Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007015

Physical Location & Seq

Genomic Coordinates Forward (+)

16583003 .. 16586260

Gene Structure 3258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAGTACCGTCGGAGGTATAGAGCAGTTGATACCTGATTCCGTTTCAACGTCGTTCATCGAAACGGTGAACGGTTCGCACCAGTTCACGATTCAAGGTTACTCTCTAGCCAAAGGCATGAGCCCTGGGAAGTTTATACAGAGCGATATCTTCTCCGTTGGTGGATACGATTGGGCGATTTACTTCTATCCTGATGGGAAGAACCCGGAGGACCAGTCCTCGTATATCTCTTTGTTCATCGCTTTAGCGAGTGATTCTAATGATATTAGGGCTTTGTTTGAGCTTACGCTTATGGATCAGAGTGGGAAAGGGAAACATAAGGTGCATAGTCACTTTGATCGGGCGCTTGAAGGTGGTCCTTATACACTTAAGTATAAAGGAAGCATGTGGGGTTACAAACGCTTTTTCAAACGATCAGCTTTAGAAACCTCTGACTACTTAAAGGATGATTGTCTTGTCATCAATTGTACTGTTGGCGTTGTTAGAGCCCGACTCGAGGGTCCAAAACAGTATGGCATTGTGCTACCCCTGTCGAATATGGGTCAGGGATTGAAAGACTTGTTAGATTCTGAAGTTGGTTGTGACATAGCTTTCCAAGTCGGAGATGAAACATACAAAGCTCACAAACTGATTCTCGCGGCACGCTCCCCAGTTTTTAGAGCTCAGTTTTTTGGACCAATTGGGAATAACAATGTGGATAGAATAGTGATAGACGACATCGAACCTTCTATCTTCAAGGCTATGCTTAGCTTCATTTACACCGATGTACTTCCTAATGTGCATGAAATTACCGGGTCAACTTCTGCCAGTTCGTTTACAAACATGATACAACATCTCTTGGCAGCTGCTGACCTCTATGACCTTGCAAGGTTAAAGATATTATGTGAAGTTTTGCTATGCGAAAAACTTGATGTTGATAATGTGGCAACAACACTTGCGTTGGCTGAACAGCACCAATTCTTACAGCTCAAAGCGTTCTGCTTAGAATTTGTTGCATCTCCAGCAAACTTGGGAGCTGTAATGAAGTCCGAAGGGTTCAAGCACTTGAAACAGAGCTGTCCCACTTTGTTATCTGAGTTGCTGAACACTGTTGCAGCAGCAGATAAGAGCTCGACGAGTGGACAATCAAACAAGAAAAGAAGTGCGAGCAGTGTATTAGGGTGTGACACTACAAATGTGAGGCAATTGAGGAGGAGAACACGAAAAGAAGTGCGAGCAGTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019222 GO:0031323 GO:0031396 GO:0031399 GO:0032268 GO:0033554 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0104004 GO:1903320

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB MATH

Protein Analysis

408

Amino Acids

44.89

Weight (kDa)

6.76

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	26 - 158	2.2e-32	MATH domain
TRAF-mep_MATH	PF21355	53 - 154	1.9e-06	TRAF/meprin, MATH domain
BTB	PF00651	184 - 302	6.2e-24	BTB/POZ domain
BACK_BPM_SPOP	PF24570	307 - 361	3.4e-26	BPM/SPOP, BACK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39760 AT2G39760 AT2G39760 AT2G39760
fragaria_vesca	FvH4_7g23081 FvH4_7g23081
malus_domestica	MD01G1139500.v1.1 MD07G1203900.v1.1
prunus_persica	Prupe.2G240000_v2.0.a1 Prupe.2G240000_v2.0.a1 Prupe.2G240000_v2.0.a1
pyrus_communis	pycom01g16010 pycom07g19050
rosa_chinensis	RchiOBHm_Chr1g0368341
rosa_laevigata	RLG00000027218
rosa_multiflora	Rmu_sc0002709.1_g000047
rosa_roxburghii	Rroxscaffold_4G00288630
rosa_rugosa	Rorug01G0341300 Rorug01G0341400
rosa_samantha	Rh1AG347900 Rh1BG310900 Rh1CG326300 Rh1DG342700
rosa_wichuraiana	Rw0G002390 Rw1G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	498
AccII	CGCG	1 cut(s)	638
AciI	CCGC	1 cut(s)	638
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	986
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	3 cut(s)	7, 469, 768
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	8 cut(s)	48, 95, 350, 409, 553, 736, 1039, 1048
AjnI	CCWGG	1 cut(s)	124
Alw21I	GWGCWC	2 cut(s)	664, 1112
AlwI	GGATC	1 cut(s)	303
AlwNI	CAGNNNCTG	1 cut(s)	848
Ama87I	CYCGRG	1 cut(s)	494
ApeKI	GCWGC	4 cut(s)	842, 845, 1094, 1097
ApoI	RAATTY	1 cut(s)	986
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	4 cut(s)	211, 356, 500, 674
AsuC2I	CCSGG	2 cut(s)	206, 793
AsuHPI	GGTGA	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	4 cut(s)	211, 356, 500, 674
BanII	GRGCYC	4 cut(s)	125, 490, 664, 1112
Bbv12I	GWGCWC	2 cut(s)	664, 1112
BbvI	GCAGC	4 cut(s)	832, 854, 1106, 1109
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	158
BcnI	CCSGG	2 cut(s)	206, 793
BfaI	CTAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	347
BfrI	CTTAAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	158
BisI	GCNGC	5 cut(s)	639, 843, 846, 1095, 1098
BlpI	GCTNAGC	1 cut(s)	746
BlsI	GCNGC	5 cut(s)	640, 844, 847, 1096, 1099
Bme1390I	CCNGG	3 cut(s)	126, 206, 793
Bme18I	GGWCC	4 cut(s)	211, 356, 500, 674
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	4 cut(s)	211, 356, 500, 674
BmiI	GGNNCC	1 cut(s)	501
BmrFI	CCNGG	3 cut(s)	126, 206, 793
BmrI	ACTGGG	1 cut(s)	644
BmsI	GCATC	1 cut(s)	1004
BmuI	ACTGGG	1 cut(s)	644
BplI	GAGNNNNNCTC	2 cut(s)	477, 509
BpmI	CTGGAG	1 cut(s)	984
Bpu1102I	GCTNAGC	1 cut(s)	746
BpuMI	CCSGG	2 cut(s)	206, 793
BsaJI	CCNNGG	2 cut(s)	124, 125
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	4 cut(s)	82, 214, 650, 807
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	124, 125
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	677, 1065
BseNI	ACTGG	4 cut(s)	82, 214, 650, 807
BseRI	GAGGAG	2 cut(s)	1204, 1207
BseXI	GCAGC	4 cut(s)	832, 854, 1106, 1109
Bsh1236I	CGCG	1 cut(s)	638
BsiHKAI	GWGCWC	2 cut(s)	664, 1112
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	206, 792
BslFI	GGGAC	1 cut(s)	1044
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	1044
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	4 cut(s)	125, 490, 664, 1112
Bsp143I	GATC	3 cut(s)	295, 337, 413
Bsp1720I	GCTNAGC	1 cut(s)	746
BspACI	CCGC	1 cut(s)	638
BspCNI	CTCAG	2 cut(s)	676, 1066
BspFNI	CGCG	1 cut(s)	638
BspLI	GGNNCC	1 cut(s)	501
BspPI	GGATC	1 cut(s)	303
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	4 cut(s)	82, 214, 650, 807
BssECI	CCNNGG	2 cut(s)	124, 125
BssMI	GATC	3 cut(s)	295, 337, 413
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	6 cut(s)	10, 67, 74, 472, 510, 1090
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	643, 1147, 1215
BstDEI	CTNAG	5 cut(s)	663, 746, 982, 1074, 1224
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	638
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	3 cut(s)	298, 340, 416
BstMBI	GATC	3 cut(s)	295, 337, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	1001
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	3 cut(s)	124, 204, 791
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	4 cut(s)	832, 854, 1106, 1109
BsuI	GTATCC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	2 cut(s)	1156, 1224
BtsIMutI	CAGTG	3 cut(s)	1086, 1156, 1224
Cac8I	GCNNGC	3 cut(s)	643, 1147, 1215
CaiI	CAGNNNCTG	1 cut(s)	848
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	4 cut(s)	211, 356, 500, 674
Csp6I	GTAC	3 cut(s)	6, 468, 767
CviAII	CATG	4 cut(s)	118, 385, 782, 823
CviQI	GTAC	3 cut(s)	6, 468, 767
DdeI	CTNAG	5 cut(s)	663, 746, 982, 1074, 1224
DpnI	GATC	3 cut(s)	297, 339, 415
DpnII	GATC	3 cut(s)	295, 337, 413
DrdI	GACNNNNNNGTC	1 cut(s)	498
DseDI	GACNNNNNNGTC	1 cut(s)	498
Ecl136II	GAGCTC	2 cut(s)	662, 1110
Eco24I	GRGCYC	4 cut(s)	125, 490, 664, 1112
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	4 cut(s)	211, 356, 500, 674
Eco53kI	GAGCTC	2 cut(s)	662, 1110
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	494
EcoICRI	GAGCTC	2 cut(s)	662, 1110
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	148
EcoT38I	GRGCYC	4 cut(s)	125, 490, 664, 1112
FaeI	CATG	4 cut(s)	121, 388, 785, 826
FaqI	GGGAC	1 cut(s)	1044
FatI	CATG	4 cut(s)	117, 384, 781, 822
Fnu4HI	GCNGC	5 cut(s)	639, 843, 846, 1095, 1098
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	4 cut(s)	125, 490, 664, 1112
Fsp4HI	GCNGC	5 cut(s)	639, 843, 846, 1095, 1098
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	5 cut(s)	639, 843, 846, 1095, 1098
GsuI	CTGGAG	1 cut(s)	984
HaeII	RGCGCY	1 cut(s)	347
HapII	CCGG	2 cut(s)	206, 792
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	4 cut(s)	121, 388, 785, 826
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HinfI	GANTC	6 cut(s)	38, 91, 254, 492, 566, 631
HpaII	CCGG	2 cut(s)	206, 792
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	5 cut(s)	70, 87, 798, 816, 1121
Hpy188I	TCNGA	7 cut(s)	14, 300, 433, 571, 602, 1030, 1075
Hpy188III	TCNNGA	2 cut(s)	88, 191
Hpy8I	GTNNAC	5 cut(s)	70, 87, 798, 816, 1121
Hpy99I	CGWCG	3 cut(s)	14, 55, 1117
HpyAV	CCTTC	3 cut(s)	344, 735, 1025
HpyCH4III	ACNGT	6 cut(s)	10, 67, 74, 472, 510, 1090
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	5 cut(s)	325, 781, 866, 995, 1094
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1001
HpyF3I	CTNAG	5 cut(s)	663, 746, 982, 1074, 1224
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	4 cut(s)	121, 388, 785, 826
HspAI	GCGC	1 cut(s)	344
Kzo9I	GATC	3 cut(s)	295, 337, 413
LmnI	GCTCC	2 cut(s)	650, 1013
Lsp1109I	GCAGC	4 cut(s)	832, 854, 1106, 1109
LweI	GCATC	1 cut(s)	1004
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	5 cut(s)	98, 329, 392, 581, 1163
MalI	GATC	3 cut(s)	297, 339, 415
MboI	GATC	3 cut(s)	295, 337, 413
MboII	GAAGA	3 cut(s)	142, 211, 724
MfeI	CAATTG	3 cut(s)	463, 678, 1184
MhlI	GDGCHC	4 cut(s)	125, 490, 664, 1112
MluCI	AATT	6 cut(s)	463, 678, 786, 956, 986, 1184
MlyI	GAGTC	1 cut(s)	486
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	9 cut(s)	8, 202, 229, 439, 490, 863, 1173, 1182, 1185
MseI	TTAA	3 cut(s)	369, 440, 872
MspA1I	CMGCKG	1 cut(s)	845
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	206, 792
MspR9I	CCNGG	3 cut(s)	126, 206, 793
MunI	CAATTG	3 cut(s)	463, 678, 1184
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	1 cut(s)	1001
NciI	CCSGG	2 cut(s)	206, 793
NdeII	GATC	3 cut(s)	295, 337, 413
NlaIII	CATG	4 cut(s)	121, 388, 785, 826
NlaIV	GGNNCC	1 cut(s)	501
NmuCI	GTSAC	3 cut(s)	329, 581, 1163
NspI	RCATGY	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	494
PasI	CCCWGGG	1 cut(s)	125
PfeI	GAWTC	5 cut(s)	38, 91, 254, 566, 631
PkrI	GCNGC	5 cut(s)	640, 844, 847, 1096, 1099
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp124BI	GAGCTC	2 cut(s)	664, 1112
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	501
PspPI	GGNCC	4 cut(s)	211, 356, 500, 674
PspXI	VCTCGAGB	1 cut(s)	494
PstNI	CAGNNNCTG	1 cut(s)	848
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	3 cut(s)	7, 469, 768
RsaNI	GTAC	3 cut(s)	6, 468, 767
SacI	GAGCTC	2 cut(s)	664, 1112
SaqAI	TTAA	3 cut(s)	369, 440, 872
SatI	GCNGC	5 cut(s)	639, 843, 846, 1095, 1098
Sau3AI	GATC	3 cut(s)	295, 337, 413
Sau96I	GGNCC	4 cut(s)	211, 356, 500, 674
SchI	GAGTC	1 cut(s)	486
ScrFI	CCNGG	3 cut(s)	126, 206, 793
SduI	GDGCHC	4 cut(s)	125, 490, 664, 1112
SfaNI	GCATC	1 cut(s)	1004
Sfr274I	CTCGAG	1 cut(s)	494
SinI	GGWCC	4 cut(s)	211, 356, 500, 674
SlaI	CTCGAG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	368, 494
SmoI	CTYRAG	2 cut(s)	368, 494
Sse9I	AATT	6 cut(s)	463, 678, 786, 956, 986, 1184
SsiI	CCGC	1 cut(s)	638
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	2 cut(s)	664, 1112
StyD4I	CCNGG	3 cut(s)	124, 204, 791
TaaI	ACNGT	6 cut(s)	10, 67, 74, 472, 510, 1090
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	5 cut(s)	60, 495, 533, 720, 1112
TasI	AATT	6 cut(s)	463, 678, 786, 956, 986, 1184
TatI	WGTACW	2 cut(s)	467, 766
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	5 cut(s)	38, 91, 254, 566, 631
Tru1I	TTAA	3 cut(s)	369, 440, 872
Tru9I	TTAA	3 cut(s)	369, 440, 872
TscAI	CASTG	3 cut(s)	1093, 1156, 1224
TseFI	GTSAC	3 cut(s)	329, 581, 1163
TseI	GCWGC	4 cut(s)	842, 845, 1094, 1097
Tsp45I	GTSAC	3 cut(s)	329, 581, 1163
TspDTI	ATGAA	6 cut(s)	46, 226, 621, 742, 798, 1037
TspGWI	ACGGA	2 cut(s)	31, 145
TspRI	CASTG	3 cut(s)	1093, 1156, 1224
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	4 cut(s)	211, 356, 500, 674
XapI	RAATTY	1 cut(s)	986
XceI	RCATGY	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	494
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.