Rorug01G0341300

BTB POZ and MATH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007015
Physical Location & Seq
Reverse (-)
45944735 .. 45945349
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0341300.1

Sequence Viewer

Length: 615 bp
ATGGAGAAGGGAAGGTTAATCCGTCTGAATGATCACTGGGTCTCCGTTGCCATAGACAATCTTGATTCTTTTGGGGATGTTGGGTACCTAGACTTCAGGTTTCTCGATCAACTCTTACCCCACTGCTCCAAAGACCAGTTAATTCACATCGAGAAGTGCACAAAAGGTACAGACCTGACTCCGATCACCGATAAGCTTTGGAAGAAGTTCTTCGAGAGAGACTTTGGTGGCAAAGCCACTGATGAGGTGATCGAGAAGATGAAGATCAAGAAAGTGAGCTTCAAGTGGTCAGAGTTGTACCAGGAAAAGTCCAAGAGAGTGGAAAAGGCTGAGAAAGAAGTCGGTGAAAGGTTGAAGAAGCTGTATGAGAAAGAAGCCGCTCGGAAACAAAGCCGGCAGGTTAAGGTGTTGGACAAGGTTCCACCTTCTTCGTCAACCAACAACAGAAATGGCTCCAAGAAAGATAGCAAACTGATGAGCAGATTGAGGAAACAGCATCTGAATTGTCTGGAAATGAGAAATATTCAAGCTATGAAGATGAAGAGAACTGCTACCAACTATTCTGGTCTCATCAAAAGGCCAAGAACGACTATTCGACCTATGAACGTCTTTTGA

Protein Analysis

204

Amino Acids

23.95

Weight (kDa)

9.91

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 25 - 133 1.9e-23 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 388
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AccBSI CCGCTC 1 cut(s) 380
AciI CCGC 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 79
AfaI GTAC 3 cut(s) 86, 169, 299
AgsI TTSAA 3 cut(s) 283, 355, 527
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 4 cut(s) 196, 279, 361, 530
AluI AGCT 4 cut(s) 196, 279, 361, 530
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 3 cut(s) 46, 213, 572
Alw44I GTGCAC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 499
AoxI GGCC 1 cut(s) 578
ApaLI GTGCAC 1 cut(s) 157
Asp700I GAANNNNTTC 2 cut(s) 206, 209
Asp718I GGTACC 1 cut(s) 84
AsuHPI GGTGA 3 cut(s) 178, 259, 356
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
Bbv12I GWGCWC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 3 cut(s) 46, 213, 572
BfaI CTAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 3 cut(s) 86, 420, 454
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 263
BsaI GGTCTC 2 cut(s) 46, 572
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 41, 136
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 263
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 41, 136
BseSI GKGCMC 1 cut(s) 161
BshFI GGCC 1 cut(s) 580
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 394
BsmAI GTCTC 3 cut(s) 46, 213, 572
BsnI GGCC 1 cut(s) 580
Bso31I GGTCTC 2 cut(s) 46, 572
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 5 cut(s) 31, 106, 183, 249, 264
BspACI CCGC 1 cut(s) 378
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 86, 420, 454
BspMI ACCTGC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 2 cut(s) 46, 572
BsrBI CCGCTC 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 2 cut(s) 41, 136
BssAI RCCGGY 1 cut(s) 393
BssMI GATC 5 cut(s) 31, 106, 183, 249, 264
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 5 cut(s) 34, 109, 186, 252, 267
BstMAI GTCTC 3 cut(s) 46, 213, 572
BstMBI GATC 5 cut(s) 31, 106, 183, 249, 264
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 161
BstXI CCANNNNNNTGG 1 cut(s) 319
BsuRI GGCC 1 cut(s) 580
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 3 cut(s) 34, 121, 237
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 395
CaiI CAGNNNCTG 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 393
Csp6I GTAC 3 cut(s) 85, 168, 298
CviQI GTAC 3 cut(s) 85, 168, 298
DdeI CTNAG 1 cut(s) 330
DpnI GATC 5 cut(s) 33, 108, 185, 251, 266
DpnII GATC 5 cut(s) 31, 106, 183, 249, 264
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco31I GGTCTC 2 cut(s) 46, 572
Eco57I CTGAAG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 300
FaiI YATR 4 cut(s) 53, 366, 533, 602
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 1 cut(s) 580
HapII CCGG 1 cut(s) 394
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 65, 178
HpaII CCGG 1 cut(s) 394
HphI GGTGA 3 cut(s) 178, 259, 356
Hpy166II GTNNAC 2 cut(s) 159, 435
Hpy188I TCNGA 5 cut(s) 27, 183, 292, 384, 501
Hpy188III TCNNGA 7 cut(s) 62, 104, 151, 214, 253, 268, 509
Hpy8I GTNNAC 2 cut(s) 159, 435
HpyAV CCTTC 2 cut(s) 6, 435
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 606
KpnI GGTACC 1 cut(s) 88
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 5 cut(s) 31, 106, 183, 249, 264
LmnI GCTCC 2 cut(s) 131, 458
LweI GCATC 1 cut(s) 505
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 606
MalI GATC 5 cut(s) 33, 108, 185, 251, 266
MbiI CCGCTC 1 cut(s) 380
MboI GATC 5 cut(s) 31, 106, 183, 249, 264
MboII GAAGA 8 cut(s) 202, 214, 268, 274, 367, 420, 547, 553
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 141, 502
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 2 cut(s) 238, 480
MroNI GCCGGC 1 cut(s) 393
MroXI GAANNNNTTC 2 cut(s) 206, 209
MseI TTAA 3 cut(s) 17, 140, 402
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NaeI GCCGGC 1 cut(s) 395
NdeII GATC 5 cut(s) 31, 106, 183, 249, 264
NgoMIV GCCGGC 1 cut(s) 393
NlaIV GGNNCC 3 cut(s) 86, 420, 454
PdiI GCCGGC 1 cut(s) 395
PdmI GAANNNNTTC 2 cut(s) 206, 209
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 86, 420, 454
PstNI CAGNNNCTG 1 cut(s) 499
RsaI GTAC 3 cut(s) 86, 169, 299
RsaNI GTAC 3 cut(s) 85, 168, 298
SaqAI TTAA 3 cut(s) 17, 140, 402
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 5 cut(s) 31, 106, 183, 249, 264
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 161
SfaNI GCATC 1 cut(s) 505
Sse9I AATT 2 cut(s) 141, 502
SsiI CCGC 1 cut(s) 378
SspI AATATT 1 cut(s) 523
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 300
TaiI ACGT 1 cut(s) 609
TaqI TCGA 5 cut(s) 105, 150, 213, 252, 595
TasI AATT 2 cut(s) 141, 502
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 3 cut(s) 17, 140, 402
Tru9I TTAA 3 cut(s) 17, 140, 402
TscAI CASTG 3 cut(s) 41, 128, 244
TspDTI ATGAA 3 cut(s) 275, 548, 554
TspGWI ACGGA 2 cut(s) 11, 34
TspRI CASTG 3 cut(s) 41, 128, 244
VneI GTGCAC 1 cut(s) 157
XmnI GAANNNNTTC 2 cut(s) 206, 209
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.