Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00073

Orthogroup ID

OG0007015

Physical Location & Seq

Genomic Coordinates Forward (+)

579 .. 3779

Gene Structure 3201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGTGAAGGTCTTAAGGCTTTTCTAGATTCTGGAGCTGGTTGCGACGTAGTTTTTCATGTTGGTGATGAACAATTTAAAGCTCACAAGTTGATACTTGCTGCTCGTTCTCCTGTATTCAAAGCACAGTTTTTTGGACACCTTGGGGATTCGAGTGTAGATAAAGTAGTCGTGAAGGATGTTGAGCCCTTTATCTTCAAGGCAATGCTTCTGTTTATTTACGCGGACAAACTTCCTGATATACGTGAAGTTACAGGTTCATCATCTTTGTGCACATTCACTGTCATGGTGCAGCATCTGTTGGCTGCTGCAGACCTTTATAACCTAGAGCGACTGAAGTTGCTGTGTGAATCGAAGTTGTGTGAAGAAATCACTACTGAAACAGTGGCAACCACACTGGCCCTTGCTGAGCAGCATCACTGTCCACAGCTGAAGGCTGTGTGTCTAAAATTTGCAGCAAAGTCGACAAACTTGGGAGCTGTAATGCAGTCAGATGGATACAAGCATCTAGAAGAGAGCTGCCCCTCAGTGTTACAGGAGCTACTAAAGACATTTGCATCAGTTGATGCAAATGAAAATTCAAGTTCAAGTAAGAAGAGGAGTGGCAGCAGCATATATGGGCTAGACTTGCCAGCAGATGGCAGTGGGGCTGTAGCAGAATCAGCAAATCCCAATGGCAGGCGGTTGAGGCCGCGGCGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019222 GO:0031323 GO:0031396 GO:0031399 GO:0032268 GO:0033554 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0104004 GO:1903320

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB MATH

Protein Analysis

234

Amino Acids

25.42

Weight (kDa)

6.38

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	6 - 122	7.3e-24	BTB/POZ domain
BACK_BPM_SPOP	PF24570	128 - 182	4.1e-29	BPM/SPOP, BACK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39760 AT2G39760 AT2G39760 AT2G39760
fragaria_vesca	FvH4_7g23081 FvH4_7g23081
malus_domestica	MD01G1139500.v1.1 MD07G1203900.v1.1
prunus_persica	Prupe.2G240000_v2.0.a1 Prupe.2G240000_v2.0.a1 Prupe.2G240000_v2.0.a1
pyrus_communis	pycom01g16010 pycom07g19050
rosa_chinensis	RchiOBHm_Chr1g0368341
rosa_laevigata	RLG00000027218
rosa_multiflora	Rmu_sc0002709.1_g000047
rosa_roxburghii	Rroxscaffold_4G00288630
rosa_rugosa	Rorug01G0341300 Rorug01G0341400
rosa_samantha	Rh1AG347900 Rh1BG310900 Rh1CG326300 Rh1DG342700
rosa_wichuraiana	Rw0G002390 Rw1G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	464
AccII	CGCG	2 cut(s)	224, 694
AciI	CCGC	4 cut(s)	224, 682, 692, 694
AcsI	RAATTY	2 cut(s)	449, 577
AcuI	CTGAAG	2 cut(s)	356, 452
AfiI	CCNNNNNNNGG	2 cut(s)	638, 678
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	4 cut(s)	121, 199, 582, 588
AluBI	AGCT	6 cut(s)	38, 83, 430, 479, 519, 541
AluI	AGCT	6 cut(s)	38, 83, 430, 479, 519, 541
Alw21I	GWGCWC	1 cut(s)	275
Alw44I	GTGCAC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	2 cut(s)	399, 689
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	9 cut(s)	101, 292, 305, 308, 412, 455, 519, 606, 609
ApoI	RAATTY	2 cut(s)	449, 577
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	17, 77
BaeGI	GKGCMC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	9 cut(s)	88, 292, 295, 304, 424, 467, 506, 618, 621
BccI	CCATC	2 cut(s)	488, 632
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciVI	GTATCC	1 cut(s)	491
BfaI	CTAG	4 cut(s)	26, 326, 509, 623
BfmI	CTRYAG	2 cut(s)	309, 651
BfrI	CTTAAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	491
BlpI	GCTNAGC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	400
BmsI	GCATC	5 cut(s)	304, 424, 514, 556, 566
BpmI	CTGGAG	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	142, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	638, 678
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	142, 692
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	638, 678
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	399, 540
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	613
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	9 cut(s)	88, 292, 295, 304, 424, 467, 506, 618, 621
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	224, 694
BshFI	GGCC	2 cut(s)	401, 691
BsiHKAI	GWGCWC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	638, 678
BsnI	GGCC	2 cut(s)	401, 691
Bsp1286I	GDGCHC	2 cut(s)	189, 275
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	4 cut(s)	224, 682, 692, 694
BspANI	GGCC	2 cut(s)	401, 691
BspCNI	CTCAG	2 cut(s)	400, 539
BspFNI	CGCG	2 cut(s)	224, 694
BspMAI	CTGCAG	1 cut(s)	313
BspTI	CTTAAG	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	142, 692
BssT1I	CCWWGG	1 cut(s)	142
Bst4CI	ACNGT	4 cut(s)	129, 283, 385, 422
Bst6I	CTCTTC	2 cut(s)	507, 590
BstAFI	CTTAAG	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	633, 680
BstDEI	CTNAG	2 cut(s)	408, 526
BstDSI	CCRYGG	1 cut(s)	692
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	224, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	628, 662, 688
BstSFI	CTRYAG	2 cut(s)	309, 651
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	2 cut(s)	224, 694
BstV1I	GCAGC	9 cut(s)	88, 292, 295, 304, 424, 467, 506, 618, 621
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	401, 691
BtgI	CCRYGG	1 cut(s)	692
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	6 cut(s)	279, 390, 395, 418, 534, 649
Cac8I	GCNNGC	2 cut(s)	633, 680
CaiI	CAGNNNCTG	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	400
Cfr42I	CCGCGG	1 cut(s)	695
CviAII	CATG	2 cut(s)	59, 286
DdeI	CTNAG	2 cut(s)	408, 526
DraI	TTTAAA	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	507, 590
EarI	CTCTTC	2 cut(s)	507, 590
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	356, 452
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	62, 289
FaiI	YATR	7 cut(s)	60, 242, 287, 321, 614, 616, 618
FatI	CATG	2 cut(s)	58, 285
FblI	GTMKAC	1 cut(s)	464
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	189
FspBI	CTAG	4 cut(s)	26, 326, 509, 623
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	401, 691
Hin1II	CATG	2 cut(s)	62, 289
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	4 cut(s)	29, 149, 350, 659
HphI	GGTGA	2 cut(s)	17, 77
Hpy166II	GTNNAC	3 cut(s)	273, 425, 465
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	5 cut(s)	26, 33, 172, 236, 509
Hpy8I	GTNNAC	3 cut(s)	273, 425, 465
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	169, 427
HpyCH4III	ACNGT	4 cut(s)	129, 283, 385, 422
HpyCH4IV	ACGT	2 cut(s)	48, 244
HpyCH4V	TGCA	7 cut(s)	273, 292, 311, 455, 487, 557, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	628, 662, 688
HpyF3I	CTNAG	2 cut(s)	408, 526
HpySE526I	ACGT	2 cut(s)	48, 244
Hsp92II	CATG	2 cut(s)	62, 289
KspI	CCGCGG	1 cut(s)	695
LmnI	GCTCC	3 cut(s)	35, 476, 538
LpnPI	CCDG	9 cut(s)	18, 24, 126, 240, 249, 383, 521, 645, 664
Lsp1109I	GCAGC	9 cut(s)	88, 292, 295, 304, 424, 467, 506, 618, 621
LweI	GCATC	5 cut(s)	304, 424, 514, 556, 566
MaeI	CTAG	4 cut(s)	26, 326, 509, 623
MaeII	ACGT	2 cut(s)	48, 244
MaeIII	GTNAC	2 cut(s)	250, 531
MboII	GAAGA	4 cut(s)	187, 377, 524, 607
MhlI	GDGCHC	2 cut(s)	189, 275
MluCI	AATT	3 cut(s)	74, 449, 577
MnlI	CCTC	3 cut(s)	535, 591, 681
MseI	TTAA	3 cut(s)	15, 78, 703
MslI	CAYNNNNRTG	3 cut(s)	63, 268, 284
MspA1I	CMGCKG	2 cut(s)	430, 694
MspCI	CTTAAG	1 cut(s)	14
MvnI	CGCG	2 cut(s)	224, 694
MwoI	GCNNNNNNNGC	3 cut(s)	628, 662, 688
NlaIII	CATG	2 cut(s)	62, 289
PfeI	GAWTC	4 cut(s)	29, 149, 350, 659
PflMI	CCANNNNNTGG	1 cut(s)	638
Ppu21I	YACGTR	1 cut(s)	245
PsiI	TTATAA	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	430
RseI	CAYNNNNRTG	3 cut(s)	63, 268, 284
SacII	CCGCGG	1 cut(s)	695
SalI	GTCGAC	1 cut(s)	463
SaqAI	TTAA	3 cut(s)	15, 78, 703
Sau96I	GGNCC	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	189, 275
SfaNI	GCATC	5 cut(s)	304, 424, 514, 556, 566
SfcI	CTRYAG	2 cut(s)	309, 651
Sfr303I	CCGCGG	1 cut(s)	695
SgrBI	CCGCGG	1 cut(s)	695
SmiMI	CAYNNNNRTG	3 cut(s)	63, 268, 284
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	74, 449, 577
SsiI	CCGC	4 cut(s)	224, 682, 692, 694
SspMI	CTAG	4 cut(s)	26, 326, 509, 623
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	4 cut(s)	129, 283, 385, 422
TaiI	ACGT	2 cut(s)	51, 247
TaqI	TCGA	3 cut(s)	152, 353, 464
TasI	AATT	3 cut(s)	74, 449, 577
TauI	GCSGC	2 cut(s)	694, 697
TfiI	GAWTC	4 cut(s)	29, 149, 350, 659
Tru1I	TTAA	3 cut(s)	15, 78, 703
Tru9I	TTAA	3 cut(s)	15, 78, 703
TscAI	CASTG	6 cut(s)	286, 390, 402, 425, 534, 649
TseI	GCWGC	9 cut(s)	101, 292, 305, 308, 412, 455, 519, 606, 609
TspDTI	ATGAA	4 cut(s)	47, 84, 249, 588
TspRI	CASTG	6 cut(s)	286, 390, 402, 425, 534, 649
Van91I	CCANNNNNTGG	1 cut(s)	638
Vha464I	CTTAAG	1 cut(s)	14
VneI	GTGCAC	1 cut(s)	271
XapI	RAATTY	2 cut(s)	449, 577
XbaI	TCTAGA	2 cut(s)	25, 508
XmiI	GTMKAC	1 cut(s)	464
XspI	CTAG	4 cut(s)	26, 326, 509, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.