RLG00000027218

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
9664643 .. 9668416
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027218

Sequence Viewer

Length: 1314 bp
ATGCCACCGATTCAAAAATTCTCCCTCCGCGGCGCGCAATTGGGTAAACCCTCCTCCTCCTCCTCCCCCTCCTCCGCCATGGCGAGCTCGAAGCCCAAGCCCGACGACGAGTCGTGCTCGCGCTCGATCAGCGAGACCGTCAACGGCTCCCACCGCTTCACCATAAAGGGCTATTCTTTAGCCAAAGGCATGGGCGCCGGTAAATACATACTCAGCGACACCTTCACCGTCGGCGGTTACGATTGGGCCATTTACTTTTACCCCGACGGGAAAAACCCCGAGGATAGCTCCGTCTACGTCTCCGTTTTCATTGCGCTGGTGAGTGAGGGCACCGATGTGAGGGCTTTGTTCGAGCTCACCTTGGTGGACCAGAGCAACAGTGGCAAGGACAAGGTGCATAGCCACTTTGATCGTGCCCTAGAGAGCGGGCCGTACACGTTGAAGTACCGAGGCAGCATGTGGGGTTACAAGCGATTTTTCAGAAGAGCAGCCCTTGAAACTTCTGAGTTTTTAAAGGATGATTCCCTTGTGTTGAACTGCACTGTTGGAGTTGTCAGAACTCGTCTCGAGTGTCCAAAGCAATTTGCAATTACTGTACCACCATCAGACATGGGTGAAGGTCTTAAGGCTTTTCTAGATTCTGGAGCTGGTTGCGACGTAGTTTTTCAGGTTGGTGATGAGCAATTTAAAGCTCACAAGTTGATACTTGCTGCTCGTTCTCCTGTATTCAAAGCACAGTTTTTTGGACACCTTGGGGATTCGAGTGTAGATAAAGTAGTCGTGAAGGATGTTGAGCCCTTTATCTTCAAGGCAATGCTTCTGTTTATTTATGCGGACAAACTTCCTGATATACGTGAAGTTACAGGTTCATCATCTTTGTGCACATTCACTGTCATGGTGCAGCATCTGTTGGCTGCTGCAGACCTGTATAACCTAGAGCGACTGAAGTTGCTGTGTGAATCGAAGTTGTGTGAAGAAATCACTACTGAAACAGTGGCAACTACACTGGCCCTTGCTGAGCAGCATCACTGTCCACAGCTGAAGGCTGTGTGTCTAAAATTTGCAGCAAAGTCGACAAACTTGGGAGCTGTAATGCAGTCAGATGGATACAAGCATCTAGAAGAGAGCTGCCCCTCAGTGTTACAGGAGCTACTGAAGACATTTGCATCAGTTGATGCAAATGAAAATTCAAGTTCAAGTAAGAAGAGGAGTGGCAGCAGCATATATGGGCTAGACTTGCCAGCAGATGGCAGTGGGGCTGTAGCAGAATCAGCAAATCCCAATGGCAGGCGGTTGAGGCCGCGGCGATATTAA

Protein Analysis

438

Amino Acids

47.7

Weight (kDa)

7.54

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 50 - 182 5.8e-31 MATH domain
BTB PF00651 209 - 325 1.5e-23 BTB/POZ domain
BACK_BPM_SPOP PF24570 331 - 385 1.1e-28 BPM/SPOP, BACK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 194, 329
AccB7I CCANNNNNTGG 1 cut(s) 1247
AccBSI CCGCTC 1 cut(s) 426
AccI GTMKAC 2 cut(s) 294, 1073
AccII CGCG 4 cut(s) 30, 35, 121, 1303
AcsI RAATTY 3 cut(s) 17, 1058, 1186
AcuI CTGAAG 3 cut(s) 965, 1061, 1175
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 3 cut(s) 434, 446, 597
AfiI CCNNNNNNNGG 3 cut(s) 339, 1247, 1287
AflII CTTAAG 1 cut(s) 623
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 8 cut(s) 14, 442, 497, 535, 730, 808, 1191, 1197
AhdI GACNNNNNGTC 1 cut(s) 109
AleI CACNNNNGTG 2 cut(s) 335, 362
AluBI AGCT 9 cut(s) 87, 288, 355, 647, 692, 1039, 1088, 1128, 1150
AluI AGCT 9 cut(s) 87, 288, 355, 647, 692, 1039, 1088, 1128, 1150
Alw21I GWGCWC 4 cut(s) 89, 119, 357, 884
Alw26I GTCTC 3 cut(s) 128, 304, 569
Alw44I GTGCAC 1 cut(s) 880
AlwNI CAGNNNCTG 1 cut(s) 907
Ama87I CYCGRG 2 cut(s) 278, 566
AoxI GGCC 4 cut(s) 246, 428, 1008, 1298
ApaLI GTGCAC 1 cut(s) 880
ApoI RAATTY 3 cut(s) 17, 1058, 1186
AspLEI GCGC 5 cut(s) 35, 37, 123, 197, 316
AspS9I GGNCC 4 cut(s) 246, 367, 428, 1009
AsuHPI GGTGA 6 cut(s) 151, 217, 331, 349, 626, 686
AvaI CYCGRG 2 cut(s) 278, 566
AvaII GGWCC 1 cut(s) 367
BaeGI GKGCMC 3 cut(s) 332, 418, 884
BanI GGYRCC 2 cut(s) 194, 329
BanII GRGCYC 3 cut(s) 89, 357, 798
BbsI GAAGAC 1 cut(s) 1163
Bbv12I GWGCWC 4 cut(s) 89, 119, 357, 884
BccI CCATC 3 cut(s) 610, 1097, 1241
BceAI ACGGC 2 cut(s) 160, 415
BcgI CGANNNNNNTGC 2 cut(s) 1053, 1087
BciVI GTATCC 1 cut(s) 1100
BcoDI GTCTC 3 cut(s) 128, 304, 569
BfaI CTAG 5 cut(s) 419, 635, 935, 1118, 1232
BfmI CTRYAG 2 cut(s) 918, 1260
BfoI RGCGCY 1 cut(s) 198
BfrI CTTAAG 1 cut(s) 623
BfuI GTATCC 1 cut(s) 1100
BlpI GCTNAGC 1 cut(s) 1017
Bme18I GGWCC 1 cut(s) 367
BmeRI GACNNNNNGTC 1 cut(s) 109
BmeT110I CYCGRG 2 cut(s) 278, 566
BmgT120I GGNCC 4 cut(s) 246, 367, 428, 1009
BmiI GGNNCC 3 cut(s) 148, 196, 331
BmsI GCATC 5 cut(s) 913, 1033, 1123, 1165, 1175
BpiI GAAGAC 1 cut(s) 1163
BplI GAGNNNNNCTC 4 cut(s) 101, 133, 272, 304
BpmI CTGGAG 1 cut(s) 663
Bpu1102I GCTNAGC 1 cut(s) 1017
BsaAI YACGTR 1 cut(s) 854
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 7 cut(s) 28, 78, 279, 360, 448, 751, 1301
Bsc4I CCNNNNNNNGG 3 cut(s) 339, 1247, 1287
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 1011
Bse3DI GCAATG 2 cut(s) 309, 819
BseDI CCNNGG 7 cut(s) 28, 78, 279, 360, 448, 751, 1301
BseGI GGATG 2 cut(s) 523, 793
BseLI CCNNNNNNNGG 3 cut(s) 339, 1247, 1287
BseMI GCAATG 2 cut(s) 309, 819
BseMII CTCAG 4 cut(s) 226, 495, 1008, 1149
BseNI ACTGG 1 cut(s) 1011
BsePI GCGCGC 1 cut(s) 33
BseRI GAGGAG 6 cut(s) 43, 46, 49, 52, 61, 1222
BseSI GKGCMC 3 cut(s) 332, 418, 884
BsgI GTGCAG 2 cut(s) 523, 920
Bsh1236I CGCG 4 cut(s) 30, 35, 121, 1303
BshFI GGCC 4 cut(s) 248, 430, 1010, 1300
BshNI GGYRCC 2 cut(s) 194, 329
BsiHKAI GWGCWC 4 cut(s) 89, 119, 357, 884
BsiHKCI CYCGRG 2 cut(s) 278, 566
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 339, 1247, 1287
BsmAI GTCTC 3 cut(s) 128, 304, 569
BsmBI CGTCTC 2 cut(s) 304, 569
BsnI GGCC 4 cut(s) 248, 430, 1010, 1300
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 2 cut(s) 278, 566
Bsp1286I GDGCHC 7 cut(s) 89, 119, 332, 357, 418, 798, 884
Bsp143I GATC 2 cut(s) 126, 409
Bsp1720I GCTNAGC 1 cut(s) 1017
Bsp19I CCATGG 1 cut(s) 78
BspANI GGCC 4 cut(s) 248, 430, 1010, 1300
BspCNI CTCAG 4 cut(s) 225, 496, 1009, 1148
BspFNI CGCG 4 cut(s) 30, 35, 121, 1303
BspLI GGNNCC 3 cut(s) 148, 196, 331
BspMAI CTGCAG 1 cut(s) 922
BspQI GCTCTTC 1 cut(s) 478
BspT107I GGYRCC 2 cut(s) 194, 329
BspTI CTTAAG 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 426
BsrDI GCAATG 2 cut(s) 309, 819
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 1 cut(s) 1011
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 7 cut(s) 28, 78, 279, 360, 448, 751, 1301
BssHII GCGCGC 1 cut(s) 33
BssMI GATC 2 cut(s) 126, 409
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 3 cut(s) 78, 360, 751
Bst4CI ACNGT 9 cut(s) 139, 229, 380, 544, 595, 738, 892, 994, 1031
Bst6I CTCTTC 3 cut(s) 478, 1116, 1199
BstACI GRCGYC 1 cut(s) 195
BstAFI CTTAAG 1 cut(s) 623
BstBAI YACGTR 1 cut(s) 854
BstC8I GCNNGC 6 cut(s) 35, 85, 119, 428, 1242, 1289
BstDEI CTNAG 4 cut(s) 212, 504, 1017, 1135
BstDSI CCRYGG 3 cut(s) 28, 78, 1301
BstF5I GGATG 2 cut(s) 523, 793
BstFNI CGCG 4 cut(s) 30, 35, 121, 1303
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 5 cut(s) 35, 37, 123, 197, 316
BstKTI GATC 2 cut(s) 129, 412
BstMAI GTCTC 3 cut(s) 128, 304, 569
BstMBI GATC 2 cut(s) 126, 409
BstMWI GCNNNNNNNGC 6 cut(s) 129, 153, 381, 1237, 1271, 1297
BstNSI RCATGY 1 cut(s) 460
BstSFI CTRYAG 2 cut(s) 918, 1260
BstSLI GKGCMC 3 cut(s) 332, 418, 884
BstUI CGCG 4 cut(s) 30, 35, 121, 1303
BstV2I GAAGAC 1 cut(s) 1163
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuI GTATCC 1 cut(s) 1100
BsuRI GGCC 4 cut(s) 248, 430, 1010, 1300
BtgI CCRYGG 3 cut(s) 28, 78, 1301
BtsCI GGATG 2 cut(s) 523, 793
BtsI GCAGTG 1 cut(s) 1258
BtsIMutI CAGTG 8 cut(s) 385, 540, 888, 999, 1004, 1027, 1143, 1258
Cac8I GCNNGC 6 cut(s) 35, 85, 119, 428, 1242, 1289
CaiI CAGNNNCTG 1 cut(s) 907
CfoI GCGC 5 cut(s) 35, 37, 123, 197, 316
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 4 cut(s) 246, 367, 428, 1009
Cfr42I CCGCGG 2 cut(s) 31, 1304
Csp6I GTAC 3 cut(s) 433, 445, 596
CviAII CATG 5 cut(s) 79, 190, 457, 610, 895
CviQI GTAC 3 cut(s) 433, 445, 596
DdeI CTNAG 4 cut(s) 212, 504, 1017, 1135
DinI GGCGCC 1 cut(s) 196
DpnI GATC 2 cut(s) 128, 411
DpnII GATC 2 cut(s) 126, 409
DraI TTTAAA 2 cut(s) 513, 688
DriI GACNNNNNGTC 1 cut(s) 109
Eam1104I CTCTTC 3 cut(s) 478, 1116, 1199
Eam1105I GACNNNNNGTC 1 cut(s) 109
EarI CTCTTC 3 cut(s) 478, 1116, 1199
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 2 cut(s) 87, 355
Eco130I CCWWGG 3 cut(s) 78, 360, 751
Eco24I GRGCYC 3 cut(s) 89, 357, 798
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 367
Eco53kI GAGCTC 2 cut(s) 87, 355
Eco57I CTGAAG 3 cut(s) 965, 1061, 1175
Eco88I CYCGRG 2 cut(s) 278, 566
EcoICRI GAGCTC 2 cut(s) 87, 355
EcoT14I CCWWGG 3 cut(s) 78, 360, 751
EcoT38I GRGCYC 3 cut(s) 89, 357, 798
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
ErhI CCWWGG 3 cut(s) 78, 360, 751
Esp3I CGTCTC 2 cut(s) 304, 569
FaeI CATG 5 cut(s) 82, 193, 460, 613, 898
FatI CATG 5 cut(s) 78, 189, 456, 609, 894
FauI CCCGC 1 cut(s) 419
FblI GTMKAC 2 cut(s) 294, 1073
FokI GGATG 2 cut(s) 530, 800
FriOI GRGCYC 3 cut(s) 89, 357, 798
FspBI CTAG 5 cut(s) 419, 635, 935, 1118, 1232
GlaI GCGC 5 cut(s) 34, 36, 122, 196, 315
GsuI CTGGAG 1 cut(s) 663
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 4 cut(s) 248, 430, 1010, 1300
HapII CCGG 1 cut(s) 198
HhaI GCGC 5 cut(s) 35, 37, 123, 197, 316
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 5 cut(s) 82, 193, 460, 613, 898
Hin6I GCGC 5 cut(s) 33, 35, 121, 195, 314
HinP1I GCGC 5 cut(s) 33, 35, 121, 195, 314
HincII GTYRAC 2 cut(s) 142, 1074
HindII GTYRAC 2 cut(s) 142, 1074
HinfI GANTC 7 cut(s) 10, 110, 521, 638, 758, 959, 1268
HpaII CCGG 1 cut(s) 198
HphI GGTGA 6 cut(s) 151, 217, 331, 349, 626, 686
Hpy166II GTNNAC 8 cut(s) 47, 142, 295, 367, 435, 882, 1034, 1074
Hpy188I TCNGA 5 cut(s) 482, 505, 557, 607, 1102
Hpy188III TCNNGA 6 cut(s) 566, 635, 642, 781, 845, 1118
Hpy8I GTNNAC 8 cut(s) 47, 142, 295, 367, 435, 882, 1034, 1074
Hpy99I CGWCG 5 cut(s) 107, 110, 233, 269, 659
HpyAV CCTTC 4 cut(s) 232, 611, 778, 1036
HpyCH4III ACNGT 9 cut(s) 139, 229, 380, 544, 595, 738, 892, 994, 1031
HpyCH4IV ACGT 4 cut(s) 297, 437, 657, 853
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 153, 381, 1237, 1271, 1297
HpyF3I CTNAG 4 cut(s) 212, 504, 1017, 1135
HpySE526I ACGT 4 cut(s) 297, 437, 657, 853
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 5 cut(s) 82, 193, 460, 613, 898
HspAI GCGC 5 cut(s) 33, 35, 121, 195, 314
KasI GGCGCC 1 cut(s) 194
KspI CCGCGG 2 cut(s) 31, 1304
Kzo9I GATC 2 cut(s) 126, 409
LguI GCTCTTC 1 cut(s) 478
LmnI GCTCC 5 cut(s) 152, 293, 644, 1085, 1147
LweI GCATC 5 cut(s) 913, 1033, 1123, 1165, 1175
MaeI CTAG 5 cut(s) 419, 635, 935, 1118, 1232
MaeII ACGT 4 cut(s) 297, 437, 657, 853
MaeIII GTNAC 4 cut(s) 236, 464, 859, 1140
MalI GATC 2 cut(s) 128, 411
MbiI CCGCTC 1 cut(s) 426
MboI GATC 2 cut(s) 126, 409
MboII GAAGA 6 cut(s) 495, 796, 986, 1133, 1168, 1216
MfeI CAATTG 1 cut(s) 38
MhlI GDGCHC 7 cut(s) 89, 119, 332, 357, 418, 798, 884
MluCI AATT 7 cut(s) 17, 38, 581, 588, 683, 1058, 1186
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 526
MseI TTAA 4 cut(s) 512, 624, 687, 1312
MslI CAYNNNNRTG 4 cut(s) 335, 362, 877, 893
MspA1I CMGCKG 3 cut(s) 30, 1039, 1303
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 38
MvnI CGCG 4 cut(s) 30, 35, 121, 1303
MwoI GCNNNNNNNGC 6 cut(s) 129, 153, 381, 1237, 1271, 1297
NarI GGCGCC 1 cut(s) 195
NcoI CCATGG 1 cut(s) 78
NdeII GATC 2 cut(s) 126, 409
NlaIII CATG 5 cut(s) 82, 193, 460, 613, 898
NlaIV GGNNCC 3 cut(s) 148, 196, 331
NspI RCATGY 1 cut(s) 460
OliI CACNNNNGTG 2 cut(s) 335, 362
PaeR7I CTCGAG 1 cut(s) 566
PauI GCGCGC 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 6 cut(s) 10, 521, 638, 758, 959, 1268
PflMI CCANNNNNTGG 1 cut(s) 1247
PleI GAGTC 1 cut(s) 118
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 854
Psp124BI GAGCTC 2 cut(s) 89, 357
PspN4I GGNNCC 3 cut(s) 148, 196, 331
PspPI GGNCC 4 cut(s) 246, 367, 428, 1009
PstI CTGCAG 1 cut(s) 922
PstNI CAGNNNCTG 1 cut(s) 907
PteI GCGCGC 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 1039
RsaI GTAC 3 cut(s) 434, 446, 597
RsaNI GTAC 3 cut(s) 433, 445, 596
RseI CAYNNNNRTG 4 cut(s) 335, 362, 877, 893
SacI GAGCTC 2 cut(s) 89, 357
SacII CCGCGG 2 cut(s) 31, 1304
SalI GTCGAC 1 cut(s) 1072
SapI GCTCTTC 1 cut(s) 478
SaqAI TTAA 4 cut(s) 512, 624, 687, 1312
Sau3AI GATC 2 cut(s) 126, 409
Sau96I GGNCC 4 cut(s) 246, 367, 428, 1009
SchI GAGTC 1 cut(s) 119
SduI GDGCHC 7 cut(s) 89, 119, 332, 357, 418, 798, 884
SfaNI GCATC 5 cut(s) 913, 1033, 1123, 1165, 1175
SfcI CTRYAG 2 cut(s) 918, 1260
SfoI GGCGCC 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 566
Sfr303I CCGCGG 2 cut(s) 31, 1304
SgrBI CCGCGG 2 cut(s) 31, 1304
SinI GGWCC 1 cut(s) 367
SlaI CTCGAG 1 cut(s) 566
SmiMI CAYNNNNRTG 4 cut(s) 335, 362, 877, 893
SmlI CTYRAG 2 cut(s) 566, 623
SmoI CTYRAG 2 cut(s) 566, 623
Sse9I AATT 7 cut(s) 17, 38, 581, 588, 683, 1058, 1186
SspDI GGCGCC 1 cut(s) 194
SspMI CTAG 5 cut(s) 419, 635, 935, 1118, 1232
SstI GAGCTC 2 cut(s) 89, 357
StyI CCWWGG 3 cut(s) 78, 360, 751
TaaI ACNGT 9 cut(s) 139, 229, 380, 544, 595, 738, 892, 994, 1031
TaiI ACGT 4 cut(s) 300, 440, 660, 856
TaqI TCGA 7 cut(s) 89, 125, 351, 567, 761, 962, 1073
TasI AATT 7 cut(s) 17, 38, 581, 588, 683, 1058, 1186
TauI GCSGC 3 cut(s) 33, 1303, 1306
TfiI GAWTC 6 cut(s) 10, 521, 638, 758, 959, 1268
Tru1I TTAA 4 cut(s) 512, 624, 687, 1312
Tru9I TTAA 4 cut(s) 512, 624, 687, 1312
TscAI CASTG 8 cut(s) 385, 547, 895, 999, 1011, 1034, 1143, 1258
TspDTI ATGAA 3 cut(s) 298, 858, 1197
TspGWI ACGGA 2 cut(s) 280, 292
TspRI CASTG 8 cut(s) 385, 547, 895, 999, 1011, 1034, 1143, 1258
Van91I CCANNNNNTGG 1 cut(s) 1247
Vha464I CTTAAG 1 cut(s) 623
VneI GTGCAC 1 cut(s) 880
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 3 cut(s) 17, 1058, 1186
XbaI TCTAGA 2 cut(s) 634, 1117
XceI RCATGY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 566
XmiI GTMKAC 2 cut(s) 294, 1073
XspI CTAG 5 cut(s) 419, 635, 935, 1118, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.