Rroxscaffold_4G00288630

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
9332520 .. 9337565
5046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288630.1

Sequence Viewer

Length: 1026 bp
ATGGCGAGCTCGAAGCCCAAGCCCGACGACGAGTCGTGCTCGCGCTCGATCAGCGAGACCGTCAACGGCTCCCACCGCTTCACCATAAAGGGCTATTCTTTGGCCAAAGGCATGGGCGCCGGTAAATACATACTCAGCGACACCTTCACCGTCGGCGGTTACGATTGGGCCATTTACTTTTACCCCGACGGTAAAAACCCCGAGGATAGCTCCGTCTACGTCTCCGTTTTCATTGCGCTGGTGAGTGAGGGCACCGATGTGAGGGCTTTGTTCGAGCTCACCTTGGTGGACCAGAGCAACAGTGGCAAGGACAAGGTGCATAGCCACTTTGATCGTGCCCTAGAGAGCGGGCCGTACACGTTGAAGTACCGAGGCAGCATGTGGGGTTACAAGCGATTTTTCAGAAGAGCAGCCCTTGAAACTTCTGAGTTTCTAAAGGATGATTCCCTTGTGTTGAACTGCACTGTTGGAGTTGTCAGAACTCGTCTCGAGTGTCCGAAACAATTTGCAATTACTGTACCACCATCAGACATGGGTGAAGGTCTTAAGGCTTTTCTAGATTCTGGAGCTGGTTGCGACGTAGTTTTTCAGGTTGGTGATGAGCAATTTAAAGCTCACAAGTTGATACTTGCTGCTCCAGAGACATTGAAGGTTGTCAGAGTTGTGTGTCTATCAAATTCTGATGGTTTAGGCTTTTATGGGAACTTTTGGGAGTTGACACTAATTAAAACTTATGGACCTGATGCACTTGCTGATAATTGGAATATTGTAAACCAGTTTGAGCTTGTTTTAGTAATCTCTGTAATGCAGTCAGATGGATACAAGCATCTAGAAGAGAGCTGCCCCTCAGTGTTACAGGAGCTACTGAAGACATTTGCATCAGTTGATGCAAGTGAAAATTCAAGTTCAAGTAAGAAGAGGAGTGGCAGCAGCATATATGGGCTAGACTTGCCAGCAGATGGCAGTGGGGCTGTAGCAGAATCAGCAAATCCCAATGGCAGGCGGTTGAGGCCGCGGCGATATTAA

Protein Analysis

341

Amino Acids

37.43

Weight (kDa)

5.83

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 24 - 156 3.5e-31 MATH domain
BACK_BPM_SPOP PF24570 267 - 289 1e-06 BPM/SPOP, BACK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 116, 251
AccB7I CCANNNNNTGG 1 cut(s) 959
AccBSI CCGCTC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 216
AccII CGCG 2 cut(s) 43, 1015
AciI CCGC 6 cut(s) 76, 156, 348, 1003, 1013, 1015
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 676, 898
AcuI CTGAAG 1 cut(s) 887
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 3 cut(s) 356, 368, 519
AfiI CCNNNNNNNGG 3 cut(s) 261, 959, 999
AflII CTTAAG 1 cut(s) 545
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 6 cut(s) 364, 419, 457, 649, 903, 909
AhdI GACNNNNNGTC 1 cut(s) 31
AleI CACNNNNGTG 2 cut(s) 257, 284
AluBI AGCT 8 cut(s) 9, 210, 277, 569, 614, 784, 840, 862
AluI AGCT 8 cut(s) 9, 210, 277, 569, 614, 784, 840, 862
Alw21I GWGCWC 3 cut(s) 11, 41, 279
Alw26I GTCTC 4 cut(s) 50, 226, 491, 635
Ama87I CYCGRG 2 cut(s) 200, 488
AoxI GGCC 4 cut(s) 102, 168, 350, 1010
ApeKI GCWGC 6 cut(s) 375, 410, 632, 840, 927, 930
ApoI RAATTY 2 cut(s) 676, 898
AspLEI GCGC 3 cut(s) 45, 119, 238
AspS9I GGNCC 4 cut(s) 168, 289, 350, 737
AsuHPI GGTGA 6 cut(s) 73, 139, 253, 271, 548, 608
AvaI CYCGRG 2 cut(s) 200, 488
AvaII GGWCC 2 cut(s) 289, 737
BaeGI GKGCMC 2 cut(s) 254, 340
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 2 cut(s) 116, 251
BanII GRGCYC 2 cut(s) 11, 279
BbsI GAAGAC 1 cut(s) 875
Bbv12I GWGCWC 3 cut(s) 11, 41, 279
BbvI GCAGC 6 cut(s) 387, 422, 619, 827, 939, 942
BccI CCATC 4 cut(s) 532, 677, 809, 953
BceAI ACGGC 2 cut(s) 82, 337
BciVI GTATCC 1 cut(s) 812
BcoDI GTCTC 4 cut(s) 50, 226, 491, 635
BfaI CTAG 4 cut(s) 341, 557, 830, 944
BfmI CTRYAG 1 cut(s) 972
BfoI RGCGCY 1 cut(s) 120
BfrI CTTAAG 1 cut(s) 545
BfuI GTATCC 1 cut(s) 812
BisI GCNGC 8 cut(s) 376, 411, 633, 841, 928, 931, 1013, 1016
BlsI GCNGC 8 cut(s) 377, 412, 634, 842, 929, 932, 1014, 1017
Bme18I GGWCC 2 cut(s) 289, 737
BmeRI GACNNNNNGTC 1 cut(s) 31
BmeT110I CYCGRG 2 cut(s) 200, 488
BmgT120I GGNCC 4 cut(s) 168, 289, 350, 737
BmiI GGNNCC 3 cut(s) 70, 118, 253
BmsI GCATC 4 cut(s) 733, 835, 877, 887
BpiI GAAGAC 1 cut(s) 875
BplI GAGNNNNNCTC 4 cut(s) 23, 55, 194, 226
BpmI CTGGAG 2 cut(s) 585, 621
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 4 cut(s) 201, 282, 370, 1013
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 959, 999
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 775
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 4 cut(s) 201, 282, 370, 1013
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 3 cut(s) 261, 959, 999
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 3 cut(s) 148, 417, 861
BseNI ACTGG 1 cut(s) 775
BseRI GAGGAG 1 cut(s) 934
BseSI GKGCMC 2 cut(s) 254, 340
BseXI GCAGC 6 cut(s) 387, 422, 619, 827, 939, 942
BsgI GTGCAG 1 cut(s) 445
Bsh1236I CGCG 2 cut(s) 43, 1015
BshFI GGCC 4 cut(s) 104, 170, 352, 1012
BshNI GGYRCC 2 cut(s) 116, 251
BsiHKAI GWGCWC 3 cut(s) 11, 41, 279
BsiHKCI CYCGRG 2 cut(s) 200, 488
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 3 cut(s) 261, 959, 999
BsmAI GTCTC 4 cut(s) 50, 226, 491, 635
BsmBI CGTCTC 2 cut(s) 226, 491
BsnI GGCC 4 cut(s) 104, 170, 352, 1012
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 2 cut(s) 200, 488
Bsp1286I GDGCHC 5 cut(s) 11, 41, 254, 279, 340
Bsp143I GATC 2 cut(s) 48, 331
BspACI CCGC 6 cut(s) 76, 156, 348, 1003, 1013, 1015
BspANI GGCC 4 cut(s) 104, 170, 352, 1012
BspCNI CTCAG 3 cut(s) 147, 418, 860
BspFNI CGCG 2 cut(s) 43, 1015
BspLI GGNNCC 3 cut(s) 70, 118, 253
BspQI GCTCTTC 1 cut(s) 400
BspT107I GGYRCC 2 cut(s) 116, 251
BspTI CTTAAG 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 775
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 4 cut(s) 201, 282, 370, 1013
BssMI GATC 2 cut(s) 48, 331
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 6 cut(s) 61, 151, 191, 302, 466, 517
Bst6I CTCTTC 3 cut(s) 400, 828, 911
BstACI GRCGYC 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 545
BstC8I GCNNGC 5 cut(s) 7, 41, 350, 954, 1001
BstDEI CTNAG 3 cut(s) 134, 426, 847
BstDSI CCRYGG 1 cut(s) 1013
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 2 cut(s) 43, 1015
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 3 cut(s) 45, 119, 238
BstKTI GATC 2 cut(s) 51, 334
BstMAI GTCTC 4 cut(s) 50, 226, 491, 635
BstMBI GATC 2 cut(s) 48, 331
BstMWI GCNNNNNNNGC 6 cut(s) 51, 75, 303, 949, 983, 1009
BstNSI RCATGY 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 972
BstSLI GKGCMC 2 cut(s) 254, 340
BstUI CGCG 2 cut(s) 43, 1015
BstV1I GCAGC 6 cut(s) 387, 422, 619, 827, 939, 942
BstV2I GAAGAC 1 cut(s) 875
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 4 cut(s) 104, 170, 352, 1012
BtgI CCRYGG 1 cut(s) 1013
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 4 cut(s) 307, 462, 855, 970
Cac8I GCNNGC 5 cut(s) 7, 41, 350, 954, 1001
CfoI GCGC 3 cut(s) 45, 119, 238
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 4 cut(s) 168, 289, 350, 737
Cfr42I CCGCGG 1 cut(s) 1016
Csp6I GTAC 3 cut(s) 355, 367, 518
CviAII CATG 3 cut(s) 112, 379, 532
CviQI GTAC 3 cut(s) 355, 367, 518
DdeI CTNAG 3 cut(s) 134, 426, 847
DinI GGCGCC 1 cut(s) 118
DpnI GATC 2 cut(s) 50, 333
DpnII GATC 2 cut(s) 48, 331
DraI TTTAAA 1 cut(s) 610
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 3 cut(s) 400, 828, 911
Eam1105I GACNNNNNGTC 1 cut(s) 31
EarI CTCTTC 3 cut(s) 400, 828, 911
Ecl136II GAGCTC 2 cut(s) 9, 277
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 2 cut(s) 11, 279
Eco31I GGTCTC 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 289, 737
Eco53kI GAGCTC 2 cut(s) 9, 277
Eco57I CTGAAG 1 cut(s) 887
Eco88I CYCGRG 2 cut(s) 200, 488
EcoICRI GAGCTC 2 cut(s) 9, 277
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 2 cut(s) 11, 279
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 2 cut(s) 226, 491
FaeI CATG 3 cut(s) 115, 382, 535
FatI CATG 3 cut(s) 111, 378, 531
FauI CCCGC 1 cut(s) 341
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 8 cut(s) 376, 411, 633, 841, 928, 931, 1013, 1016
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 2 cut(s) 11, 279
Fsp4HI GCNGC 8 cut(s) 376, 411, 633, 841, 928, 931, 1013, 1016
FspBI CTAG 4 cut(s) 341, 557, 830, 944
GlaI GCGC 3 cut(s) 44, 118, 237
GluI GCNGC 8 cut(s) 376, 411, 633, 841, 928, 931, 1013, 1016
GsuI CTGGAG 2 cut(s) 585, 621
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 4 cut(s) 104, 170, 352, 1012
HapII CCGG 1 cut(s) 120
HhaI GCGC 3 cut(s) 45, 119, 238
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 3 cut(s) 115, 382, 535
Hin6I GCGC 3 cut(s) 43, 117, 236
HinP1I GCGC 3 cut(s) 43, 117, 236
HincII GTYRAC 2 cut(s) 64, 717
HindII GTYRAC 2 cut(s) 64, 717
HinfI GANTC 4 cut(s) 32, 443, 560, 980
HpaII CCGG 1 cut(s) 120
HphI GGTGA 6 cut(s) 73, 139, 253, 271, 548, 608
Hpy166II GTNNAC 6 cut(s) 64, 217, 289, 357, 717, 772
Hpy188I TCNGA 8 cut(s) 404, 427, 479, 498, 529, 659, 682, 814
Hpy188III TCNNGA 5 cut(s) 488, 557, 564, 638, 830
Hpy8I GTNNAC 6 cut(s) 64, 217, 289, 357, 717, 772
Hpy99I CGWCG 5 cut(s) 29, 32, 155, 191, 581
HpyAV CCTTC 3 cut(s) 154, 533, 643
HpyCH4III ACNGT 6 cut(s) 61, 151, 191, 302, 466, 517
HpyCH4IV ACGT 3 cut(s) 219, 359, 579
HpyCH4V TGCA 7 cut(s) 319, 462, 509, 746, 808, 878, 890
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 75, 303, 949, 983, 1009
HpyF3I CTNAG 3 cut(s) 134, 426, 847
HpySE526I ACGT 3 cut(s) 219, 359, 579
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 3 cut(s) 115, 382, 535
HspAI GCGC 3 cut(s) 43, 117, 236
KasI GGCGCC 1 cut(s) 116
KspI CCGCGG 1 cut(s) 1016
Kzo9I GATC 2 cut(s) 48, 331
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 5 cut(s) 74, 215, 566, 640, 859
Lsp1109I GCAGC 6 cut(s) 387, 422, 619, 827, 939, 942
LweI GCATC 4 cut(s) 733, 835, 877, 887
MaeI CTAG 4 cut(s) 341, 557, 830, 944
MaeII ACGT 3 cut(s) 219, 359, 579
MaeIII GTNAC 3 cut(s) 158, 386, 852
MalI GATC 2 cut(s) 50, 333
MbiI CCGCTC 1 cut(s) 348
MboI GATC 2 cut(s) 48, 331
MboII GAAGA 4 cut(s) 417, 845, 880, 928
MhlI GDGCHC 5 cut(s) 11, 41, 254, 279, 340
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 7 cut(s) 503, 510, 605, 676, 723, 757, 898
MluNI TGGCCA 1 cut(s) 104
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 7 cut(s) 196, 241, 255, 365, 856, 912, 1002
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
MseI TTAA 4 cut(s) 546, 609, 726, 1024
MslI CAYNNNNRTG 2 cut(s) 257, 284
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 1015
MspCI CTTAAG 1 cut(s) 545
MspI CCGG 1 cut(s) 120
MvnI CGCG 2 cut(s) 43, 1015
MwoI GCNNNNNNNGC 6 cut(s) 51, 75, 303, 949, 983, 1009
NarI GGCGCC 1 cut(s) 117
NdeII GATC 2 cut(s) 48, 331
NlaIII CATG 3 cut(s) 115, 382, 535
NlaIV GGNNCC 3 cut(s) 70, 118, 253
NspI RCATGY 1 cut(s) 382
OliI CACNNNNGTG 2 cut(s) 257, 284
PaeR7I CTCGAG 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 3 cut(s) 443, 560, 980
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 8 cut(s) 377, 412, 634, 842, 929, 932, 1014, 1017
PleI GAGTC 1 cut(s) 40
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 40
Psp124BI GAGCTC 2 cut(s) 11, 279
PspN4I GGNNCC 3 cut(s) 70, 118, 253
PspPI GGNCC 4 cut(s) 168, 289, 350, 737
RsaI GTAC 3 cut(s) 356, 368, 519
RsaNI GTAC 3 cut(s) 355, 367, 518
RseI CAYNNNNRTG 2 cut(s) 257, 284
SacI GAGCTC 2 cut(s) 11, 279
SacII CCGCGG 1 cut(s) 1016
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 4 cut(s) 546, 609, 726, 1024
SatI GCNGC 8 cut(s) 376, 411, 633, 841, 928, 931, 1013, 1016
Sau3AI GATC 2 cut(s) 48, 331
Sau96I GGNCC 4 cut(s) 168, 289, 350, 737
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 5 cut(s) 11, 41, 254, 279, 340
SfaNI GCATC 4 cut(s) 733, 835, 877, 887
SfcI CTRYAG 1 cut(s) 972
SfoI GGCGCC 1 cut(s) 118
Sfr274I CTCGAG 1 cut(s) 488
Sfr303I CCGCGG 1 cut(s) 1016
SgrBI CCGCGG 1 cut(s) 1016
SinI GGWCC 2 cut(s) 289, 737
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 2 cut(s) 257, 284
SmlI CTYRAG 2 cut(s) 488, 545
SmoI CTYRAG 2 cut(s) 488, 545
Sse9I AATT 7 cut(s) 503, 510, 605, 676, 723, 757, 898
SsiI CCGC 6 cut(s) 76, 156, 348, 1003, 1013, 1015
SspDI GGCGCC 1 cut(s) 116
SspI AATATT 1 cut(s) 766
SspMI CTAG 4 cut(s) 341, 557, 830, 944
SstI GAGCTC 2 cut(s) 11, 279
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 6 cut(s) 61, 151, 191, 302, 466, 517
TaiI ACGT 3 cut(s) 222, 362, 582
TaqI TCGA 4 cut(s) 11, 47, 273, 489
TasI AATT 7 cut(s) 503, 510, 605, 676, 723, 757, 898
TauI GCSGC 2 cut(s) 1015, 1018
TfiI GAWTC 3 cut(s) 443, 560, 980
Tru1I TTAA 4 cut(s) 546, 609, 726, 1024
Tru9I TTAA 4 cut(s) 546, 609, 726, 1024
TscAI CASTG 4 cut(s) 307, 469, 855, 970
TseI GCWGC 6 cut(s) 375, 410, 632, 840, 927, 930
TspDTI ATGAA 1 cut(s) 220
TspGWI ACGGA 2 cut(s) 202, 214
TspRI CASTG 4 cut(s) 307, 469, 855, 970
Van91I CCANNNNNTGG 1 cut(s) 959
Vha464I CTTAAG 1 cut(s) 545
VpaK11BI GGWCC 2 cut(s) 289, 737
XapI RAATTY 2 cut(s) 676, 898
XbaI TCTAGA 2 cut(s) 556, 829
XceI RCATGY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 4 cut(s) 341, 557, 830, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.