pycom01g15510

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012503
Physical Location & Seq
Reverse (-)
15361593 .. 15363371
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g15510.2

Sequence Viewer

Length: 915 bp
ATGGACTGCCGGGTGGTGTGCATGGCGGGCGGCGACGTTTGGATGAGGGGTCAGATCGGAGGGGGTTTAAGCCACGAGAGCGAGCACGACCTCGCTCTCATGGTCACTGATTTTTGGGAAAACGGTAGCGTCGGAGCTGAGTCTTGGTGTAGCAGCGAGAGCGATTCTGCTCTCTCCGATCTCGGTCACCTCGCCGACAAAATTCCGTTTTTCAAGCGTTCAGTGGCTCAGTACGAAAACGATTTGACATCGGTGGTTCATTCTCTGATACTGTCCATCAGCGAGAACGATCTTAATTTTGTGAAGTCAGGTCAGTGCAATTCCAGCTGCATCAAGTTTGATCTGGTTAAGCTTCTGAGGCTGTCTGGTTATGATGCTGCCGTGTGCGCGGCTCGGTGGCAGGGCACTGGCAAGGTCCCTGGAGGGGACCATGAATATATTGATGTGGTGAACTACAACAATTTGGGGAGCTCTGAGCGTCTCATCATTGACCTTGATTTCAGAAGCCACTTTGAAATAGCTAGAGCGGTTCAATCGTATGATAGAATATTGAACTCACTACCAGTTGTTTATGTGGGCTCCTTGCCTAGGCTGAAGCAGTATCTTCAAGTTATGGCCGAAGCTGCTAGATCTTCCCTCGAGCAGAACTCGATGCCTCTACCTCCGTGGAGATCACTCGCTTATCTGCAAGCGAAATGGGAATCTCCATACCAGAGACAGTTTAATATAGACGAACAGAATGTTAACGGTTCCTACAATTTTGACCACAAGCAATGCAGTGCGCATTTGAAGATGCTGCAGTCTCTGCTTCAGTCTGAAATTGAAGCAGATAGGCTGTTGAAGCAGATAAACAACGATCACATTAGGAAGCACAAGCCCGATAGGCGGAGGCACTCTTTGTTCAGGACTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

305

Amino Acids

34.43

Weight (kDa)

6.17

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39650 AT2G39650
fragaria_vesca FvH4_7g22510
malus_domestica MD01G1134400.v1.1 MD07G1198800.v1.1 MD07G1198900.v1.1
prunus_persica Prupe.2G235800_v2.0.a1
pyrus_communis pycom01g15510 pycom07g18610
rosa_chinensis RchiOBHm_Chr1g0367191
rosa_laevigata RLG00000027293
rosa_multiflora Rmu_sc0006367.1_g000003
rosa_roxburghii Rroxscaffold_4G00289560
rosa_rugosa Rorug01G0335100
rosa_samantha Rh1AG341900 Rh1BG302200 Rh1CG318600 Rh1DG334700
rosa_wichuraiana Rw1G030380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 783
AccBSI CCGCTC 1 cut(s) 527
AccII CGCG 1 cut(s) 389
AciI CCGC 5 cut(s) 26, 30, 389, 527, 886
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 2 cut(s) 614, 794
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 3 cut(s) 424, 588, 885
AgsI TTSAA 8 cut(s) 214, 515, 533, 553, 608, 790, 824, 841
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 6 cut(s) 137, 327, 352, 471, 521, 623
AluI AGCT 6 cut(s) 137, 327, 352, 471, 521, 623
Alw21I GWGCWC 2 cut(s) 87, 473
Alw26I GTCTC 3 cut(s) 485, 709, 807
AlwNI CAGNNNCTG 1 cut(s) 805
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 5 cut(s) 153, 327, 377, 623, 796
ApoI RAATTY 1 cut(s) 201
AspA2I CCTAGG 1 cut(s) 587
AspLEI GCGC 2 cut(s) 389, 784
AspS9I GGNCC 2 cut(s) 415, 427
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 179, 460
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 2 cut(s) 415, 427
AvrII CCTAGG 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 407
BanII GRGCYC 2 cut(s) 473, 581
BauI CACGAG 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 87, 473
BbvI GCAGC 5 cut(s) 165, 314, 364, 610, 783
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 420
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 3 cut(s) 485, 709, 807
BfaI CTAG 3 cut(s) 522, 588, 627
BfmI CTRYAG 1 cut(s) 797
BglI GCCNNNNNGGC 1 cut(s) 883
BglII AGATCT 1 cut(s) 629
BisI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 7 cut(s) 32, 155, 329, 379, 391, 625, 798
Bme1390I CCNGG 2 cut(s) 11, 420
Bme18I GGWCC 2 cut(s) 415, 427
BmeT110I CYCGRG 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 415, 427
BmiI GGNNCC 4 cut(s) 417, 428, 580, 751
BmrFI CCNGG 2 cut(s) 11, 420
BmsI GCATC 4 cut(s) 339, 364, 642, 783
BplI GAGNNNNNCTC 2 cut(s) 632, 664
BpmI CTGGAG 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 418, 587, 665
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 588, 885
Bse1I ACTGG 2 cut(s) 412, 563
Bse3DI GCAATG 1 cut(s) 779
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 418, 587, 665
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 3 cut(s) 424, 588, 885
BseMI GCAATG 1 cut(s) 779
BseMII CTCAG 4 cut(s) 129, 242, 347, 465
BseNI ACTGG 2 cut(s) 412, 563
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 5 cut(s) 165, 314, 364, 610, 783
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 1 cut(s) 617
BsiHKAI GWGCWC 2 cut(s) 87, 473
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 2 cut(s) 401, 440
BslI CCNNNNNNNGG 3 cut(s) 424, 588, 885
BsmAI GTCTC 3 cut(s) 485, 709, 807
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 401, 440
BsnI GGCC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 638
Bsp1286I GDGCHC 4 cut(s) 87, 407, 473, 581
Bsp143I GATC 7 cut(s) 54, 178, 289, 340, 629, 671, 856
BspACI CCGC 5 cut(s) 26, 30, 389, 527, 886
BspANI GGCC 1 cut(s) 617
BspCNI CTCAG 4 cut(s) 130, 241, 348, 466
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 4 cut(s) 417, 428, 580, 751
BspMAI CTGCAG 1 cut(s) 801
BsrBI CCGCTC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 779
BsrI ACTGG 2 cut(s) 412, 563
BssECI CCNNGG 3 cut(s) 418, 587, 665
BssMI GATC 7 cut(s) 54, 178, 289, 340, 629, 671, 856
BssSI CACGAG 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 587
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 4 cut(s) 125, 273, 720, 749
BstAPI GCANNNNNTGC 1 cut(s) 805
BstC8I GCNNGC 3 cut(s) 28, 83, 690
BstDEI CTNAG 4 cut(s) 138, 228, 356, 474
BstDSI CCRYGG 1 cut(s) 665
BstEII GGTNACC 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 586
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 389
BstHHI GCGC 2 cut(s) 389, 784
BstKTI GATC 7 cut(s) 57, 181, 292, 343, 632, 674, 859
BstMAI GTCTC 3 cut(s) 485, 709, 807
BstMBI GATC 7 cut(s) 54, 178, 289, 340, 629, 671, 856
BstNI CCWGG 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 9, 418
BstSFI CTRYAG 1 cut(s) 797
BstSLI GKGCMC 1 cut(s) 407
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 5 cut(s) 165, 314, 364, 610, 783
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BsuRI GGCC 1 cut(s) 617
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 6 cut(s) 105, 228, 320, 405, 784, 910
Cac8I GCNNGC 3 cut(s) 28, 83, 690
CaiI CAGNNNCTG 1 cut(s) 805
CfoI GCGC 2 cut(s) 389, 784
Cfr13I GGNCC 2 cut(s) 415, 427
CseI GACGC 2 cut(s) 118, 467
Csp6I GTAC 1 cut(s) 232
CviAII CATG 3 cut(s) 22, 100, 431
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 4 cut(s) 138, 228, 356, 474
DpnI GATC 7 cut(s) 56, 180, 291, 342, 631, 673, 858
DpnII GATC 7 cut(s) 54, 178, 289, 340, 629, 671, 856
EaeI YGGCCR 1 cut(s) 615
EciI GGCGGA 1 cut(s) 901
Ecl136II GAGCTC 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 587
Eco24I GRGCYC 2 cut(s) 473, 581
Eco47I GGWCC 2 cut(s) 415, 427
Eco53kI GAGCTC 1 cut(s) 471
Eco57I CTGAAG 2 cut(s) 614, 794
Eco88I CYCGRG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 471
EcoNI CCTNNNNNAGG 1 cut(s) 586
EcoO109I RGGNCCY 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 587
EcoT38I GRGCYC 2 cut(s) 473, 581
ErhI CCWWGG 1 cut(s) 587
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 3 cut(s) 25, 103, 434
FaqI GGGAC 2 cut(s) 401, 440
FatI CATG 3 cut(s) 21, 99, 430
FauI CCCGC 1 cut(s) 19
Fnu4HI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 2 cut(s) 473, 581
Fsp4HI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
FspAI RTGCGCAY 1 cut(s) 783
FspBI CTAG 3 cut(s) 522, 588, 627
FspI TGCGCA 1 cut(s) 783
GlaI GCGC 2 cut(s) 388, 783
GluI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 1 cut(s) 617
HapII CCGG 1 cut(s) 10
HgaI GACGC 2 cut(s) 118, 467
HhaI GCGC 2 cut(s) 389, 784
Hin1II CATG 3 cut(s) 25, 103, 434
Hin6I GCGC 2 cut(s) 387, 782
HinP1I GCGC 2 cut(s) 387, 782
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 4 cut(s) 140, 164, 701, 907
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 1 cut(s) 10
HphI GGTGA 2 cut(s) 179, 460
Hpy166II GTNNAC 2 cut(s) 451, 745
Hpy188I TCNGA 9 cut(s) 54, 59, 134, 178, 267, 357, 475, 503, 817
Hpy188III TCNNGA 1 cut(s) 904
Hpy8I GTNNAC 2 cut(s) 451, 745
Hpy99I CGWCG 2 cut(s) 38, 134
HpyCH4III ACNGT 4 cut(s) 125, 273, 720, 749
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 6 cut(s) 21, 318, 330, 688, 777, 799
HpyF3I CTNAG 4 cut(s) 138, 228, 356, 474
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 3 cut(s) 25, 103, 434
HspAI GCGC 2 cut(s) 387, 782
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 7 cut(s) 54, 178, 289, 340, 629, 671, 856
LmnI GCTCC 3 cut(s) 134, 468, 584
Lsp1109I GCAGC 5 cut(s) 165, 314, 364, 610, 783
LweI GCATC 4 cut(s) 339, 364, 642, 783
MaeI CTAG 3 cut(s) 522, 588, 627
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 103, 185
MalI GATC 7 cut(s) 56, 180, 291, 342, 631, 673, 858
MbiI CCGCTC 1 cut(s) 527
MboI GATC 7 cut(s) 54, 178, 289, 340, 629, 671, 856
MboII GAAGA 3 cut(s) 596, 624, 802
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 4 cut(s) 87, 407, 473, 581
MluCI AATT 6 cut(s) 201, 295, 319, 460, 757, 819
MlyI GAGTC 2 cut(s) 149, 901
MmeI TCCRAC 1 cut(s) 112
MseI TTAA 5 cut(s) 68, 294, 348, 723, 744
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 11, 420
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 389
NciI CCSGG 1 cut(s) 11
NdeII GATC 7 cut(s) 54, 178, 289, 340, 629, 671, 856
NlaIII CATG 3 cut(s) 25, 103, 434
NlaIV GGNNCC 4 cut(s) 417, 428, 580, 751
NmuCI GTSAC 2 cut(s) 103, 185
NsbI TGCGCA 1 cut(s) 783
PaeR7I CTCGAG 1 cut(s) 638
PfeI GAWTC 2 cut(s) 164, 701
PkrI GCNGC 7 cut(s) 32, 155, 329, 379, 391, 625, 798
PleI GAGTC 2 cut(s) 148, 901
PpsI GAGTC 2 cut(s) 148, 901
PpuMI RGGWCCY 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 418
PspEI GGTNACC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 4 cut(s) 417, 428, 580, 751
PspPI GGNCC 2 cut(s) 415, 427
PspPPI RGGWCCY 1 cut(s) 415
PspXI VCTCGAGB 1 cut(s) 638
PstI CTGCAG 1 cut(s) 801
PstNI CAGNNNCTG 1 cut(s) 805
PsuI RGATCY 1 cut(s) 629
PvuII CAGCTG 1 cut(s) 327
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SacI GAGCTC 1 cut(s) 473
SaqAI TTAA 5 cut(s) 68, 294, 348, 723, 744
SatI GCNGC 7 cut(s) 31, 154, 328, 378, 390, 624, 797
Sau3AI GATC 7 cut(s) 54, 178, 289, 340, 629, 671, 856
Sau96I GGNCC 2 cut(s) 415, 427
SchI GAGTC 2 cut(s) 149, 901
ScrFI CCNGG 2 cut(s) 11, 420
SduI GDGCHC 4 cut(s) 87, 407, 473, 581
SfaNI GCATC 4 cut(s) 339, 364, 642, 783
SfcI CTRYAG 1 cut(s) 797
Sfr274I CTCGAG 1 cut(s) 638
SinI GGWCC 2 cut(s) 415, 427
SlaI CTCGAG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 6 cut(s) 201, 295, 319, 460, 757, 819
SsiI CCGC 5 cut(s) 26, 30, 389, 527, 886
SspI AATATT 1 cut(s) 549
SspMI CTAG 3 cut(s) 522, 588, 627
SstI GAGCTC 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 9, 418
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 4 cut(s) 125, 273, 720, 749
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 639, 650
TaqII GACCGA 1 cut(s) 173
TasI AATT 6 cut(s) 201, 295, 319, 460, 757, 819
TauI GCSGC 2 cut(s) 33, 392
TfiI GAWTC 2 cut(s) 164, 701
Tru1I TTAA 5 cut(s) 68, 294, 348, 723, 744
Tru9I TTAA 5 cut(s) 68, 294, 348, 723, 744
TscAI CASTG 5 cut(s) 112, 228, 320, 412, 784
TseFI GTSAC 2 cut(s) 103, 185
TseI GCWGC 5 cut(s) 153, 327, 377, 623, 796
Tsp45I GTSAC 2 cut(s) 103, 185
TspDTI ATGAA 2 cut(s) 248, 447
TspGWI ACGGA 2 cut(s) 195, 654
TspRI CASTG 5 cut(s) 112, 228, 320, 412, 784
VpaK11BI GGWCC 2 cut(s) 415, 427
XagI CCTNNNNNAGG 1 cut(s) 586
XapI RAATTY 1 cut(s) 201
XhoI CTCGAG 1 cut(s) 638
XmaJI CCTAGG 1 cut(s) 587
XspI CTAG 3 cut(s) 522, 588, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.