MD07G1198900.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012503
Physical Location & Seq
Reverse (-)
27733100 .. 27735615
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1198900.v1.1.491

Sequence Viewer

Length: 915 bp
ATGGACTGCCGGGTAGTGTGCATGGCAGGCGGCGACGTGTGGATGAGGGGTCAGATCGGAGGGGGTTTCAGCCACGAGAGCGAGCACGACCTCGCTCTCATGGTCACTGATTTTTTGGAAAACGGTAGCGTTGGAGCTGAGTCGTGGTGTAGTAGCGACAGCGATTCTGCTCTCTCCGATCTTGGTCACCTTGCCGATAAAATTCCGTTTTTCAAGCGTTCAGTGGGTCAGTACGAAAGCGATTTGACTTCAGTGGTTCATTCTTCGATACTGTCCATCAGCGAAAACGATCTTAATTTTGATAAGTCAGGTCAATGCAATTCCAGCTGCCTCAAGTTTGCTCTGGTTAAGCTTCTGAGGCTTTCAGGTTATGACGCTGCCGTGTGCGCGGCTCGGTGGCAGGGCAGTGGCAAGGTCCCCGGAGGGGATCATGAATATATTGATGTGGTGAACTACAACAATTTGGGGAGCTCTGAGCGTCTCATCATTGATCTTGATTTCCGGAGCCACTTTGAAATAGCTAGAGCTGTCCAATCGTATGGTAGAATATTGAATTCACTACCGGTTGTTTATGTTGGATCCTTGACTAGGCTGAAACAGTACCTTCAAGTTATGGCTGAAGCTGCGAGATCTTCCCTAAAGCAGAACTCGATGCCTCTTCCTCCGTGGAGATCGCTTGCATATCTGCAAGCGAAATGGCAGTCACCATACCAGAGACAGTTTAATCTAGAAGAACAGAATGTTAATGGTTCCTACAATTTTGACCACAAGAAATGCAGTGCACATTTGAAGATGCTGCAGTCTCTGCTTCAGTCTGAAATTGAAGCAGAAAGACTGTTGAGGCCCATAAATAACGATCCTGTTAGGAGGCACAAGCCCGATAGGCGGAGGCACTCTTTGTTCAGGATTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

305

Amino Acids

34.23

Weight (kDa)

7.16

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 34 - 239 2.3e-63 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39650 AT2G39650
fragaria_vesca FvH4_7g22510
malus_domestica MD01G1134400.v1.1 MD07G1198800.v1.1 MD07G1198900.v1.1
prunus_persica Prupe.2G235800_v2.0.a1
pyrus_communis pycom01g15510 pycom07g18610
rosa_chinensis RchiOBHm_Chr1g0367191
rosa_laevigata RLG00000027293
rosa_multiflora Rmu_sc0006367.1_g000003
rosa_roxburghii Rroxscaffold_4G00289560
rosa_rugosa Rorug01G0335100
rosa_samantha Rh1AG341900 Rh1BG302200 Rh1CG318600 Rh1DG334700
rosa_wichuraiana Rw1G030380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 389
AccIII TCCGGA 1 cut(s) 501
AciI CCGC 3 cut(s) 30, 389, 886
AclWI GGATC 4 cut(s) 435, 573, 586, 851
AcsI RAATTY 2 cut(s) 201, 553
AcuI CTGAAG 3 cut(s) 234, 639, 794
AfaI GTAC 2 cut(s) 233, 602
AfiI CCNNNNNNNGG 3 cut(s) 424, 588, 885
AflIII ACRYGT 1 cut(s) 36
AgeI ACCGGT 1 cut(s) 562
AgsI TTSAA 6 cut(s) 214, 515, 553, 608, 790, 824
AjiI CACGTC 1 cut(s) 37
AluBI AGCT 7 cut(s) 137, 327, 352, 471, 521, 527, 623
AluI AGCT 7 cut(s) 137, 327, 352, 471, 521, 527, 623
Alw21I GWGCWC 3 cut(s) 87, 473, 784
Alw26I GTCTC 3 cut(s) 485, 709, 807
Alw44I GTGCAC 1 cut(s) 780
AlwI GGATC 4 cut(s) 435, 573, 586, 851
AlwNI CAGNNNCTG 1 cut(s) 805
Aor13HI TCCGGA 1 cut(s) 501
AoxI GGCC 1 cut(s) 842
ApaLI GTGCAC 1 cut(s) 780
ApeKI GCWGC 4 cut(s) 327, 377, 623, 796
ApoI RAATTY 2 cut(s) 201, 553
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AsiGI ACCGGT 1 cut(s) 562
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 415, 843
AsuC2I CCSGG 2 cut(s) 11, 420
AsuHPI GGTGA 3 cut(s) 179, 460, 696
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 784
BamHI GGATCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 473
BauI CACGAG 1 cut(s) 74
Bbv12I GWGCWC 3 cut(s) 87, 473, 784
BbvI GCAGC 4 cut(s) 314, 364, 610, 783
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 365
BcnI CCSGG 2 cut(s) 11, 420
BcoDI GTCTC 3 cut(s) 485, 709, 807
BfaI CTAG 3 cut(s) 522, 588, 728
BfmI CTRYAG 1 cut(s) 797
BglI GCCNNNNNGGC 1 cut(s) 883
BglII AGATCT 1 cut(s) 629
BisI GCNGC 6 cut(s) 31, 328, 378, 390, 624, 797
BlsI GCNGC 6 cut(s) 32, 329, 379, 391, 625, 798
Bme1390I CCNGG 2 cut(s) 11, 420
Bme18I GGWCC 1 cut(s) 415
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 415, 843
BmiI GGNNCC 4 cut(s) 417, 506, 580, 751
BmrFI CCNGG 2 cut(s) 11, 420
BmsI GCATC 2 cut(s) 642, 783
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 2 cut(s) 11, 420
BsaJI CCNNGG 2 cut(s) 418, 665
BsaWI WCCGGW 2 cut(s) 501, 562
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 588, 885
Bse118I RCCGGY 1 cut(s) 562
BseAI TCCGGA 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 418, 665
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 3 cut(s) 424, 588, 885
BseMII CTCAG 3 cut(s) 129, 347, 465
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 4 cut(s) 314, 364, 610, 783
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 1 cut(s) 844
BshTI ACCGGT 1 cut(s) 562
BsiHKAI GWGCWC 3 cut(s) 87, 473, 784
BsiSI CCGG 4 cut(s) 10, 420, 502, 563
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 3 cut(s) 424, 588, 885
BsmAI GTCTC 3 cut(s) 485, 709, 807
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 1 cut(s) 844
Bsp1286I GDGCHC 3 cut(s) 87, 473, 784
Bsp13I TCCGGA 1 cut(s) 501
Bsp143I GATC 9 cut(s) 54, 178, 289, 427, 490, 578, 629, 671, 856
BspACI CCGC 3 cut(s) 30, 389, 886
BspANI GGCC 1 cut(s) 844
BspCNI CTCAG 3 cut(s) 130, 348, 466
BspEI TCCGGA 1 cut(s) 501
BspFNI CGCG 1 cut(s) 389
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 4 cut(s) 417, 506, 580, 751
BspMAI CTGCAG 1 cut(s) 801
BspPI GGATC 4 cut(s) 435, 573, 586, 851
BsrFI RCCGGY 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 418, 665
BssMI GATC 9 cut(s) 54, 178, 289, 427, 490, 578, 629, 671, 856
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst4CI ACNGT 5 cut(s) 125, 273, 600, 720, 837
Bst6I CTCTTC 1 cut(s) 663
BstAPI GCANNNNNTGC 1 cut(s) 805
BstC8I GCNNGC 4 cut(s) 28, 83, 678, 690
BstDEI CTNAG 3 cut(s) 138, 356, 474
BstDSI CCRYGG 1 cut(s) 665
BstEII GGTNACC 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 586
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 389
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 9 cut(s) 57, 181, 292, 430, 493, 581, 632, 674, 859
BstMAI GTCTC 3 cut(s) 485, 709, 807
BstMBI GATC 9 cut(s) 54, 178, 289, 427, 490, 578, 629, 671, 856
BstMWI GCNNNNNNNGC 8 cut(s) 27, 78, 324, 358, 386, 623, 805, 883
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 9, 418
BstSFI CTRYAG 1 cut(s) 797
BstSLI GKGCMC 1 cut(s) 784
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 4 cut(s) 314, 364, 610, 783
BstX2I RGATCY 2 cut(s) 578, 629
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 2 cut(s) 578, 629
BsuRI GGCC 1 cut(s) 844
BtgI CCRYGG 1 cut(s) 665
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 2 cut(s) 412, 784
BtsIMutI CAGTG 5 cut(s) 105, 228, 258, 412, 784
Cac8I GCNNGC 4 cut(s) 28, 83, 678, 690
CaiI CAGNNNCTG 1 cut(s) 805
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 562
Cfr13I GGNCC 2 cut(s) 415, 843
CseI GACGC 2 cut(s) 383, 467
Csp6I GTAC 2 cut(s) 232, 601
CspAI ACCGGT 1 cut(s) 562
CviAII CATG 3 cut(s) 22, 100, 431
CviQI GTAC 2 cut(s) 232, 601
DdeI CTNAG 3 cut(s) 138, 356, 474
DpnI GATC 9 cut(s) 56, 180, 291, 429, 492, 580, 631, 673, 858
DpnII GATC 9 cut(s) 54, 178, 289, 427, 490, 578, 629, 671, 856
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
EciI GGCGGA 1 cut(s) 901
Ecl136II GAGCTC 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 471
Eco57I CTGAAG 3 cut(s) 234, 639, 794
Eco91I GGTNACC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 471
EcoNI CCTNNNNNAGG 1 cut(s) 586
EcoO109I RGGNCCY 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 3 cut(s) 25, 103, 434
FaqI GGGAC 1 cut(s) 401
FatI CATG 3 cut(s) 21, 99, 430
Fnu4HI GCNGC 6 cut(s) 31, 328, 378, 390, 624, 797
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 6 cut(s) 31, 328, 378, 390, 624, 797
FspBI CTAG 3 cut(s) 522, 588, 728
GlaI GCGC 1 cut(s) 388
GluI GCNGC 6 cut(s) 31, 328, 378, 390, 624, 797
HaeIII GGCC 1 cut(s) 844
HapII CCGG 4 cut(s) 10, 420, 502, 563
HgaI GACGC 2 cut(s) 383, 467
HhaI GCGC 1 cut(s) 389
Hin1II CATG 3 cut(s) 25, 103, 434
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 3 cut(s) 140, 164, 907
HpaII CCGG 4 cut(s) 10, 420, 502, 563
HphI GGTGA 3 cut(s) 179, 460, 696
Hpy166II GTNNAC 2 cut(s) 451, 782
Hpy188I TCNGA 6 cut(s) 54, 59, 178, 357, 475, 817
Hpy188III TCNNGA 5 cut(s) 431, 494, 502, 728, 904
Hpy8I GTNNAC 2 cut(s) 451, 782
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 614
HpyCH4III ACNGT 5 cut(s) 125, 273, 600, 720, 837
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 7 cut(s) 21, 318, 680, 688, 777, 782, 799
HpyF10VI GCNNNNNNNGC 8 cut(s) 27, 78, 324, 358, 386, 623, 805, 883
HpyF3I CTNAG 3 cut(s) 138, 356, 474
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 3 cut(s) 25, 103, 434
HspAI GCGC 1 cut(s) 387
Kpn2I TCCGGA 1 cut(s) 501
Kzo9I GATC 9 cut(s) 54, 178, 289, 427, 490, 578, 629, 671, 856
LmnI GCTCC 3 cut(s) 134, 468, 504
Lsp1109I GCAGC 4 cut(s) 314, 364, 610, 783
LweI GCATC 2 cut(s) 642, 783
MaeI CTAG 3 cut(s) 522, 588, 728
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 103, 185, 702
MalI GATC 9 cut(s) 56, 180, 291, 429, 492, 580, 631, 673, 858
MboI GATC 9 cut(s) 54, 178, 289, 427, 490, 578, 629, 671, 856
MboII GAAGA 5 cut(s) 255, 624, 650, 743, 802
MflI RGATCY 2 cut(s) 578, 629
MhlI GDGCHC 3 cut(s) 87, 473, 784
MluCI AATT 7 cut(s) 201, 295, 319, 460, 553, 757, 819
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 112, 556
MroI TCCGGA 1 cut(s) 501
MseI TTAA 4 cut(s) 294, 348, 723, 744
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 4 cut(s) 10, 420, 502, 563
MspR9I CCNGG 2 cut(s) 11, 420
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 8 cut(s) 27, 78, 324, 358, 386, 623, 805, 883
NciI CCSGG 2 cut(s) 11, 420
NdeII GATC 9 cut(s) 54, 178, 289, 427, 490, 578, 629, 671, 856
NlaIII CATG 3 cut(s) 25, 103, 434
NlaIV GGNNCC 4 cut(s) 417, 506, 580, 751
NmuCI GTSAC 3 cut(s) 103, 185, 702
PagI TCATGA 1 cut(s) 430
PfeI GAWTC 2 cut(s) 164, 907
PinAI ACCGGT 1 cut(s) 562
PkrI GCNGC 6 cut(s) 32, 329, 379, 391, 625, 798
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 415
PspEI GGTNACC 1 cut(s) 185
PspN4I GGNNCC 4 cut(s) 417, 506, 580, 751
PspPI GGNCC 2 cut(s) 415, 843
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 801
PstNI CAGNNNCTG 1 cut(s) 805
PsuI RGATCY 2 cut(s) 578, 629
PvuII CAGCTG 1 cut(s) 327
RsaI GTAC 2 cut(s) 233, 602
RsaNI GTAC 2 cut(s) 232, 601
SacI GAGCTC 1 cut(s) 473
SaqAI TTAA 4 cut(s) 294, 348, 723, 744
SatI GCNGC 6 cut(s) 31, 328, 378, 390, 624, 797
Sau3AI GATC 9 cut(s) 54, 178, 289, 427, 490, 578, 629, 671, 856
Sau96I GGNCC 2 cut(s) 415, 843
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 11, 420
SduI GDGCHC 3 cut(s) 87, 473, 784
SfaNI GCATC 2 cut(s) 642, 783
SfcI CTRYAG 1 cut(s) 797
SinI GGWCC 1 cut(s) 415
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 7 cut(s) 201, 295, 319, 460, 553, 757, 819
SsiI CCGC 3 cut(s) 30, 389, 886
SspI AATATT 1 cut(s) 549
SspMI CTAG 3 cut(s) 522, 588, 728
SstI GAGCTC 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 9, 418
TaaI ACNGT 5 cut(s) 125, 273, 600, 720, 837
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 266, 650
TasI AATT 7 cut(s) 201, 295, 319, 460, 553, 757, 819
TauI GCSGC 2 cut(s) 33, 392
TfiI GAWTC 2 cut(s) 164, 907
Tru1I TTAA 4 cut(s) 294, 348, 723, 744
Tru9I TTAA 4 cut(s) 294, 348, 723, 744
TscAI CASTG 5 cut(s) 112, 228, 258, 412, 784
TseFI GTSAC 3 cut(s) 103, 185, 702
TseI GCWGC 4 cut(s) 327, 377, 623, 796
Tsp45I GTSAC 3 cut(s) 103, 185, 702
TspDTI ATGAA 2 cut(s) 248, 447
TspGWI ACGGA 2 cut(s) 195, 654
TspRI CASTG 5 cut(s) 112, 228, 258, 412, 784
VneI GTGCAC 1 cut(s) 780
VpaK11BI GGWCC 1 cut(s) 415
XagI CCTNNNNNAGG 1 cut(s) 586
XapI RAATTY 2 cut(s) 201, 553
XbaI TCTAGA 1 cut(s) 727
XspI CTAG 3 cut(s) 522, 588, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.