Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006055

Physical Location & Seq

Genomic Coordinates Forward (+)

46062404 .. 46063660

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0342400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCCTCCATTGATGCGGTAACAGCGAGCTTTGCAGCCTCGCTTGCTCTTGCTGAAGGGGGTCGTGCCCCAAATCTAGGGAAGATTGGTGGAGGTCCTTGTGGTTTGGTCACACATGCCGGAATTGCCTGTGAGGAGCCAACTGTAGTCAACCCTACTCCTAGGGTTCTTCACTTTCCAGGAGCTTCGACCTCAGGGAGTTCTTTTGCTTTTTCTGCTAAGAGCAAAAGAGGCCTTCTCTCTTCTTCCCCGGTCATCCCAAAGAAGAAGCGGCCAGCTTTTCGCCGAGTGGAGCGTTCGAACTCGGATCCTCCTTCTCCCACTGATCCGGTTCCAACTGCAACCAGTCCTACGGCTGCGAGTAGTCACTTGGAGCACAGGTTGGAGAGTACCGGGGCCTCAGGTGAAGAACCTGCTATGGATGTTTCTTGTGATCTTGTTGTCCATATAGGTATGCAGAAGAAGCATATTGATCTGGTTTCCAAGAAACGGGAGCGGAGCGGTGATAACCATCCTTCTCCCAAGAAATTCAAAACAATCTTGGGTGGCAAGATTCTTACACTGCAAGCGGAGGCACTTGGCCTCATTGAAGAGGATAGTGACCTTACTTTGGTCACCCTAAAAAAGAAGTCTGGTAGGCCTCTTGGAAGCAAGAATAAAGCTCAGAGTGTCAATAAGAAGCTTGGTGGTACTCCTCTGAAGATCACTTTTCCTACTAGCATTGGAACAGTTCCCAGCCCTAGTGACAAGGGCAAAGGAAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004475 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005996 GO:0006073 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008905 GO:0009058 GO:0009059 GO:0009108 GO:0009110 GO:0009250 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016051 GO:0016053 GO:0016740 GO:0016772 GO:0016779 GO:0019752 GO:0019852 GO:0019853 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042364 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0046394 GO:0046677 GO:0050896 GO:0051186 GO:0051188 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060359 GO:0070568 GO:0071704 GO:0098542 GO:1901576 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110

Pfam Domains

Protein Families

Hexapep NTP_transferase

Protein Analysis

255

Amino Acids

26.48

Weight (kDa)

9.85

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39770 AT2G39770 AT2G39770 AT3G55590
fragaria_vesca	FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380
malus_domestica	MD01G1139900.v1.1 MD07G1204200.v1.1
prunus_persica	Prupe.2G240500_v2.0.a1
pyrus_communis	pycom01g16040 pycom07g19080
rosa_chinensis	RchiOBHm_Chr1g0368511
rosa_laevigata	RLG00000027207
rosa_multiflora	Rmu_co8389653.1_g000001 Rmu_sc0006908.1_g000002 Rmu_sc0011394.1_g000010
rosa_roxburghii	Rroxscaffold_4G00288480
rosa_rugosa	Rorug01G0342400 Rorug01G0342500 Rorug01G0342500
rosa_samantha	Rh1AG349800 Rh1BG312900 Rh1CG327700 Rh1DG344400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	421
AccBSI	CCGCTC	2 cut(s)	496, 501
AciI	CCGC	5 cut(s)	17, 271, 496, 501, 569
AclWI	GGATC	3 cut(s)	302, 315, 320
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	2 cut(s)	75, 719
AfaI	GTAC	2 cut(s)	391, 691
AfiI	CCNNNNNNNGG	3 cut(s)	77, 489, 610
AgsI	TTSAA	2 cut(s)	532, 590
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	6 cut(s)	30, 185, 278, 662, 682, 763
AluI	AGCT	6 cut(s)	30, 185, 278, 662, 682, 763
Alw21I	GWGCWC	1 cut(s)	378
AlwI	GGATC	3 cut(s)	302, 315, 320
AoxI	GGCC	6 cut(s)	3, 232, 272, 396, 580, 638
ApeKI	GCWGC	2 cut(s)	35, 356
ApoI	RAATTY	1 cut(s)	527
AspA2I	CCTAGG	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	95, 396
AsuC2I	CCSGG	2 cut(s)	251, 394
AsuHPI	GGTGA	3 cut(s)	416, 515, 607
AsuII	TTCGAA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	95
AvrII	CCTAGG	1 cut(s)	161
AxyI	CCTNAGG	2 cut(s)	193, 400
BaeGI	GKGCMC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	47, 343
BccI	CCATC	1 cut(s)	519
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	2 cut(s)	251, 394
BfaI	CTAG	4 cut(s)	77, 162, 717, 741
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	3 cut(s)	36, 272, 357
BlnI	CCTAGG	1 cut(s)	161
BlsI	GCNGC	3 cut(s)	37, 273, 358
Bme1390I	CCNGG	3 cut(s)	180, 251, 394
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	95, 396
BmiI	GGNNCC	4 cut(s)	138, 309, 333, 397
BmrFI	CCNGG	3 cut(s)	180, 251, 394
BmsI	GCATC	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
Bpu14I	TTCGAA	1 cut(s)	299
BpuMI	CCSGG	2 cut(s)	251, 394
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	161, 249, 393
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 489, 610
Bse1I	ACTGG	1 cut(s)	345
Bse21I	CCTNAGG	2 cut(s)	193, 400
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	3 cut(s)	161, 249, 393
BseGI	GGATG	3 cut(s)	255, 427, 511
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	77, 489, 610
BseMII	CTCAG	3 cut(s)	207, 414, 677
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	2 cut(s)	149, 684
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	47, 343
BseYI	CCCAGC	1 cut(s)	734
BshFI	GGCC	6 cut(s)	5, 234, 274, 398, 582, 640
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	4 cut(s)	120, 251, 329, 393
BslI	CCNNNNNNNGG	3 cut(s)	77, 489, 610
BsnI	GGCC	6 cut(s)	5, 234, 274, 398, 582, 640
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	70, 378
Bsp143I	GATC	5 cut(s)	307, 325, 433, 472, 702
BspACI	CCGC	5 cut(s)	17, 271, 496, 501, 569
BspANI	GGCC	6 cut(s)	5, 234, 274, 398, 582, 640
BspCNI	CTCAG	3 cut(s)	206, 413, 676
BspLI	GGNNCC	4 cut(s)	138, 309, 333, 397
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	3 cut(s)	302, 315, 320
BspT104I	TTCGAA	1 cut(s)	299
BsrBI	CCGCTC	2 cut(s)	496, 501
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	161, 249, 393
BssMI	GATC	5 cut(s)	307, 325, 433, 472, 702
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	145, 730
Bst6I	CTCTTC	2 cut(s)	247, 585
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	4 cut(s)	28, 45, 276, 567
BstDEI	CTNAG	4 cut(s)	193, 219, 400, 663
BstEII	GGTNACC	1 cut(s)	613
BstF5I	GGATG	3 cut(s)	255, 427, 511
BstKTI	GATC	5 cut(s)	310, 328, 436, 475, 705
BstMBI	GATC	5 cut(s)	307, 325, 433, 472, 702
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 32, 44, 125, 215, 231, 463
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	613
BstSCI	CCNGG	3 cut(s)	178, 249, 392
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	47, 343
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu36I	CCTNAGG	2 cut(s)	193, 400
BsuRI	GGCC	6 cut(s)	5, 234, 274, 398, 582, 640
BtsCI	GGATG	3 cut(s)	255, 427, 511
BtsI	GCAGTG	1 cut(s)	560
BtsIMutI	CAGTG	2 cut(s)	321, 560
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	4 cut(s)	28, 45, 276, 567
Cfr13I	GGNCC	2 cut(s)	95, 396
Csp6I	GTAC	2 cut(s)	390, 690
CviAII	CATG	1 cut(s)	116
CviQI	GTAC	2 cut(s)	390, 690
DdeI	CTNAG	4 cut(s)	193, 219, 400, 663
DpnI	GATC	5 cut(s)	309, 327, 435, 474, 704
DpnII	GATC	5 cut(s)	307, 325, 433, 472, 702
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	247, 585
EarI	CTCTTC	2 cut(s)	247, 585
Eco130I	CCWWGG	1 cut(s)	161
Eco147I	AGGCCT	2 cut(s)	234, 640
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	2 cut(s)	75, 719
Eco81I	CCTNAGG	2 cut(s)	193, 400
Eco91I	GGTNACC	1 cut(s)	613
EcoO109I	RGGNCCY	2 cut(s)	95, 396
EcoO65I	GGTNACC	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	119
FaiI	YATR	6 cut(s)	117, 419, 447, 449, 455, 468
FalI	AAGNNNNNCTT	1 cut(s)	747
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	36, 272, 357
FokI	GGATG	3 cut(s)	242, 434, 498
Fsp4HI	GCNGC	3 cut(s)	36, 272, 357
FspBI	CTAG	4 cut(s)	77, 162, 717, 741
GluI	GCNGC	3 cut(s)	36, 272, 357
GsaI	CCCAGC	1 cut(s)	738
HaeIII	GGCC	6 cut(s)	5, 234, 274, 398, 582, 640
HapII	CCGG	4 cut(s)	120, 251, 329, 393
Hin1II	CATG	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	2 cut(s)	680, 761
HinfI	GANTC	1 cut(s)	553
HpaII	CCGG	4 cut(s)	120, 251, 329, 393
HphI	GGTGA	3 cut(s)	416, 515, 607
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	307, 666, 699
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	4 cut(s)	50, 245, 324, 525
HpyCH4III	ACNGT	2 cut(s)	145, 730
HpyCH4V	TGCA	4 cut(s)	35, 341, 457, 565
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 32, 44, 125, 215, 231, 463
HpyF3I	CTNAG	4 cut(s)	193, 219, 400, 663
Hsp92II	CATG	1 cut(s)	119
Kzo9I	GATC	5 cut(s)	307, 325, 433, 472, 702
LmnI	GCTCC	6 cut(s)	136, 182, 292, 373, 493, 498
Lsp1109I	GCAGC	2 cut(s)	47, 343
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	4 cut(s)	77, 162, 717, 741
MaeIII	GTNAC	6 cut(s)	19, 109, 365, 599, 613, 743
MalI	GATC	5 cut(s)	309, 327, 435, 474, 704
MbiI	CCGCTC	2 cut(s)	496, 501
MboI	GATC	5 cut(s)	307, 325, 433, 472, 702
MboII	GAAGA	9 cut(s)	94, 161, 234, 237, 277, 419, 472, 602, 712
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	70, 378
MluCI	AATT	2 cut(s)	123, 527
MmeI	TCCRAC	2 cut(s)	359, 363
MspI	CCGG	4 cut(s)	120, 251, 329, 393
MspR9I	CCNGG	3 cut(s)	180, 251, 394
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	7 cut(s)	23, 32, 44, 125, 215, 231, 463
NciI	CCSGG	2 cut(s)	251, 394
NdeII	GATC	5 cut(s)	307, 325, 433, 472, 702
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	4 cut(s)	138, 309, 333, 397
NmeAIII	GCCGAG	1 cut(s)	311
NmuCI	GTSAC	5 cut(s)	109, 365, 599, 613, 743
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	299
PceI	AGGCCT	2 cut(s)	234, 640
PfeI	GAWTC	1 cut(s)	553
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	37, 273, 358
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	178
PspEI	GGTNACC	1 cut(s)	613
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	4 cut(s)	138, 309, 333, 397
PspPI	GGNCC	2 cut(s)	95, 396
PspPPI	RGGWCCY	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	391, 691
RsaNI	GTAC	2 cut(s)	390, 690
SatI	GCNGC	3 cut(s)	36, 272, 357
Sau3AI	GATC	5 cut(s)	307, 325, 433, 472, 702
Sau96I	GGNCC	2 cut(s)	95, 396
ScrFI	CCNGG	3 cut(s)	180, 251, 394
SduI	GDGCHC	2 cut(s)	70, 378
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	2 cut(s)	123, 527
SseBI	AGGCCT	2 cut(s)	234, 640
SsiI	CCGC	5 cut(s)	17, 271, 496, 501, 569
SspMI	CTAG	4 cut(s)	77, 162, 717, 741
StuI	AGGCCT	2 cut(s)	234, 640
StyD4I	CCNGG	3 cut(s)	178, 249, 392
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	145, 730
TaqI	TCGA	2 cut(s)	188, 299
TasI	AATT	2 cut(s)	123, 527
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	553
TscAI	CASTG	2 cut(s)	328, 567
TseFI	GTSAC	5 cut(s)	109, 365, 599, 613, 743
TseI	GCWGC	2 cut(s)	35, 356
Tsp45I	GTSAC	5 cut(s)	109, 365, 599, 613, 743
TspRI	CASTG	2 cut(s)	328, 567
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	119
XmaJI	CCTAGG	1 cut(s)	161
XspI	CTAG	4 cut(s)	77, 162, 717, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.