Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006055

Physical Location & Seq

Genomic Coordinates Forward (+)

16588556 .. 16591032

Gene Structure 2477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAAGGCACTCATTCTTGTTGGAGGCTTCGGCACTCGCTTGAGACCATTGACTCTCAGTTTCCCAAAGCCCCTTGTTGATTTTGCTAATAAACCCATGATCCTTCATCAGATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGCCAGAGGTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATCACTTGCTCACAAGAGACCGAGCCACTAGGTACCGCTGGTCCTCTGGCTCTAGCGAGAGACAAATTGCTTGATGGATCTGGAGAGCCCTTCTTTGTTCTTAACAGTGATGTGATTAGTGAGTACCCTCTTAAAGAAATGCTTGAGTTTCACAAATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAGGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGAAGAGTGGAGAAGTTTGTGGAAAAGCCAAAACTGTATGTAGGTAACAAGATCAACGCTGGGATTTATCTTCTGAACCCATCTGTTCTTGATAAGATTGAGCTAAGACCGACTTCAATCGAAAAAGAGACTTTCCCTAAGATTGCAGCAGCGCAAGGGCTCTATGCTATGGTGCTACCAGGGTTTTGGATGGACATTGGGCAACCCCGTGACTACATAACGGGTTTGAGACTCTACTTAGACTCCCTTAGGAAGAAATCTCCTGCCAAATTAACCAGTGGGCCACACATAGTTGGGAATGTTCTTGTTGACGAAACCGCTACAATTGGGGAAGGATGTTTGATTGGACCAGACGTTGCCATTGGTCCAGGCTGCATTGTTGAGTCAGGAGTCAGACTCTCCCGATGCACGGTCATGCGTGGAGTCCGCATCAAGAAGCATGCGTGTATCTCGAGCAGTATCATCGGGTGGCACTCAACGGTTGGTCAATGGGCCAGGATCGAGAACATGACGATCCTCGGTGAGGATGTTCATGTGAGCGATGAGATCTATAGCAATGGAGGAGTTGTTTTGCCACACAAGGAGATCAAATCAAACATCTTGAAGCCAGAGATAGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004475 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005996 GO:0006073 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008905 GO:0009058 GO:0009059 GO:0009108 GO:0009110 GO:0009250 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016051 GO:0016053 GO:0016740 GO:0016772 GO:0016779 GO:0019752 GO:0019852 GO:0019853 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042364 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0046394 GO:0046677 GO:0050896 GO:0051186 GO:0051188 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060359 GO:0070568 GO:0071704 GO:0098542 GO:1901576 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110

Pfam Domains

Protein Families

Hexapep NTP_transferase

Protein Analysis

361

Amino Acids

39.58

Weight (kDa)

6.28

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	2 - 233	1.6e-60	Nucleotidyl transferase
NTP_transf_3	PF12804	3 - 138	6.4e-10	MobA-like NTP transferase domain
LbH_EIF2B	PF25084	241 - 337	1.3e-12	EIF2B subunit epsilon LbH domain
GMPPB_C	PF25087	251 - 360	1.6e-43	GMPPB C-terminal domain
Hexapep	PF00132	261 - 294	2.6e-06	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39770 AT2G39770 AT2G39770 AT3G55590
fragaria_vesca	FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380
malus_domestica	MD01G1139900.v1.1 MD07G1204200.v1.1
prunus_persica	Prupe.2G240500_v2.0.a1
pyrus_communis	pycom01g16040 pycom07g19080
rosa_chinensis	RchiOBHm_Chr1g0368511
rosa_laevigata	RLG00000027207
rosa_multiflora	Rmu_co8389653.1_g000001 Rmu_sc0006908.1_g000002 Rmu_sc0011394.1_g000010
rosa_roxburghii	Rroxscaffold_4G00288480
rosa_rugosa	Rorug01G0342400 Rorug01G0342500 Rorug01G0342500
rosa_samantha	Rh1AG349800 Rh1BG312900 Rh1CG327700 Rh1DG344400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	3 cut(s)	258, 780, 889
AclWI	GGATC	4 cut(s)	94, 307, 968, 970
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	2 cut(s)	256, 347
AfiI	CCNNNNNNNGG	2 cut(s)	871, 985
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	193, 579, 1066
AjnI	CCWGG	3 cut(s)	640, 829, 956
AluBI	AGCT	2 cut(s)	211, 565
AluI	AGCT	2 cut(s)	211, 565
Alw26I	GTCTC	6 cut(s)	37, 197, 233, 276, 584, 685
AlwI	GGATC	4 cut(s)	94, 307, 968, 970
Ama87I	CYCGRG	1 cut(s)	913
AoxI	GGCC	3 cut(s)	153, 743, 954
ApeKI	GCWGC	3 cut(s)	608, 611, 834
Asp718I	GGTACC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	616
AspS9I	GGNCC	5 cut(s)	263, 743, 809, 827, 954
AsuHPI	GGTGA	2 cut(s)	187, 995
AvaI	CYCGRG	1 cut(s)	913
AvaII	GGWCC	3 cut(s)	263, 809, 827
AxyI	CCTNAGG	1 cut(s)	710
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	312, 624
BbvI	GCAGC	3 cut(s)	620, 623, 821
BccI	CCATC	4 cut(s)	164, 290, 550, 646
BcgI	CGANNNNNNTGC	2 cut(s)	907, 941
BciT130I	CCWGG	3 cut(s)	642, 831, 958
BcoDI	GTCTC	6 cut(s)	37, 197, 233, 276, 584, 685
BfaI	CTAG	2 cut(s)	251, 275
BfmI	CTRYAG	1 cut(s)	1012
BfrI	CTTAAG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	1008
BisI	GCNGC	3 cut(s)	609, 612, 835
BlsI	GCNGC	3 cut(s)	610, 613, 836
Bme1390I	CCNGG	3 cut(s)	642, 831, 958
Bme18I	GGWCC	3 cut(s)	263, 809, 827
BmeT110I	CYCGRG	1 cut(s)	913
BmgT120I	GGNCC	5 cut(s)	263, 743, 809, 827, 954
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	3 cut(s)	642, 831, 958
BmsI	GCATC	3 cut(s)	168, 857, 900
BplI	GAGNNNNNCTC	2 cut(s)	843, 875
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	61, 386
BsaI	GGTCTC	3 cut(s)	37, 197, 233
BsaJI	CCNNGG	2 cut(s)	641, 979
BsaXI	ACNNNNNCTCC	6 cut(s)	429, 459, 689, 719, 1014, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	871, 985
Bse1I	ACTGG	2 cut(s)	466, 738
Bse21I	CCTNAGG	1 cut(s)	710
Bse3DI	GCAATG	1 cut(s)	1024
BseBI	CCWGG	3 cut(s)	642, 831, 958
BseDI	CCNNGG	2 cut(s)	641, 979
BseGI	GGATG	4 cut(s)	424, 657, 803, 994
BseLI	CCNNNNNNNGG	2 cut(s)	871, 985
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	2 cut(s)	466, 738
BseRI	GAGGAG	1 cut(s)	1038
BseXI	GCAGC	3 cut(s)	620, 623, 821
BseYI	CCCAGC	1 cut(s)	521
BshFI	GGCC	3 cut(s)	155, 745, 956
BshNI	GGYRCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	913
BslI	CCNNNNNNNGG	2 cut(s)	871, 985
BsmAI	GTCTC	6 cut(s)	37, 197, 233, 276, 584, 685
BsnI	GGCC	3 cut(s)	155, 745, 956
Bso31I	GGTCTC	3 cut(s)	37, 197, 233
BsoBI	CYCGRG	1 cut(s)	913
Bsp1286I	GDGCHC	2 cut(s)	312, 624
Bsp143I	GATC	7 cut(s)	99, 299, 513, 960, 975, 1008, 1047
BspACI	CCGC	3 cut(s)	258, 780, 889
BspANI	GGCC	3 cut(s)	155, 745, 956
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	4 cut(s)	94, 307, 968, 970
BspT107I	GGYRCC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	122
BspTNI	GGTCTC	3 cut(s)	37, 197, 233
BsrDI	GCAATG	1 cut(s)	1024
BsrI	ACTGG	2 cut(s)	466, 738
BssECI	CCNNGG	2 cut(s)	641, 979
BssMI	GATC	7 cut(s)	99, 299, 513, 960, 975, 1008, 1047
Bst2UI	CCWGG	3 cut(s)	642, 831, 958
Bst4CI	ACNGT	6 cut(s)	329, 386, 426, 498, 874, 943
Bst6I	CTCTTC	1 cut(s)	460
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	5 cut(s)	56, 566, 600, 700, 710
BstENI	CCTNNNNNAGG	1 cut(s)	983
BstF5I	GGATG	4 cut(s)	424, 657, 803, 994
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	7 cut(s)	102, 302, 516, 963, 978, 1011, 1050
BstMAI	GTCTC	6 cut(s)	37, 197, 233, 276, 584, 685
BstMBI	GATC	7 cut(s)	99, 299, 513, 960, 975, 1008, 1047
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	3 cut(s)	642, 831, 958
BstNSI	RCATGY	1 cut(s)	905
BstSCI	CCNGG	3 cut(s)	640, 829, 956
BstSFI	CTRYAG	1 cut(s)	1012
BstV1I	GCAGC	3 cut(s)	620, 623, 821
BstX2I	RGATCY	2 cut(s)	299, 1008
BstXI	CCANNNNNNTGG	1 cut(s)	648
BstYI	RGATCY	2 cut(s)	299, 1008
Bsu36I	CCTNAGG	1 cut(s)	710
BsuRI	GGCC	3 cut(s)	155, 745, 956
BtgZI	GCGATG	1 cut(s)	1017
BtsCI	GGATG	4 cut(s)	424, 657, 803, 994
BtsIMutI	CAGTG	3 cut(s)	334, 459, 745
Cac8I	GCNNGC	1 cut(s)	903
CfoI	GCGC	1 cut(s)	616
Cfr13I	GGNCC	5 cut(s)	263, 743, 809, 827, 954
Csp6I	GTAC	2 cut(s)	255, 346
CviAII	CATG	5 cut(s)	97, 877, 902, 970, 995
CviQI	GTAC	2 cut(s)	255, 346
DdeI	CTNAG	5 cut(s)	56, 566, 600, 700, 710
DpnI	GATC	7 cut(s)	101, 301, 515, 962, 977, 1010, 1049
DpnII	GATC	7 cut(s)	99, 299, 513, 960, 975, 1008, 1047
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
Eco24I	GRGCYC	2 cut(s)	312, 624
Eco31I	GGTCTC	3 cut(s)	37, 197, 233
Eco47I	GGWCC	3 cut(s)	263, 809, 827
Eco81I	CCTNAGG	1 cut(s)	710
Eco88I	CYCGRG	1 cut(s)	913
EcoNI	CCTNNNNNAGG	1 cut(s)	983
EcoRII	CCWGG	3 cut(s)	640, 829, 956
EcoT38I	GRGCYC	2 cut(s)	312, 624
FaeI	CATG	5 cut(s)	100, 880, 905, 973, 998
FalI	AAGNNNNNCTT	4 cut(s)	348, 380, 559, 591
FatI	CATG	5 cut(s)	96, 876, 901, 969, 994
Fnu4HI	GCNGC	3 cut(s)	609, 612, 835
FokI	GGATG	4 cut(s)	431, 664, 810, 1001
FriOI	GRGCYC	2 cut(s)	312, 624
Fsp4HI	GCNGC	3 cut(s)	609, 612, 835
FspBI	CTAG	2 cut(s)	251, 275
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	3 cut(s)	609, 612, 835
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	155, 745, 956
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	5 cut(s)	100, 880, 905, 973, 998
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	7 cut(s)	52, 693, 704, 845, 852, 858, 885
HphI	GGTGA	2 cut(s)	187, 995
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	3 cut(s)	111, 537, 857
Hpy188III	TCNNGA	9 cut(s)	190, 303, 551, 849, 864, 895, 913, 964, 1063
Hpy8I	GTNNAC	1 cut(s)	772
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	4 cut(s)	113, 187, 322, 788
HpyCH4III	ACNGT	6 cut(s)	329, 386, 426, 498, 874, 943
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	3 cut(s)	608, 837, 870
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	5 cut(s)	56, 566, 600, 700, 710
HpySE526I	ACGT	1 cut(s)	816
Hsp92II	CATG	5 cut(s)	100, 880, 905, 973, 998
HspAI	GCGC	1 cut(s)	614
KpnI	GGTACC	1 cut(s)	258
Kzo9I	GATC	7 cut(s)	99, 299, 513, 960, 975, 1008, 1047
Lsp1109I	GCAGC	3 cut(s)	620, 623, 821
LweI	GCATC	3 cut(s)	168, 857, 900
MaeI	CTAG	2 cut(s)	251, 275
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	3 cut(s)	406, 506, 671
MalI	GATC	7 cut(s)	101, 301, 515, 962, 977, 1010, 1049
MboI	GATC	7 cut(s)	99, 299, 513, 960, 975, 1008, 1047
MboII	GAAGA	4 cut(s)	464, 477, 524, 727
MfeI	CAATTG	1 cut(s)	786
MflI	RGATCY	2 cut(s)	299, 1008
MhlI	GDGCHC	2 cut(s)	312, 624
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	4 cut(s)	160, 287, 731, 786
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	7 cut(s)	46, 687, 698, 852, 854, 861, 894
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	9 cut(s)	17, 109, 166, 276, 360, 406, 979, 989, 1016
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	4 cut(s)	123, 324, 354, 734
MslI	CAYNNNNRTG	1 cut(s)	875
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	260
MspCI	CTTAAG	1 cut(s)	122
MspR9I	CCNGG	3 cut(s)	642, 831, 958
MunI	CAATTG	1 cut(s)	786
MvaI	CCWGG	3 cut(s)	642, 831, 958
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	7 cut(s)	99, 299, 513, 960, 975, 1008, 1047
NlaIII	CATG	5 cut(s)	100, 880, 905, 973, 998
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	671
NspI	RCATGY	1 cut(s)	905
PaeI	GCATGC	1 cut(s)	905
PaeR7I	CTCGAG	1 cut(s)	913
PkrI	GCNGC	3 cut(s)	610, 613, 836
PleI	GAGTC	7 cut(s)	46, 687, 698, 852, 853, 860, 893
PpsI	GAGTC	7 cut(s)	46, 687, 698, 852, 853, 860, 893
Psp6I	CCWGG	3 cut(s)	640, 829, 956
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	3 cut(s)	640, 829, 956
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	5 cut(s)	263, 743, 809, 827, 954
PsuI	RGATCY	2 cut(s)	299, 1008
RsaI	GTAC	2 cut(s)	256, 347
RsaNI	GTAC	2 cut(s)	255, 346
RseI	CAYNNNNRTG	1 cut(s)	875
SaqAI	TTAA	4 cut(s)	123, 324, 354, 734
SatI	GCNGC	3 cut(s)	609, 612, 835
Sau3AI	GATC	7 cut(s)	99, 299, 513, 960, 975, 1008, 1047
Sau96I	GGNCC	5 cut(s)	263, 743, 809, 827, 954
SchI	GAGTC	7 cut(s)	46, 687, 698, 852, 854, 861, 894
ScrFI	CCNGG	3 cut(s)	642, 831, 958
SduI	GDGCHC	2 cut(s)	312, 624
SetI	ASST	7 cut(s)	177, 213, 256, 417, 508, 567, 819
SfaNI	GCATC	3 cut(s)	168, 857, 900
SfcI	CTRYAG	1 cut(s)	1012
Sfr274I	CTCGAG	1 cut(s)	913
SinI	GGWCC	3 cut(s)	263, 809, 827
SlaI	CTCGAG	1 cut(s)	913
SmiMI	CAYNNNNRTG	1 cut(s)	875
SmlI	CTYRAG	4 cut(s)	40, 122, 365, 913
SmoI	CTYRAG	4 cut(s)	40, 122, 365, 913
SphI	GCATGC	1 cut(s)	905
Sse9I	AATT	4 cut(s)	160, 287, 731, 786
SsiI	CCGC	3 cut(s)	258, 780, 889
SspMI	CTAG	2 cut(s)	251, 275
StyD4I	CCNGG	3 cut(s)	640, 829, 956
TaaI	ACNGT	6 cut(s)	329, 386, 426, 498, 874, 943
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	4 cut(s)	428, 582, 914, 963
TaqII	GACCGA	2 cut(s)	257, 586
TasI	AATT	4 cut(s)	160, 287, 731, 786
Tru1I	TTAA	4 cut(s)	123, 324, 354, 734
Tru9I	TTAA	4 cut(s)	123, 324, 354, 734
TscAI	CASTG	3 cut(s)	334, 466, 745
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	3 cut(s)	608, 611, 834
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	5 cut(s)	17, 95, 156, 435, 983
TspRI	CASTG	3 cut(s)	334, 466, 745
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	3 cut(s)	263, 809, 827
XagI	CCTNNNNNAGG	1 cut(s)	983
XceI	RCATGY	1 cut(s)	905
XhoI	CTCGAG	1 cut(s)	913
XspI	CTAG	2 cut(s)	251, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.