Rroxscaffold_4G00289560

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012503
Physical Location & Seq
Forward (+)
10157762 .. 10160529
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289560.1

Sequence Viewer

Length: 792 bp
ATGGATTGCCGTGTGTGCATGGCCGGAGGAGACGTTTGGATGAGAGGTCAGATCGGAGGGGCTCTGAGCCAGGAGAGCGAGCACGACCTGGCTTCGATGGTCAGCGATTTCTTGGAGAACGGTAGTGCCGGCGCCGGCGACTCTTGGTGTAGCAGCGATAGCGACTCCGCTCATCTCTCCGATCTCGCTCACCTCGCTGATAAGATTGCGTGTTACAAGTGCTCGGTGGCTCAGTACGAAAATGATTTGGCATCAGTGGTTCATTCTCTTATTCTATCAATCAGTGAAAACAATCTTCATCTTGTCAAGTCAGGTCCGTGCAATGCCAGCTGCCTCAAGTTTTCTCTAGTAAAGCTTCTCAGGCTTTCTGGTTACGATGCTGCTGTGTGTTCGGCTAGATGGCAGGGCAGTGGAAAGGTCCCTGGAGGGGATCATGAATATATAGATGTGGTCAACCACAGCAATACAGGGAGTTCTGAACGTCTCATCATTGACATTGATTTTCGAAGCCACTTTGAAATAGCTAGAGCTGTTCAATCATATGATAGGATATTGAGTTCGCTGCCAGTTGTTTATGTGGGCTCCTTGACTAGGTTGAAACAGTTCCTTCAAGTTATGGTTGATGCAGCTAGATCTTCCCTCAAGCAGAACTCAATGCCTCTTCCTCCGTGGAGATCACTTGCTTATTTGCAAGCAAAATGGCAGTCGCCTTATCAGAGACAGTTTGATCTGGATGAACATAATGGCAACAGTGTCTCTCTTTTGACCACAAACAATGCAGTGGACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

263

Amino Acids

28.73

Weight (kDa)

5.52

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 32 - 240 1.4e-65 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39650 AT2G39650
fragaria_vesca FvH4_7g22510
malus_domestica MD01G1134400.v1.1 MD07G1198800.v1.1 MD07G1198900.v1.1
prunus_persica Prupe.2G235800_v2.0.a1
pyrus_communis pycom01g15510 pycom07g18610
rosa_chinensis RchiOBHm_Chr1g0367191
rosa_laevigata RLG00000027293
rosa_multiflora Rmu_sc0006367.1_g000003
rosa_roxburghii Rroxscaffold_4G00289560
rosa_rugosa Rorug01G0335100
rosa_samantha Rh1AG341900 Rh1BG302200 Rh1CG318600 Rh1DG334700
rosa_wichuraiana Rw1G030380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 427, 591
AgsI TTSAA 4 cut(s) 518, 536, 598, 611
AjnI CCWGG 3 cut(s) 69, 87, 421
AloI GAACNNNNNNTCC 2 cut(s) 541, 573
AluBI AGCT 5 cut(s) 330, 355, 524, 530, 629
AluI AGCT 5 cut(s) 330, 355, 524, 530, 629
Alw21I GWGCWC 2 cut(s) 84, 224
Alw26I GTCTC 4 cut(s) 24, 488, 712, 760
AlwI GGATC 1 cut(s) 438
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 5 cut(s) 153, 330, 380, 562, 626
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
Asp700I GAANNNNTTC 1 cut(s) 602
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 314, 418
AsuHPI GGTGA 1 cut(s) 182
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 2 cut(s) 314, 418
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 2 cut(s) 64, 584
Bbv12I GWGCWC 2 cut(s) 84, 224
BbvI GCAGC 5 cut(s) 165, 317, 367, 549, 638
BccI CCATC 2 cut(s) 91, 393
BciT130I CCWGG 3 cut(s) 71, 89, 423
BcoDI GTCTC 4 cut(s) 24, 488, 712, 760
BfaI CTAG 5 cut(s) 347, 396, 525, 591, 630
BfoI RGCGCY 1 cut(s) 135
BglII AGATCT 1 cut(s) 632
BisI GCNGC 5 cut(s) 154, 331, 381, 563, 627
BlsI GCNGC 5 cut(s) 155, 332, 382, 564, 628
Bme1390I CCNGG 3 cut(s) 71, 89, 423
Bme18I GGWCC 2 cut(s) 314, 418
BmgT120I GGNCC 2 cut(s) 314, 418
BmiI GGNNCC 3 cut(s) 133, 420, 583
BmrFI CCNGG 3 cut(s) 71, 89, 423
BmsI GCATC 3 cut(s) 260, 367, 613
BpmI CTGGAG 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 505
BpuEI CTTGAG 2 cut(s) 320, 626
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 421, 668
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 591
Bse118I RCCGGY 2 cut(s) 128, 134
Bse1I ACTGG 1 cut(s) 566
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 3 cut(s) 71, 89, 423
BseDI CCNNGG 2 cut(s) 421, 668
BseGI GGATG 2 cut(s) 45, 739
BseLI CCNNNNNNNGG 2 cut(s) 427, 591
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 3 cut(s) 56, 245, 373
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 5 cut(s) 165, 317, 367, 549, 638
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 2 cut(s) 84, 224
BsiSI CCGG 3 cut(s) 24, 129, 135
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 2 cut(s) 427, 591
BsmAI GTCTC 4 cut(s) 24, 488, 712, 760
BsmBI CGTCTC 2 cut(s) 24, 488
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 4 cut(s) 64, 84, 224, 584
Bsp143I GATC 6 cut(s) 51, 181, 430, 632, 674, 727
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 3 cut(s) 57, 244, 372
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 133, 420, 583
BspPI GGATC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 328
BsrFI RCCGGY 2 cut(s) 128, 134
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 2 cut(s) 128, 134
BssECI CCNNGG 2 cut(s) 421, 668
BssMI GATC 6 cut(s) 51, 181, 430, 632, 674, 727
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 3 cut(s) 71, 89, 423
Bst4CI ACNGT 4 cut(s) 122, 603, 723, 752
Bst6I CTCTTC 1 cut(s) 666
BstACI GRCGYC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 5 cut(s) 80, 130, 136, 328, 693
BstDEI CTNAG 3 cut(s) 65, 231, 359
BstDSI CCRYGG 1 cut(s) 668
BstENI CCTNNNNNAGG 1 cut(s) 589
BstF5I GGATG 2 cut(s) 45, 739
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 6 cut(s) 54, 184, 433, 635, 677, 730
BstMAI GTCTC 4 cut(s) 24, 488, 712, 760
BstMBI GATC 6 cut(s) 51, 181, 430, 632, 674, 727
BstMWI GCNNNNNNNGC 6 cut(s) 15, 75, 159, 194, 327, 361
BstNI CCWGG 3 cut(s) 71, 89, 423
BstSCI CCNGG 3 cut(s) 69, 87, 421
BstV1I GCAGC 5 cut(s) 165, 317, 367, 549, 638
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 668
BtsCI GGATG 2 cut(s) 45, 739
BtsI GCAGTG 2 cut(s) 415, 786
BtsIMutI CAGTG 5 cut(s) 261, 289, 415, 757, 786
Cac8I GCNNGC 5 cut(s) 80, 130, 136, 328, 693
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 2 cut(s) 128, 134
Cfr13I GGNCC 2 cut(s) 314, 418
Csp6I GTAC 1 cut(s) 235
CviAII CATG 2 cut(s) 19, 434
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 3 cut(s) 65, 231, 359
DinI GGCGCC 1 cut(s) 133
DpnI GATC 6 cut(s) 53, 183, 432, 634, 676, 729
DpnII GATC 6 cut(s) 51, 181, 430, 632, 674, 727
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco24I GRGCYC 2 cut(s) 64, 584
Eco47I GGWCC 2 cut(s) 314, 418
EcoNI CCTNNNNNAGG 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 418
EcoRII CCWGG 3 cut(s) 69, 87, 421
EcoT38I GRGCYC 2 cut(s) 64, 584
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
Esp3I CGTCTC 2 cut(s) 24, 488
FaeI CATG 2 cut(s) 22, 437
FaiI YATR 9 cut(s) 20, 435, 441, 443, 541, 543, 576, 617, 741
FaqI GGGAC 1 cut(s) 404
FatI CATG 2 cut(s) 18, 433
FauNDI CATATG 1 cut(s) 541
Fnu4HI GCNGC 5 cut(s) 154, 331, 381, 563, 627
FokI GGATG 2 cut(s) 52, 746
FriOI GRGCYC 2 cut(s) 64, 584
Fsp4HI GCNGC 5 cut(s) 154, 331, 381, 563, 627
FspBI CTAG 5 cut(s) 347, 396, 525, 591, 630
GlaI GCGC 1 cut(s) 133
GluI GCNGC 5 cut(s) 154, 331, 381, 563, 627
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 23
HapII CCGG 3 cut(s) 24, 129, 135
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 22, 437
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 140, 164
HpaII CCGG 3 cut(s) 24, 129, 135
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 454, 784
Hpy188I TCNGA 6 cut(s) 51, 56, 66, 181, 478, 717
Hpy188III TCNNGA 2 cut(s) 434, 731
Hpy8I GTNNAC 2 cut(s) 454, 784
HpyAV CCTTC 1 cut(s) 617
HpyCH4III ACNGT 4 cut(s) 122, 603, 723, 752
HpyCH4IV ACGT 2 cut(s) 33, 481
HpyCH4V TGCA 5 cut(s) 18, 321, 626, 691, 779
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 75, 159, 194, 327, 361
HpyF3I CTNAG 3 cut(s) 65, 231, 359
HpySE526I ACGT 2 cut(s) 33, 481
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 22, 437
HspAI GCGC 1 cut(s) 132
KasI GGCGCC 1 cut(s) 131
KroI GCCGGC 2 cut(s) 128, 134
KroNI GCCGGC 2 cut(s) 130, 136
Kzo9I GATC 6 cut(s) 51, 181, 430, 632, 674, 727
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 5 cut(s) 165, 317, 367, 549, 638
LweI GCATC 3 cut(s) 260, 367, 613
MaeI CTAG 5 cut(s) 347, 396, 525, 591, 630
MaeII ACGT 2 cut(s) 33, 481
MaeIII GTNAC 2 cut(s) 212, 371
MalI GATC 6 cut(s) 53, 183, 432, 634, 676, 729
MbiI CCGCTC 1 cut(s) 170
MboI GATC 6 cut(s) 51, 181, 430, 632, 674, 727
MboII GAAGA 3 cut(s) 287, 627, 653
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 4 cut(s) 64, 84, 224, 584
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 2 cut(s) 134, 158
MnlI CCTC 9 cut(s) 20, 38, 50, 203, 344, 419, 650, 669, 675
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 2 cut(s) 128, 134
MroXI GAANNNNTTC 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 3 cut(s) 24, 129, 135
MspR9I CCNGG 3 cut(s) 71, 89, 423
MvaI CCWGG 3 cut(s) 71, 89, 423
MwoI GCNNNNNNNGC 6 cut(s) 15, 75, 159, 194, 327, 361
NaeI GCCGGC 2 cut(s) 130, 136
NarI GGCGCC 1 cut(s) 132
NdeI CATATG 1 cut(s) 541
NdeII GATC 6 cut(s) 51, 181, 430, 632, 674, 727
NgoMIV GCCGGC 2 cut(s) 128, 134
NlaIII CATG 2 cut(s) 22, 437
NlaIV GGNNCC 3 cut(s) 133, 420, 583
NspV TTCGAA 1 cut(s) 505
PagI TCATGA 1 cut(s) 433
PdiI GCCGGC 2 cut(s) 130, 136
PdmI GAANNNNTTC 1 cut(s) 602
PkrI GCNGC 5 cut(s) 155, 332, 382, 564, 628
PleI GAGTC 2 cut(s) 134, 158
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 2 cut(s) 134, 158
PpuMI RGGWCCY 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 3 cut(s) 69, 87, 421
PspGI CCWGG 3 cut(s) 69, 87, 421
PspN4I GGNNCC 3 cut(s) 133, 420, 583
PspPI GGNCC 2 cut(s) 314, 418
PspPPI RGGWCCY 1 cut(s) 418
PsuI RGATCY 1 cut(s) 632
PvuII CAGCTG 1 cut(s) 330
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SatI GCNGC 5 cut(s) 154, 331, 381, 563, 627
Sau3AI GATC 6 cut(s) 51, 181, 430, 632, 674, 727
Sau96I GGNCC 2 cut(s) 314, 418
SchI GAGTC 2 cut(s) 134, 158
ScrFI CCNGG 3 cut(s) 71, 89, 423
SduI GDGCHC 4 cut(s) 64, 84, 224, 584
SfaNI GCATC 3 cut(s) 260, 367, 613
SfoI GGCGCC 1 cut(s) 133
SfuI TTCGAA 1 cut(s) 505
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 2 cut(s) 314, 418
SmlI CTYRAG 2 cut(s) 335, 641
SmoI CTYRAG 2 cut(s) 335, 641
SsiI CCGC 1 cut(s) 168
SspDI GGCGCC 1 cut(s) 131
SspMI CTAG 5 cut(s) 347, 396, 525, 591, 630
StyD4I CCNGG 3 cut(s) 69, 87, 421
TaaI ACNGT 4 cut(s) 122, 603, 723, 752
TaiI ACGT 2 cut(s) 36, 484
TaqI TCGA 2 cut(s) 95, 505
TscAI CASTG 5 cut(s) 261, 289, 415, 757, 786
TseI GCWGC 5 cut(s) 153, 330, 380, 562, 626
TspDTI ATGAA 4 cut(s) 251, 287, 450, 750
TspGWI ACGGA 2 cut(s) 306, 657
TspRI CASTG 5 cut(s) 261, 289, 415, 757, 786
VpaK11BI GGWCC 2 cut(s) 314, 418
XagI CCTNNNNNAGG 1 cut(s) 589
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 5 cut(s) 347, 396, 525, 591, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.