Rmu_sc0002709.1_g000047

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002709.1
Physical Location & Seq
Reverse (-)
167013 .. 171503
4491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002709.1_g000047.1.cds

Sequence Viewer

Length: 1311 bp
atgccaccgattcaaaaattctccctccgcggcgcgcaattgggtaaaccctcctcctcctcctcctcctccgccatggcgagctcgaagcccaagcccgacgacgagtcgtgctcgcgctcgatcagcgagaccgtcaacggctcccaccgcttcaccataaagggctattctttggccaaaggcatgggcgccggtaaatacatactcagcgacaccttcaccgtcggcggttacgattgggccatttacttttaccccgacggtaaaaaccccgaggatagctccgtctacgtctccgttttcattgcgctggtgagtgagggcaccgatgtcagggctttgttcgagctcaccttggtggaccagagcaacagtggcaaggacaaggtgcatagccactttgatcgtgccctagagagcgggccgtacacgttgaagtaccgaggcagcatgtggggttacaagcgatttttcagaagagcagcccttgaaacgtccgagtttctaaaggatgattcccttgtgttgaactgcactgttggagttgtcagaactcgtctcgagtgtccaaaacaatttgcaattactgtaccaccatcagacatgggtgaaggtcttaaggcttttctagattctggagctggttgcgacgtagtttttcaggttggtgatgagcaatttaaagctcacaagttgatacttgctgctcgttctcctgtattcaaagcacagttttttggacaccttggggattcgagtgtagataaagtagtcgtgaaggatgttgagccctttatcttcaaggcaatgcttctgtttatttacgcggacaaacttcctgatatacgtgaagttacaggttcatcatctttgtgcacattcactgtcatggtgcagcatctgttggctgctgcagacctttataacctagagcgactgaagttgctgtgtgaatcgaagttgtgtgaagaaatcactactgaaacagtggcaaccacactggcccttgctgagcagcatcactgtccacagctgaaggctgtgtgtctaaaatttgcagcaaagtcgacaaacttgggagctgtaatgcagtcagatggatacaagcatctagaagagagctgcccctcggtgttacaggagctactaaagacatttgcatcagttgatgcaaatgaaaattcaagttcaagtaagaagaggagtggcagcagcatatatgggctagacttgccagcagatggcagtggggctgtagcagaatcagcaaatcccaatggcaggcggttgaggccgcggcgatattaa

Protein Analysis

436

Amino Acids

47.6

Weight (kDa)

7.54

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 927
AccB1I GGYRCC 2 cut(s) 191, 326
AccB7I CCANNNNNTGG 1 cut(s) 1244
AccBSI CCGCTC 1 cut(s) 423
AccI GTMKAC 2 cut(s) 291, 1070
AccII CGCG 5 cut(s) 30, 35, 118, 830, 1300
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 3 cut(s) 17, 1055, 1183
AcuI CTGAAG 2 cut(s) 962, 1058
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 3 cut(s) 431, 443, 594
AfiI CCNNNNNNNGG 3 cut(s) 336, 1244, 1284
AflII CTTAAG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 8 cut(s) 14, 439, 494, 532, 727, 805, 1188, 1194
AhdI GACNNNNNGTC 1 cut(s) 106
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 9 cut(s) 84, 285, 352, 644, 689, 1036, 1085, 1125, 1147
AluI AGCT 9 cut(s) 84, 285, 352, 644, 689, 1036, 1085, 1125, 1147
Alw21I GWGCWC 4 cut(s) 86, 116, 354, 881
Alw26I GTCTC 3 cut(s) 125, 301, 566
Alw44I GTGCAC 1 cut(s) 877
AlwNI CAGNNNCTG 1 cut(s) 904
Ama87I CYCGRG 2 cut(s) 275, 563
AoxI GGCC 5 cut(s) 177, 243, 425, 1005, 1295
ApaLI GTGCAC 1 cut(s) 877
ApoI RAATTY 3 cut(s) 17, 1055, 1183
AspLEI GCGC 5 cut(s) 35, 37, 120, 194, 313
AspS9I GGNCC 4 cut(s) 243, 364, 425, 1006
AsuHPI GGTGA 6 cut(s) 148, 214, 328, 346, 623, 683
AvaI CYCGRG 2 cut(s) 275, 563
AvaII GGWCC 1 cut(s) 364
BaeGI GKGCMC 3 cut(s) 329, 415, 881
BalI TGGCCA 1 cut(s) 179
BanI GGYRCC 2 cut(s) 191, 326
BanII GRGCYC 3 cut(s) 86, 354, 795
Bbv12I GWGCWC 4 cut(s) 86, 116, 354, 881
BccI CCATC 3 cut(s) 607, 1094, 1238
BceAI ACGGC 2 cut(s) 157, 412
BcgI CGANNNNNNTGC 2 cut(s) 1050, 1084
BciVI GTATCC 1 cut(s) 1097
BcoDI GTCTC 3 cut(s) 125, 301, 566
BfaI CTAG 5 cut(s) 416, 632, 932, 1115, 1229
BfmI CTRYAG 2 cut(s) 915, 1257
BfoI RGCGCY 1 cut(s) 195
BfrI CTTAAG 1 cut(s) 620
BfuI GTATCC 1 cut(s) 1097
BlpI GCTNAGC 1 cut(s) 1014
Bme18I GGWCC 1 cut(s) 364
BmeRI GACNNNNNGTC 1 cut(s) 106
BmeT110I CYCGRG 2 cut(s) 275, 563
BmgT120I GGNCC 4 cut(s) 243, 364, 425, 1006
BmiI GGNNCC 3 cut(s) 145, 193, 328
BmsI GCATC 5 cut(s) 910, 1030, 1120, 1162, 1172
BplI GAGNNNNNCTC 4 cut(s) 98, 130, 269, 301
BpmI CTGGAG 1 cut(s) 660
Bpu1102I GCTNAGC 1 cut(s) 1014
BsaAI YACGTR 1 cut(s) 851
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 8 cut(s) 28, 75, 276, 357, 445, 748, 1131, 1298
Bsc4I CCNNNNNNNGG 3 cut(s) 336, 1244, 1284
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 1008
Bse3DI GCAATG 2 cut(s) 306, 816
BseDI CCNNGG 8 cut(s) 28, 75, 276, 357, 445, 748, 1131, 1298
BseGI GGATG 2 cut(s) 520, 790
BseLI CCNNNNNNNGG 3 cut(s) 336, 1244, 1284
BseMI GCAATG 2 cut(s) 306, 816
BseMII CTCAG 2 cut(s) 223, 1005
BseNI ACTGG 1 cut(s) 1008
BsePI GCGCGC 1 cut(s) 33
BseRI GAGGAG 7 cut(s) 43, 46, 49, 52, 55, 58, 1219
BseSI GKGCMC 3 cut(s) 329, 415, 881
BsgI GTGCAG 2 cut(s) 520, 917
Bsh1236I CGCG 5 cut(s) 30, 35, 118, 830, 1300
BshFI GGCC 5 cut(s) 179, 245, 427, 1007, 1297
BshNI GGYRCC 2 cut(s) 191, 326
BsiHKAI GWGCWC 4 cut(s) 86, 116, 354, 881
BsiHKCI CYCGRG 2 cut(s) 275, 563
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 3 cut(s) 336, 1244, 1284
BsmAI GTCTC 3 cut(s) 125, 301, 566
BsmBI CGTCTC 2 cut(s) 301, 566
BsnI GGCC 5 cut(s) 179, 245, 427, 1007, 1297
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 2 cut(s) 275, 563
Bsp1286I GDGCHC 7 cut(s) 86, 116, 329, 354, 415, 795, 881
Bsp143I GATC 2 cut(s) 123, 406
Bsp1720I GCTNAGC 1 cut(s) 1014
Bsp19I CCATGG 1 cut(s) 75
BspANI GGCC 5 cut(s) 179, 245, 427, 1007, 1297
BspCNI CTCAG 2 cut(s) 222, 1006
BspFNI CGCG 5 cut(s) 30, 35, 118, 830, 1300
BspLI GGNNCC 3 cut(s) 145, 193, 328
BspMAI CTGCAG 1 cut(s) 919
BspQI GCTCTTC 1 cut(s) 475
BspT107I GGYRCC 2 cut(s) 191, 326
BspTI CTTAAG 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 423
BsrDI GCAATG 2 cut(s) 306, 816
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 1008
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 8 cut(s) 28, 75, 276, 357, 445, 748, 1131, 1298
BssHII GCGCGC 1 cut(s) 33
BssMI GATC 2 cut(s) 123, 406
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 3 cut(s) 75, 357, 748
Bst6I CTCTTC 3 cut(s) 475, 1113, 1196
BstACI GRCGYC 1 cut(s) 192
BstAFI CTTAAG 1 cut(s) 620
BstBAI YACGTR 1 cut(s) 851
BstC8I GCNNGC 6 cut(s) 35, 82, 116, 425, 1239, 1286
BstDEI CTNAG 2 cut(s) 209, 1014
BstDSI CCRYGG 3 cut(s) 28, 75, 1298
BstF5I GGATG 2 cut(s) 520, 790
BstFNI CGCG 5 cut(s) 30, 35, 118, 830, 1300
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 5 cut(s) 35, 37, 120, 194, 313
BstKTI GATC 2 cut(s) 126, 409
BstMAI GTCTC 3 cut(s) 125, 301, 566
BstMBI GATC 2 cut(s) 123, 406
BstMWI GCNNNNNNNGC 6 cut(s) 126, 150, 378, 1234, 1268, 1294
BstNSI RCATGY 1 cut(s) 457
BstSFI CTRYAG 2 cut(s) 915, 1257
BstSLI GKGCMC 3 cut(s) 329, 415, 881
BstUI CGCG 5 cut(s) 30, 35, 118, 830, 1300
BstXI CCANNNNNNTGG 1 cut(s) 187
BsuI GTATCC 1 cut(s) 1097
BsuRI GGCC 5 cut(s) 179, 245, 427, 1007, 1297
BtgI CCRYGG 3 cut(s) 28, 75, 1298
BtsCI GGATG 2 cut(s) 520, 790
BtsI GCAGTG 1 cut(s) 1255
BtsIMutI CAGTG 7 cut(s) 382, 537, 885, 996, 1001, 1024, 1255
Cac8I GCNNGC 6 cut(s) 35, 82, 116, 425, 1239, 1286
CaiI CAGNNNCTG 1 cut(s) 904
CfoI GCGC 5 cut(s) 35, 37, 120, 194, 313
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 4 cut(s) 243, 364, 425, 1006
Cfr42I CCGCGG 2 cut(s) 31, 1301
Csp6I GTAC 3 cut(s) 430, 442, 593
CviAII CATG 5 cut(s) 76, 187, 454, 607, 892
CviQI GTAC 3 cut(s) 430, 442, 593
DdeI CTNAG 2 cut(s) 209, 1014
DinI GGCGCC 1 cut(s) 193
DpnI GATC 2 cut(s) 125, 408
DpnII GATC 2 cut(s) 123, 406
DraI TTTAAA 1 cut(s) 685
DriI GACNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 3 cut(s) 475, 1113, 1196
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 3 cut(s) 475, 1113, 1196
EciI GGCGGA 1 cut(s) 61
Ecl136II GAGCTC 2 cut(s) 84, 352
Eco130I CCWWGG 3 cut(s) 75, 357, 748
Eco24I GRGCYC 3 cut(s) 86, 354, 795
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 364
Eco53kI GAGCTC 2 cut(s) 84, 352
Eco57I CTGAAG 2 cut(s) 962, 1058
Eco88I CYCGRG 2 cut(s) 275, 563
EcoICRI GAGCTC 2 cut(s) 84, 352
EcoT14I CCWWGG 3 cut(s) 75, 357, 748
EcoT38I GRGCYC 3 cut(s) 86, 354, 795
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
ErhI CCWWGG 3 cut(s) 75, 357, 748
Esp3I CGTCTC 2 cut(s) 301, 566
FaeI CATG 5 cut(s) 79, 190, 457, 610, 895
FatI CATG 5 cut(s) 75, 186, 453, 606, 891
FauI CCCGC 1 cut(s) 416
FblI GTMKAC 2 cut(s) 291, 1070
FokI GGATG 2 cut(s) 527, 797
FriOI GRGCYC 3 cut(s) 86, 354, 795
FspBI CTAG 5 cut(s) 416, 632, 932, 1115, 1229
GlaI GCGC 5 cut(s) 34, 36, 119, 193, 312
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 5 cut(s) 179, 245, 427, 1007, 1297
HapII CCGG 1 cut(s) 195
HhaI GCGC 5 cut(s) 35, 37, 120, 194, 313
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 5 cut(s) 79, 190, 457, 610, 895
Hin6I GCGC 5 cut(s) 33, 35, 118, 192, 311
HinP1I GCGC 5 cut(s) 33, 35, 118, 192, 311
HincII GTYRAC 2 cut(s) 139, 1071
HindII GTYRAC 2 cut(s) 139, 1071
HinfI GANTC 7 cut(s) 10, 107, 518, 635, 755, 956, 1265
HpaII CCGG 1 cut(s) 195
HphI GGTGA 6 cut(s) 148, 214, 328, 346, 623, 683
Hpy166II GTNNAC 8 cut(s) 47, 139, 292, 364, 432, 879, 1031, 1071
Hpy188I TCNGA 5 cut(s) 479, 502, 554, 604, 1099
Hpy188III TCNNGA 6 cut(s) 563, 632, 639, 778, 842, 1115
Hpy8I GTNNAC 8 cut(s) 47, 139, 292, 364, 432, 879, 1031, 1071
Hpy99I CGWCG 5 cut(s) 104, 107, 230, 266, 656
HpyAV CCTTC 4 cut(s) 229, 608, 775, 1033
HpyCH4IV ACGT 5 cut(s) 294, 434, 497, 654, 850
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 150, 378, 1234, 1268, 1294
HpyF3I CTNAG 2 cut(s) 209, 1014
HpySE526I ACGT 5 cut(s) 294, 434, 497, 654, 850
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 5 cut(s) 79, 190, 457, 610, 895
HspAI GCGC 5 cut(s) 33, 35, 118, 192, 311
KasI GGCGCC 1 cut(s) 191
KspI CCGCGG 2 cut(s) 31, 1301
Kzo9I GATC 2 cut(s) 123, 406
LguI GCTCTTC 1 cut(s) 475
LmnI GCTCC 5 cut(s) 149, 290, 641, 1082, 1144
LweI GCATC 5 cut(s) 910, 1030, 1120, 1162, 1172
MaeI CTAG 5 cut(s) 416, 632, 932, 1115, 1229
MaeII ACGT 5 cut(s) 294, 434, 497, 654, 850
MaeIII GTNAC 4 cut(s) 233, 461, 856, 1137
MalI GATC 2 cut(s) 125, 408
MbiI CCGCTC 1 cut(s) 423
MboI GATC 2 cut(s) 123, 406
MboII GAAGA 5 cut(s) 492, 793, 983, 1130, 1213
MfeI CAATTG 1 cut(s) 38
MhlI GDGCHC 7 cut(s) 86, 116, 329, 354, 415, 795, 881
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 7 cut(s) 17, 38, 578, 585, 680, 1055, 1183
MluNI TGGCCA 1 cut(s) 179
Mly113I GGCGCC 1 cut(s) 192
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 523
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 3 cut(s) 621, 684, 1309
MslI CAYNNNNRTG 3 cut(s) 359, 874, 890
Msp20I TGGCCA 1 cut(s) 179
MspA1I CMGCKG 3 cut(s) 30, 1036, 1300
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 38
MvnI CGCG 5 cut(s) 30, 35, 118, 830, 1300
MwoI GCNNNNNNNGC 6 cut(s) 126, 150, 378, 1234, 1268, 1294
NarI GGCGCC 1 cut(s) 192
NcoI CCATGG 1 cut(s) 75
NdeII GATC 2 cut(s) 123, 406
NlaIII CATG 5 cut(s) 79, 190, 457, 610, 895
NlaIV GGNNCC 3 cut(s) 145, 193, 328
NspI RCATGY 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 359
PaeR7I CTCGAG 1 cut(s) 563
PauI GCGCGC 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 6 cut(s) 10, 518, 635, 755, 956, 1265
PflMI CCANNNNNTGG 1 cut(s) 1244
PleI GAGTC 1 cut(s) 115
PluTI GGCGCC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 1 cut(s) 851
PsiI TTATAA 1 cut(s) 927
Psp124BI GAGCTC 2 cut(s) 86, 354
PspN4I GGNNCC 3 cut(s) 145, 193, 328
PspPI GGNCC 4 cut(s) 243, 364, 425, 1006
PstI CTGCAG 1 cut(s) 919
PstNI CAGNNNCTG 1 cut(s) 904
PteI GCGCGC 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 1036
RsaI GTAC 3 cut(s) 431, 443, 594
RsaNI GTAC 3 cut(s) 430, 442, 593
RseI CAYNNNNRTG 3 cut(s) 359, 874, 890
SacI GAGCTC 2 cut(s) 86, 354
SacII CCGCGG 2 cut(s) 31, 1301
SalI GTCGAC 1 cut(s) 1069
SapI GCTCTTC 1 cut(s) 475
SaqAI TTAA 3 cut(s) 621, 684, 1309
Sau3AI GATC 2 cut(s) 123, 406
Sau96I GGNCC 4 cut(s) 243, 364, 425, 1006
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 7 cut(s) 86, 116, 329, 354, 415, 795, 881
SfaNI GCATC 5 cut(s) 910, 1030, 1120, 1162, 1172
SfcI CTRYAG 2 cut(s) 915, 1257
SfoI GGCGCC 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 563
Sfr303I CCGCGG 2 cut(s) 31, 1301
SgrBI CCGCGG 2 cut(s) 31, 1301
SinI GGWCC 1 cut(s) 364
SlaI CTCGAG 1 cut(s) 563
SmiMI CAYNNNNRTG 3 cut(s) 359, 874, 890
SmlI CTYRAG 2 cut(s) 563, 620
SmoI CTYRAG 2 cut(s) 563, 620
Sse9I AATT 7 cut(s) 17, 38, 578, 585, 680, 1055, 1183
SspDI GGCGCC 1 cut(s) 191
SspMI CTAG 5 cut(s) 416, 632, 932, 1115, 1229
SstI GAGCTC 2 cut(s) 86, 354
StyI CCWWGG 3 cut(s) 75, 357, 748
TaiI ACGT 5 cut(s) 297, 437, 500, 657, 853
TaqI TCGA 7 cut(s) 86, 122, 348, 564, 758, 959, 1070
TasI AATT 7 cut(s) 17, 38, 578, 585, 680, 1055, 1183
TauI GCSGC 3 cut(s) 33, 1300, 1303
TfiI GAWTC 6 cut(s) 10, 518, 635, 755, 956, 1265
Tru1I TTAA 3 cut(s) 621, 684, 1309
Tru9I TTAA 3 cut(s) 621, 684, 1309
TscAI CASTG 7 cut(s) 382, 544, 892, 996, 1008, 1031, 1255
TspDTI ATGAA 3 cut(s) 295, 855, 1194
TspGWI ACGGA 2 cut(s) 277, 289
TspRI CASTG 7 cut(s) 382, 544, 892, 996, 1008, 1031, 1255
Van91I CCANNNNNTGG 1 cut(s) 1244
Vha464I CTTAAG 1 cut(s) 620
VneI GTGCAC 1 cut(s) 877
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 3 cut(s) 17, 1055, 1183
XbaI TCTAGA 2 cut(s) 631, 1114
XceI RCATGY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XhoI CTCGAG 1 cut(s) 563
XmiI GTMKAC 2 cut(s) 291, 1070
XspI CTAG 5 cut(s) 416, 632, 932, 1115, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.