5 cut(s) 80, 130, 136, 328, 693
CciI TCATGA 1 cut(s) 433
CfoI GCGC 3 cut(s) 128, 134, 886
Cfr10I RCCGGY 2 cut(s) 128, 134
Cfr13I GGNCC 2 cut(s) 314, 418
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 19, 434, 669
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 3 cut(s) 65, 231, 359
DinI GGCGCC 1 cut(s) 133
DpnI GATC 6 cut(s) 53, 183, 432, 634, 676, 729
DpnII GATC 6 cut(s) 51, 181, 430, 632, 674, 727
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco130I CCWWGG 1 cut(s) 668
Eco24I GRGCYC 3 cut(s) 64, 584, 910
Eco47I GGWCC 2 cut(s) 314, 418
EcoNI CCTNNNNNAGG 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 3 cut(s) 69, 87, 421
EcoT14I CCWWGG 1 cut(s) 668
EcoT38I GRGCYC 3 cut(s) 64, 584, 910
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 668
Esp3I CGTCTC 2 cut(s) 24, 488
FaeI CATG 3 cut(s) 22, 437, 672
FaqI GGGAC 2 cut(s) 404, 790
FatI CATG 3 cut(s) 18, 433, 668
FauNDI CATATG 1 cut(s) 541
Fnu4HI GCNGC 6 cut(s) 154, 331, 381, 563, 627, 800
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 3 cut(s) 64, 584, 910
Fsp4HI GCNGC 6 cut(s) 154, 331, 381, 563, 627, 800
FspBI CTAG 6 cut(s) 347, 396, 525, 591, 630, 731
GlaI GCGC 3 cut(s) 127, 133, 885
GluI GCNGC 6 cut(s) 154, 331, 381, 563, 627, 800
GsaI CCCAGC 1 cut(s) 811
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 2 cut(s) 129, 135
HaeIII GGCC 1 cut(s) 23
HapII CCGG 6 cut(s) 24, 129, 135, 547, 868, 904
HhaI GCGC 3 cut(s) 128, 134, 886
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 22, 437, 672
Hin6I GCGC 3 cut(s) 126, 132, 884
HinP1I GCGC 3 cut(s) 126, 132, 884
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 140, 164
HpaII CCGG 6 cut(s) 24, 129, 135, 547, 868, 904
HphI GGTGA 2 cut(s) 182, 699
Hpy166II GTNNAC 2 cut(s) 454, 785
Hpy188I TCNGA 7 cut(s) 51, 56, 66, 181, 478, 717, 820
Hpy188III TCNNGA 4 cut(s) 307, 434, 731, 868
Hpy8I GTNNAC 2 cut(s) 454, 785
HpyAV CCTTC 1 cut(s) 617
HpyCH4III ACNGT 5 cut(s) 122, 603, 723, 752, 840
HpyCH4IV ACGT 2 cut(s) 33, 481
HpyCH4V TGCA 5 cut(s) 18, 321, 691, 780, 802
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 75, 159, 194, 327, 361, 808
HpyF3I CTNAG 3 cut(s) 65, 231, 359
HpySE526I ACGT 2 cut(s) 33, 481
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 22, 437, 672
HspAI GCGC 3 cut(s) 126, 132, 884
KasI GGCGCC 1 cut(s) 131
Kpn2I TCCGGA 1 cut(s) 867
KroI GCCGGC 2 cut(s) 128, 134
KroNI GCCGGC 2 cut(s) 130, 136
Kzo9I GATC 6 cut(s) 51, 181, 430, 632, 674, 727
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 6 cut(s) 165, 317, 367, 549, 638, 786
LweI GCATC 3 cut(s) 260, 367, 786
MaeI CTAG 6 cut(s) 347, 396, 525, 591, 630, 731
MaeII ACGT 2 cut(s) 33, 481
MaeIII GTNAC 3 cut(s) 212, 371, 705
MalI GATC 6 cut(s) 53, 183, 432, 634, 676, 729
MbiI CCGCTC 1 cut(s) 170
MboI GATC 6 cut(s) 51, 181, 430, 632, 674, 727
MboII GAAGA 5 cut(s) 287, 627, 653, 748, 805
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 5 cut(s) 64, 84, 224, 584, 910
MluCI AATT 1 cut(s) 556
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 2 cut(s) 134, 158
MnlI CCTC 9 cut(s) 20, 38, 50, 203, 344, 419, 650, 669, 675
MreI CGCCGGCG 2 cut(s) 128, 134
MroI TCCGGA 1 cut(s) 867
MroNI GCCGGC 2 cut(s) 128, 134
MroXI GAANNNNTTC 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 6 cut(s) 24, 129, 135, 547, 868, 904
MspR9I CCNGG 4 cut(s) 71, 89, 423, 905
MvaI CCWGG 3 cut(s) 71, 89, 423
MvnI CGCG 1 cut(s) 886
MwoI GCNNNNNNNGC 7 cut(s) 15, 75, 159, 194, 327, 361, 808
NaeI GCCGGC 2 cut(s) 130, 136
NarI GGCGCC 1 cut(s) 132
NciI CCSGG 1 cut(s) 905
NcoI CCATGG 1 cut(s) 668
NdeI CATATG 1 cut(s) 541
NdeII GATC 6 cut(s) 51, 181, 430, 632, 674, 727
NgoMIV GCCGGC 2 cut(s) 128, 134
NlaIII CATG 3 cut(s) 22, 437, 672
NlaIV GGNNCC 3 cut(s) 133, 420, 583
NmuCI GTSAC 1 cut(s) 705
NspV TTCGAA 1 cut(s) 505
PagI TCATGA 1 cut(s) 433
PdiI GCCGGC 2 cut(s) 130, 136
PdmI GAANNNNTTC 1 cut(s) 602
PkrI GCNGC 6 cut(s) 155, 332, 382, 564, 628, 801
PleI GAGTC 2 cut(s) 134, 158
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 2 cut(s) 134, 158
PpuMI RGGWCCY 1 cut(s) 418
PshAI GACNNNNGTC 1 cut(s) 877
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 3 cut(s) 69, 87, 421
PspFI CCCAGC 1 cut(s) 807
PspGI CCWGG 3 cut(s) 69, 87, 421
PspN4I GGNNCC 3 cut(s) 133, 420, 583
PspPI GGNCC 2 cut(s) 314, 418
PspPPI RGGWCCY 1 cut(s) 418
PstI CTGCAG 1 cut(s) 804
PsuI RGATCY 1 cut(s) 632
PvuII CAGCTG 1 cut(s) 330
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SatI GCNGC 6 cut(s) 154, 331, 381, 563, 627, 800
Sau3AI GATC 6 cut(s) 51, 181, 430, 632, 674, 727
Sau96I GGNCC 2 cut(s) 314, 418
SchI GAGTC 2 cut(s) 134, 158
ScrFI CCNGG 4 cut(s) 71, 89, 423, 905
SduI GDGCHC 5 cut(s) 64, 84, 224, 584, 910
SfaNI GCATC 3 cut(s) 260, 367, 786
SfcI CTRYAG 1 cut(s) 800
SfoI GGCGCC 1 cut(s) 133
SfuI TTCGAA 1 cut(s) 505
SgrAI CRCCGGYG 2 cut(s) 128, 134
SinI GGWCC 2 cut(s) 314, 418
SmlI CTYRAG 2 cut(s) 335, 641
SmoI CTYRAG 2 cut(s) 335, 641
Sse9I AATT 1 cut(s) 556
SsiI CCGC 2 cut(s) 168, 886
SspDI GGCGCC 1 cut(s) 131
SspMI CTAG 6 cut(s) 347, 396, 525, 591, 630, 731
StyD4I CCNGG 4 cut(s) 69, 87, 421, 903
StyI CCWWGG 1 cut(s) 668
TaaI ACNGT 5 cut(s) 122, 603, 723, 752, 840
TaiI ACGT 2 cut(s) 36, 484
TaqI TCGA 4 cut(s) 95, 492, 505, 726
TasI AATT 1 cut(s) 556
TscAI CASTG 5 cut(s) 261, 289, 415, 757, 787
TseFI GTSAC 1 cut(s) 705
TseI GCWGC 6 cut(s) 153, 330, 380, 562, 626, 799
Tsp45I GTSAC 1 cut(s) 705
TspDTI ATGAA 4 cut(s) 251, 287, 450, 750
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 5 cut(s) 261, 289, 415, 757, 787
VpaK11BI GGWCC 2 cut(s) 314, 418
XagI CCTNNNNNAGG 1 cut(s) 589
XapI RAATTY 1 cut(s) 556
XbaI TCTAGA 1 cut(s) 730
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 6 cut(s) 347, 396, 525, 591, 630, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.