FvH4_7g22510

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012503
Physical Location & Seq
Reverse (-)
17713929 .. 17717135
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22510.t1

Sequence Viewer

Length: 912 bp
ATGGATTGCCGTGTGATAATGGCCGGCGGTGATGTTTGGATGAGAGGTCAGATCGGAGGGGCTTTAAGCCATGAGAGCGAGCACGACCTGGCTTTGATGGTCAGCGATTTCTTGGAGAACGGTAGCGCCGGCGGTGACTCTTGGTGTAGCAGCGATAGCGATTCTGCTCATCTCTCCGATCTCGCTCACCTCGCCGATAAGATTAAGTTTTACAAGTGCTCGGTGGCTCAGTACGAAAGTGATTTGGCATCAGTGGTTCATTCACTTATACTATCCATCAGTGAGAACAATCTTCATCTTGTCAAGTCAGGTCCATGCAATGCCAGCTGCCTCAAGTCAACTCTGGTAAAGCTTCTCAGGCGCTCTGGTTATGATGCTGCTGTGTGTTCGGCTAGATGGCATGGCAGTGGAAAGGTCCCTGGAGGGGATCATGAATATATAGATGTAGTCAACCACAGCGATACAGAGAGTTCTGAACGTCTCATCATTGATATTGATTTTCGAAGCCACTTTGAAATAGCTAGAGCTGTTCAATCATATGACAGGATATTGAATTCGCTGCCGGTTGTTTATGTGGGCTCCTTGACTAGGTTGAAACAGTTTCTTCCAGTTATGGTTGAAGCAGCTAGATCTTCCCTCAAGCAGAACTCAATGCCTCTTCCTCCGTGGAGATCACTTGCTTATTTGCAAGCAAAATGGCAGTCACCTTATCAGAGACACTTCAATCTAGATGAACAAAATGGTAATGGTGTATTCTCTTTTGACCACAAACAATGCAGTGGACATTTGAAGATGCTGCAGTCACTGCTTCAGTCTGAAATAGAAGCAGATAGACTGTTAAAACCCAAAAGCAATGATAATAACAGGAGACACAAGCCTGTGCGGAGTTACTCTTTGTTCCGGAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

304

Amino Acids

33.86

Weight (kDa)

6.92

Isoelectric Point (pI)

56.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 33 - 239 3.3e-65 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39650 AT2G39650
fragaria_vesca FvH4_7g22510
malus_domestica MD01G1134400.v1.1 MD07G1198800.v1.1 MD07G1198900.v1.1
prunus_persica Prupe.2G235800_v2.0.a1
pyrus_communis pycom01g15510 pycom07g18610
rosa_chinensis RchiOBHm_Chr1g0367191
rosa_laevigata RLG00000027293
rosa_multiflora Rmu_sc0006367.1_g000003
rosa_roxburghii Rroxscaffold_4G00289560
rosa_rugosa Rorug01G0335100
rosa_samantha Rh1AG341900 Rh1BG302200 Rh1CG318600 Rh1DG334700
rosa_wichuraiana Rw1G030380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 900
AciI CCGC 3 cut(s) 27, 132, 883
AclWI GGATC 1 cut(s) 435
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 1 cut(s) 553
AcuI CTGAAG 1 cut(s) 794
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 424, 588
AgsI TTSAA 7 cut(s) 515, 533, 553, 595, 620, 724, 790
AjnI CCWGG 2 cut(s) 87, 418
AluBI AGCT 5 cut(s) 327, 352, 521, 527, 626
AluI AGCT 5 cut(s) 327, 352, 521, 527, 626
Alw21I GWGCWC 2 cut(s) 84, 221
Alw26I GTCTC 3 cut(s) 485, 709, 862
AlwI GGATC 1 cut(s) 435
AlwNI CAGNNNCTG 1 cut(s) 805
Aor13HI TCCGGA 1 cut(s) 900
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 6 cut(s) 150, 327, 377, 559, 623, 796
ApoI RAATTY 1 cut(s) 553
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AspLEI GCGC 2 cut(s) 128, 363
AspS9I GGNCC 2 cut(s) 311, 415
AsuHPI GGTGA 4 cut(s) 41, 146, 179, 696
AsuII TTCGAA 1 cut(s) 502
AvaII GGWCC 2 cut(s) 311, 415
BanII GRGCYC 1 cut(s) 581
Bbv12I GWGCWC 2 cut(s) 84, 221
BbvI GCAGC 6 cut(s) 162, 314, 364, 546, 635, 783
BccI CCATC 3 cut(s) 91, 284, 390
BciT130I CCWGG 2 cut(s) 89, 420
BcoDI GTCTC 3 cut(s) 485, 709, 862
BfaI CTAG 5 cut(s) 393, 522, 588, 627, 728
BfmI CTRYAG 1 cut(s) 797
BfoI RGCGCY 2 cut(s) 129, 364
BglII AGATCT 1 cut(s) 629
BisI GCNGC 6 cut(s) 151, 328, 378, 560, 624, 797
BlsI GCNGC 6 cut(s) 152, 329, 379, 561, 625, 798
Bme1390I CCNGG 2 cut(s) 89, 420
Bme18I GGWCC 2 cut(s) 311, 415
BmgT120I GGNCC 2 cut(s) 311, 415
BmiI GGNNCC 2 cut(s) 417, 580
BmrFI CCNGG 2 cut(s) 89, 420
BmsI GCATC 3 cut(s) 257, 364, 783
BpmI CTGGAG 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 502
BpuEI CTTGAG 2 cut(s) 317, 623
BsaJI CCNNGG 2 cut(s) 418, 665
BsaWI WCCGGW 1 cut(s) 900
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 588
Bse118I RCCGGY 3 cut(s) 23, 128, 562
Bse1I ACTGG 1 cut(s) 608
Bse3DI GCAATG 2 cut(s) 325, 859
BseAI TCCGGA 1 cut(s) 900
BseBI CCWGG 2 cut(s) 89, 420
BseDI CCNNGG 2 cut(s) 418, 665
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 424, 588
BseMI GCAATG 2 cut(s) 325, 859
BseMII CTCAG 2 cut(s) 242, 370
BseNI ACTGG 1 cut(s) 608
BseXI GCAGC 6 cut(s) 162, 314, 364, 546, 635, 783
BshFI GGCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 84, 221
BsiSI CCGG 4 cut(s) 24, 129, 563, 901
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 424, 588
BsmAI GTCTC 3 cut(s) 485, 709, 862
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 3 cut(s) 84, 221, 581
Bsp13I TCCGGA 1 cut(s) 900
Bsp143I GATC 5 cut(s) 51, 178, 427, 629, 671
BspACI CCGC 3 cut(s) 27, 132, 883
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 2 cut(s) 241, 369
BspEI TCCGGA 1 cut(s) 900
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 417, 580
BspMAI CTGCAG 1 cut(s) 801
BspPI GGATC 1 cut(s) 435
BspT104I TTCGAA 1 cut(s) 502
BsrDI GCAATG 2 cut(s) 325, 859
BsrFI RCCGGY 3 cut(s) 23, 128, 562
BsrI ACTGG 1 cut(s) 608
BssAI RCCGGY 3 cut(s) 23, 128, 562
BssECI CCNNGG 2 cut(s) 418, 665
BssMI GATC 5 cut(s) 51, 178, 427, 629, 671
Bst2UI CCWGG 2 cut(s) 89, 420
Bst4CI ACNGT 3 cut(s) 122, 600, 837
Bst6I CTCTTC 1 cut(s) 663
BstAPI GCANNNNNTGC 1 cut(s) 805
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 5 cut(s) 25, 80, 130, 325, 690
BstDEI CTNAG 2 cut(s) 228, 356
BstDSI CCRYGG 1 cut(s) 665
BstENI CCTNNNNNAGG 1 cut(s) 586
BstF5I GGATG 1 cut(s) 45
BstH2I RGCGCY 2 cut(s) 129, 364
BstHHI GCGC 2 cut(s) 128, 363
BstKTI GATC 5 cut(s) 54, 181, 430, 632, 674
BstMAI GTCTC 3 cut(s) 485, 709, 862
BstMBI GATC 5 cut(s) 51, 178, 427, 629, 671
BstMWI GCNNNNNNNGC 6 cut(s) 75, 156, 191, 324, 358, 805
BstNI CCWGG 2 cut(s) 89, 420
BstSCI CCNGG 2 cut(s) 87, 418
BstSFI CTRYAG 1 cut(s) 797
BstV1I GCAGC 6 cut(s) 162, 314, 364, 546, 635, 783
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 3 cut(s) 412, 784, 803
BtsIMutI CAGTG 5 cut(s) 258, 286, 412, 784, 803
Cac8I GCNNGC 5 cut(s) 25, 80, 130, 325, 690
CaiI CAGNNNCTG 1 cut(s) 805
CciI TCATGA 1 cut(s) 430
CfoI GCGC 2 cut(s) 128, 363
Cfr10I RCCGGY 3 cut(s) 23, 128, 562
Cfr13I GGNCC 2 cut(s) 311, 415
Csp6I GTAC 1 cut(s) 232
CviAII CATG 4 cut(s) 71, 315, 401, 431
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 2 cut(s) 228, 356
DpnI GATC 5 cut(s) 53, 180, 429, 631, 673
DpnII GATC 5 cut(s) 51, 178, 427, 629, 671
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 581
Eco47I GGWCC 2 cut(s) 311, 415
Eco57I CTGAAG 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 586
EcoO109I RGGNCCY 1 cut(s) 415
EcoRI GAATTC 1 cut(s) 553
EcoRII CCWGG 2 cut(s) 87, 418
EcoT38I GRGCYC 1 cut(s) 581
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 4 cut(s) 74, 318, 404, 434
FaqI GGGAC 1 cut(s) 401
FatI CATG 4 cut(s) 70, 314, 400, 430
FauNDI CATATG 1 cut(s) 538
Fnu4HI GCNGC 6 cut(s) 151, 328, 378, 560, 624, 797
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 581
Fsp4HI GCNGC 6 cut(s) 151, 328, 378, 560, 624, 797
FspBI CTAG 5 cut(s) 393, 522, 588, 627, 728
GlaI GCGC 2 cut(s) 127, 362
GluI GCNGC 6 cut(s) 151, 328, 378, 560, 624, 797
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 2 cut(s) 129, 364
HaeIII GGCC 1 cut(s) 23
HapII CCGG 4 cut(s) 24, 129, 563, 901
HhaI GCGC 2 cut(s) 128, 363
Hin1II CATG 4 cut(s) 74, 318, 404, 434
Hin6I GCGC 2 cut(s) 126, 361
HinP1I GCGC 2 cut(s) 126, 361
HincII GTYRAC 2 cut(s) 339, 451
HindII GTYRAC 2 cut(s) 339, 451
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 3 cut(s) 137, 161, 904
HpaII CCGG 4 cut(s) 24, 129, 563, 901
HphI GGTGA 4 cut(s) 41, 146, 179, 696
Hpy166II GTNNAC 3 cut(s) 339, 451, 782
Hpy188I TCNGA 6 cut(s) 51, 56, 178, 475, 714, 817
Hpy188III TCNNGA 3 cut(s) 431, 728, 901
Hpy8I GTNNAC 3 cut(s) 339, 451, 782
HpyCH4III ACNGT 3 cut(s) 122, 600, 837
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 4 cut(s) 318, 688, 777, 799
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 156, 191, 324, 358, 805
HpyF3I CTNAG 2 cut(s) 228, 356
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 4 cut(s) 74, 318, 404, 434
HspAI GCGC 2 cut(s) 126, 361
Kpn2I TCCGGA 1 cut(s) 900
KroI GCCGGC 2 cut(s) 23, 128
KroNI GCCGGC 2 cut(s) 25, 130
Kzo9I GATC 5 cut(s) 51, 178, 427, 629, 671
LmnI GCTCC 1 cut(s) 584
Lsp1109I GCAGC 6 cut(s) 162, 314, 364, 546, 635, 783
LweI GCATC 3 cut(s) 257, 364, 783
MaeI CTAG 5 cut(s) 393, 522, 588, 627, 728
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 4 cut(s) 134, 702, 801, 887
MalI GATC 5 cut(s) 53, 180, 429, 631, 673
MboI GATC 5 cut(s) 51, 178, 427, 629, 671
MboII GAAGA 5 cut(s) 284, 596, 624, 650, 802
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 3 cut(s) 84, 221, 581
MluCI AATT 1 cut(s) 553
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 8 cut(s) 38, 50, 200, 341, 416, 647, 666, 672
MreI CGCCGGCG 1 cut(s) 128
MroI TCCGGA 1 cut(s) 900
MroNI GCCGGC 2 cut(s) 23, 128
MseI TTAA 3 cut(s) 65, 204, 839
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 4 cut(s) 24, 129, 563, 901
MspR9I CCNGG 2 cut(s) 89, 420
MvaI CCWGG 2 cut(s) 89, 420
MwoI GCNNNNNNNGC 6 cut(s) 75, 156, 191, 324, 358, 805
NaeI GCCGGC 2 cut(s) 25, 130
NdeI CATATG 1 cut(s) 538
NdeII GATC 5 cut(s) 51, 178, 427, 629, 671
NgoMIV GCCGGC 2 cut(s) 23, 128
NlaIII CATG 4 cut(s) 74, 318, 404, 434
NlaIV GGNNCC 2 cut(s) 417, 580
NmuCI GTSAC 3 cut(s) 134, 702, 801
NspV TTCGAA 1 cut(s) 502
PagI TCATGA 1 cut(s) 430
PdiI GCCGGC 2 cut(s) 25, 130
PfeI GAWTC 2 cut(s) 161, 904
PkrI GCNGC 6 cut(s) 152, 329, 379, 561, 625, 798
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 2 cut(s) 87, 418
PspGI CCWGG 2 cut(s) 87, 418
PspN4I GGNNCC 2 cut(s) 417, 580
PspPI GGNCC 2 cut(s) 311, 415
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 801
PstNI CAGNNNCTG 1 cut(s) 805
PsuI RGATCY 1 cut(s) 629
PvuII CAGCTG 1 cut(s) 327
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 3 cut(s) 65, 204, 839
SatI GCNGC 6 cut(s) 151, 328, 378, 560, 624, 797
Sau3AI GATC 5 cut(s) 51, 178, 427, 629, 671
Sau96I GGNCC 2 cut(s) 311, 415
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 89, 420
SduI GDGCHC 3 cut(s) 84, 221, 581
SfaNI GCATC 3 cut(s) 257, 364, 783
SfcI CTRYAG 1 cut(s) 797
SfuI TTCGAA 1 cut(s) 502
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 2 cut(s) 311, 415
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 332, 638
SmoI CTYRAG 2 cut(s) 332, 638
Sse9I AATT 1 cut(s) 553
SsiI CCGC 3 cut(s) 27, 132, 883
SspMI CTAG 5 cut(s) 393, 522, 588, 627, 728
StyD4I CCNGG 2 cut(s) 87, 418
TaaI ACNGT 3 cut(s) 122, 600, 837
TaiI ACGT 1 cut(s) 481
TaqI TCGA 1 cut(s) 502
TasI AATT 1 cut(s) 553
TfiI GAWTC 2 cut(s) 161, 904
Tru1I TTAA 3 cut(s) 65, 204, 839
Tru9I TTAA 3 cut(s) 65, 204, 839
TscAI CASTG 5 cut(s) 258, 286, 412, 784, 810
TseFI GTSAC 3 cut(s) 134, 702, 801
TseI GCWGC 6 cut(s) 150, 327, 377, 559, 623, 796
Tsp45I GTSAC 3 cut(s) 134, 702, 801
TspDTI ATGAA 4 cut(s) 248, 284, 447, 747
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 5 cut(s) 258, 286, 412, 784, 810
VpaK11BI GGWCC 2 cut(s) 311, 415
XagI CCTNNNNNAGG 1 cut(s) 586
XapI RAATTY 1 cut(s) 553
XbaI TCTAGA 1 cut(s) 727
XspI CTAG 5 cut(s) 393, 522, 588, 627, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.