Rorug01G0341400

BTB POZ and MATH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007015
Physical Location & Seq
Reverse (-)
45945600 .. 45945986
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0341400.1

Sequence Viewer

Length: 387 bp
ATGGAGAAGGGAAGGTTAATCCGTCTGAATGATCACTGGGTCTCCGTTGCCATAGACAATCCTGATTCTTTTGGGGATGTTGGGTACCTAGACTTCAGGTTTCTCGATCAACTCTTACCCCACTGCTCCAAAGACCAGTTAATTCACATCGAGAAGTGCACAAAAGGTACAGACCTGACTCCGATCACCGATAAGCTTTGGAAGAAGTTCTTCGAGAGAGACTTCGGTGGCAAAGCCACTGATGAGGTGATCGAGAAGATGAAGATCAAGAAAGTGAGCTTCAAGTGGTCAGAGTTGTACCAGGAAAAGTCCAAGAGAGTGGAAAAGGCTGAGAAAGAAGTCGGTGAAAGGTTGAAGAAGCTGTATGAGAAAGAAGCCGCTCGGTGA

Protein Analysis

128

Amino Acids

15.11

Weight (kDa)

8.77

Isoelectric Point (pI)

23.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 25 - 126 1e-21 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AccBSI CCGCTC 1 cut(s) 380
AciI CCGC 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 79
AfaI GTAC 3 cut(s) 86, 169, 299
AgsI TTSAA 2 cut(s) 283, 355
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 3 cut(s) 196, 279, 361
AluI AGCT 3 cut(s) 196, 279, 361
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 46, 213
Alw44I GTGCAC 1 cut(s) 157
ApaLI GTGCAC 1 cut(s) 157
Asp700I GAANNNNTTC 2 cut(s) 206, 209
Asp718I GGTACC 1 cut(s) 84
AsuHPI GGTGA 3 cut(s) 178, 259, 356
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
Bbv12I GWGCWC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 46, 213
BfaI CTAG 1 cut(s) 89
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 2 cut(s) 41, 136
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 263
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 41, 136
BseSI GKGCMC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 46, 213
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 5 cut(s) 31, 106, 183, 249, 264
BspACI CCGC 1 cut(s) 378
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 41, 136
BssMI GATC 5 cut(s) 31, 106, 183, 249, 264
Bst2UI CCWGG 1 cut(s) 302
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 5 cut(s) 34, 109, 186, 252, 267
BstMAI GTCTC 2 cut(s) 46, 213
BstMBI GATC 5 cut(s) 31, 106, 183, 249, 264
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 161
BstXI CCANNNNNNTGG 1 cut(s) 319
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 3 cut(s) 34, 121, 237
Csp6I GTAC 3 cut(s) 85, 168, 298
CviJI RGCY 6 cut(s) 196, 236, 279, 329, 361, 377
CviKI_1 RGCY 6 cut(s) 196, 236, 279, 329, 361, 377
CviQI GTAC 3 cut(s) 85, 168, 298
DdeI CTNAG 1 cut(s) 330
DpnI GATC 5 cut(s) 33, 108, 185, 251, 266
DpnII GATC 5 cut(s) 31, 106, 183, 249, 264
Eco31I GGTCTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 300
FaiI YATR 2 cut(s) 53, 366
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 378
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 65, 178
HphI GGTGA 3 cut(s) 178, 259, 356
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 3 cut(s) 27, 183, 292
Hpy188III TCNNGA 6 cut(s) 62, 104, 151, 214, 253, 268
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 330
KpnI GGTACC 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 5 cut(s) 31, 106, 183, 249, 264
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 7 cut(s) 22, 75, 82, 149, 188, 287, 314
MaeI CTAG 1 cut(s) 89
MalI GATC 5 cut(s) 33, 108, 185, 251, 266
MbiI CCGCTC 1 cut(s) 380
MboI GATC 5 cut(s) 31, 106, 183, 249, 264
MboII GAAGA 5 cut(s) 202, 214, 268, 274, 367
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 1 cut(s) 141
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 1 cut(s) 238
MroXI GAANNNNTTC 2 cut(s) 206, 209
MseI TTAA 2 cut(s) 17, 140
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeII GATC 5 cut(s) 31, 106, 183, 249, 264
NlaIV GGNNCC 1 cut(s) 86
PdmI GAANNNNTTC 2 cut(s) 206, 209
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 86
RsaI GTAC 3 cut(s) 86, 169, 299
RsaNI GTAC 3 cut(s) 85, 168, 298
SaqAI TTAA 2 cut(s) 17, 140
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 5 cut(s) 31, 106, 183, 249, 264
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 161
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 378
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 300
TaqI TCGA 4 cut(s) 105, 150, 213, 252
TasI AATT 1 cut(s) 141
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 17, 140
Tru9I TTAA 2 cut(s) 17, 140
TscAI CASTG 3 cut(s) 41, 128, 244
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 2 cut(s) 11, 34
TspRI CASTG 3 cut(s) 41, 128, 244
VneI GTGCAC 1 cut(s) 157
XmnI GAANNNNTTC 2 cut(s) 206, 209
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.