Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006055

Physical Location & Seq

Genomic Coordinates Forward (+)

20617049 .. 20618881

Gene Structure 1833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAAAGCTCTTATTCTTGTTGGAGGTTTTGGCACTCGCTTGAGACCATTGACTCTCAGTCTCCCAAAGCCGCTTGTCGATTTCGCTAATAAACCTATGATTCTACATCAGATAGAGGCACTAAAGGCAATTGGAGTGGATGAAGTCGTCTTGGCCATTAACTACGAGCCAGAGCAACTGCTAGTGATGTCCAAATTCTCAAACGACGTTGAGGCAACTCTCGGGATCAAGATCACCTGCTCACAAGAGACTGAGCCTTTAGGTACAGCTGGTCCTTTGGCTTTAGCCAGGGACAAACTGGTTGATGGCTCTGGCCAACCATTCTTTGTCCTTAACAGCGATGTTATTAGCGACTACCCGCTTGAAGAGATGATTGCTTTTCACAATGCTCATGGAGGAGAGGCCTCTATAATGGTGACAAAGGTAGATGAGCCTTCGAAATATGGAGTTGTTGTTATGGAAGAAGCCACAGGGAGAGTGGAAAGATTCGTCGAAAAACCGAAACTATTTGTTGGTAACAAGATCAATGCTGGGATTTATCTTCTAAATCCTTCAGTTCTTGATCGGATTGAGCTAAGACCAACATCAATAGAGAAAGAGATCTTCCCTCAAATCGCAGAAGCGGAAAAGCTCTATGCAATGCTACTTCCCGGATTCTGGATGGACATTGGTCAACCACGAGACTACATTACTGGTCTAAGACTTTACTTAGACTCTCTGAGGAAGAAATCTCCTTCAAAGTTAGCCACTGGTCCACACATTTTGGGAAATGTTCTTGTGGATGAAACCGCAGAGATTGGTGAAGGATGTTTGATTGGCCCTAACGTTGCTATAGGCCCTGGCTGTGTTGTTGAGTCCGGGGTTAGACTATCGCACTGCACGGTAATGCGTGGGGTACACGTGAAGAGATATGCGTGTATCTCGAGTAGTATCATTGGGTGGCACTCGACGGTCGGACAATGGGCTCGGGTCGAGAACATGTCCATACTTGGGAAAAATGTTTACGTGTGCGATGAGATATATTGTAATGGAGGGGTTGTGTTGCATAACAAAGAGATCAAATCAGACATCTTGAAACCAGATATAGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004475 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005996 GO:0006073 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008905 GO:0009058 GO:0009059 GO:0009108 GO:0009110 GO:0009250 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016051 GO:0016053 GO:0016740 GO:0016772 GO:0016779 GO:0019752 GO:0019852 GO:0019853 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042364 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0046394 GO:0046677 GO:0050896 GO:0051186 GO:0051188 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060359 GO:0070568 GO:0071704 GO:0098542 GO:1901576 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110

Pfam Domains

Protein Families

Hexapep NTP_transferase

Protein Analysis

364

Amino Acids

39.81

Weight (kDa)

5.7

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	2 - 236	2e-57	Nucleotidyl transferase
NTP_transf_3	PF12804	3 - 138	3.7e-09	MobA-like NTP transferase domain
LbH_EIF2B	PF25084	245 - 339	5.1e-12	EIF2B subunit epsilon LbH domain
GMPPB_C	PF25087	254 - 363	3.8e-40	GMPPB C-terminal domain
Hexapep	PF00132	264 - 298	3.4e-07	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39770 AT2G39770 AT2G39770 AT3G55590
fragaria_vesca	FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380
malus_domestica	MD01G1139900.v1.1 MD07G1204200.v1.1
prunus_persica	Prupe.2G240500_v2.0.a1
pyrus_communis	pycom01g16040 pycom07g19080
rosa_chinensis	RchiOBHm_Chr1g0368511
rosa_laevigata	RLG00000027207
rosa_multiflora	Rmu_co8389653.1_g000001 Rmu_sc0006908.1_g000002 Rmu_sc0011394.1_g000010
rosa_roxburghii	Rroxscaffold_4G00288480
rosa_rugosa	Rorug01G0342400 Rorug01G0342500 Rorug01G0342500
rosa_samantha	Rh1AG349800 Rh1BG312900 Rh1CG327700 Rh1DG344400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	245
AciI	CCGC	4 cut(s)	71, 359, 623, 789
AclI	AACGTT	1 cut(s)	825
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	2 cut(s)	153, 313
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	537
AcvI	CACGTG	1 cut(s)	901
AfaI	GTAC	2 cut(s)	265, 897
AfiI	CCNNNNNNNGG	2 cut(s)	657, 990
AflIII	ACRYGT	3 cut(s)	898, 978, 1005
AgsI	TTSAA	3 cut(s)	365, 738, 1075
AhdI	GACNNNNNGTC	1 cut(s)	57
AjnI	CCWGG	2 cut(s)	287, 838
AluBI	AGCT	4 cut(s)	8, 269, 574, 631
AluI	AGCT	4 cut(s)	8, 269, 574, 631
Alw26I	GTCTC	4 cut(s)	37, 65, 242, 675
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	3 cut(s)	221, 922, 966
AoxI	GGCC	5 cut(s)	153, 313, 402, 817, 835
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	272, 752, 818, 836
AsuC2I	CCSGG	2 cut(s)	651, 859
AsuHPI	GGTGA	3 cut(s)	226, 427, 812
AsuII	TTCGAA	1 cut(s)	437
AvaI	CYCGRG	3 cut(s)	221, 922, 966
AvaII	GGWCC	2 cut(s)	272, 752
BalI	TGGCCA	2 cut(s)	155, 315
BanII	GRGCYC	1 cut(s)	967
BauI	CACGAG	1 cut(s)	678
BbrPI	CACGTG	1 cut(s)	901
BccI	CCATC	2 cut(s)	299, 655
BciT130I	CCWGG	2 cut(s)	289, 840
BcnI	CCSGG	2 cut(s)	651, 859
BcoDI	GTCTC	4 cut(s)	37, 65, 242, 675
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	831
BfuAI	ACCTGC	1 cut(s)	245
BglII	AGATCT	1 cut(s)	600
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	4 cut(s)	289, 651, 840, 859
Bme18I	GGWCC	2 cut(s)	272, 752
BmeRI	GACNNNNNGTC	1 cut(s)	57
BmeT110I	CYCGRG	3 cut(s)	221, 922, 966
BmgT120I	GGNCC	4 cut(s)	272, 752, 818, 836
BmrFI	CCNGG	4 cut(s)	289, 651, 840, 859
BoxI	GACNNNNGTC	1 cut(s)	669
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	2 cut(s)	651, 859
BsaAI	YACGTR	2 cut(s)	901, 1006
BsaBI	GATNNNNATC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	288, 838, 858
BsaXI	ACNNNNNCTCC	4 cut(s)	438, 468, 1023, 1053
Bsc4I	CCNNNNNNNGG	2 cut(s)	657, 990
Bse1I	ACTGG	3 cut(s)	303, 697, 754
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	289, 840
BseDI	CCNNGG	3 cut(s)	288, 838, 858
BseGI	GGATG	4 cut(s)	145, 666, 787, 812
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	657, 990
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	3 cut(s)	70, 243, 710
BseNI	ACTGG	3 cut(s)	303, 697, 754
BseRI	GAGGAG	1 cut(s)	411
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	862
Bsh1285I	CGRYCG	1 cut(s)	954
BshFI	GGCC	5 cut(s)	155, 315, 404, 819, 837
BsiEI	CGRYCG	1 cut(s)	954
BsiHKCI	CYCGRG	3 cut(s)	221, 922, 966
BsiSI	CCGG	2 cut(s)	651, 858
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	657, 990
BsmAI	GTCTC	4 cut(s)	37, 65, 242, 675
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	5 cut(s)	155, 315, 404, 819, 837
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	3 cut(s)	221, 922, 966
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp143I	GATC	6 cut(s)	225, 231, 522, 562, 600, 1056
BspACI	CCGC	4 cut(s)	71, 359, 623, 789
BspANI	GGCC	5 cut(s)	155, 315, 404, 819, 837
BspCNI	CTCAG	3 cut(s)	69, 244, 711
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	233
BspT104I	TTCGAA	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	303, 697, 754
BssECI	CCNNGG	3 cut(s)	288, 838, 858
BssMI	GATC	6 cut(s)	225, 231, 522, 562, 600, 1056
BssSI	CACGAG	1 cut(s)	678
Bst2BI	CACGAG	1 cut(s)	678
Bst2UI	CCWGG	2 cut(s)	289, 840
Bst4CI	ACNGT	2 cut(s)	883, 952
Bst6I	CTCTTC	2 cut(s)	360, 899
BstBAI	YACGTR	2 cut(s)	901, 1006
BstBI	TTCGAA	1 cut(s)	437
BstDEI	CTNAG	6 cut(s)	56, 252, 575, 698, 709, 719
BstF5I	GGATG	4 cut(s)	145, 666, 787, 812
BstKTI	GATC	6 cut(s)	228, 234, 525, 565, 603, 1059
BstMAI	GTCTC	4 cut(s)	37, 65, 242, 675
BstMBI	GATC	6 cut(s)	225, 231, 522, 562, 600, 1056
BstMCI	CGRYCG	1 cut(s)	954
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	289, 840
BstNSI	RCATGY	1 cut(s)	982
BstPAI	GACNNNNGTC	1 cut(s)	669
BstSCI	CCNGG	4 cut(s)	287, 649, 838, 857
BstSFI	CTRYAG	1 cut(s)	831
BstX2I	RGATCY	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	600
BsuRI	GGCC	5 cut(s)	155, 315, 404, 819, 837
BtgZI	GCGATG	2 cut(s)	354, 1026
BtsCI	GGATG	4 cut(s)	145, 666, 787, 812
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	2 cut(s)	747, 874
BveI	ACCTGC	1 cut(s)	245
Cfr13I	GGNCC	4 cut(s)	272, 752, 818, 836
Csp6I	GTAC	2 cut(s)	264, 896
CspCI	CAANNNNNGTGG	4 cut(s)	117, 152, 744, 779
CviAII	CATG	2 cut(s)	392, 979
CviQI	GTAC	2 cut(s)	264, 896
DdeI	CTNAG	6 cut(s)	56, 252, 575, 698, 709, 719
DpnI	GATC	6 cut(s)	227, 233, 524, 564, 602, 1058
DpnII	GATC	6 cut(s)	225, 231, 522, 562, 600, 1056
DriI	GACNNNNNGTC	1 cut(s)	57
EaeI	YGGCCR	2 cut(s)	153, 313
Eam1104I	CTCTTC	2 cut(s)	360, 899
Eam1105I	GACNNNNNGTC	1 cut(s)	57
EarI	CTCTTC	2 cut(s)	360, 899
Eco147I	AGGCCT	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	967
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	272, 752
Eco57I	CTGAAG	1 cut(s)	537
Eco72I	CACGTG	1 cut(s)	901
Eco88I	CYCGRG	3 cut(s)	221, 922, 966
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRII	CCWGG	2 cut(s)	287, 838
EcoT38I	GRGCYC	1 cut(s)	967
FaeI	CATG	2 cut(s)	395, 982
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	391, 978
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	4 cut(s)	152, 673, 794, 819
FriOI	GRGCYC	1 cut(s)	967
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	71
GsaI	CCCAGC	1 cut(s)	534
HaeIII	GGCC	5 cut(s)	155, 315, 404, 819, 837
HapII	CCGG	2 cut(s)	651, 858
Hin1II	CATG	2 cut(s)	395, 982
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HinfI	GANTC	6 cut(s)	52, 100, 486, 654, 713, 854
HpaII	CCGG	2 cut(s)	651, 858
HphI	GGTGA	3 cut(s)	226, 427, 812
Hpy166II	GTNNAC	4 cut(s)	674, 755, 898, 1003
Hpy188I	TCNGA	5 cut(s)	111, 567, 720, 956, 1066
Hpy188III	TCNNGA	7 cut(s)	223, 229, 560, 658, 922, 973, 1072
Hpy8I	GTNNAC	4 cut(s)	674, 755, 898, 1003
Hpy99I	CGWCG	3 cut(s)	209, 494, 952
HpyAV	CCTTC	4 cut(s)	444, 561, 744, 797
HpyCH4III	ACNGT	2 cut(s)	883, 952
HpyCH4IV	ACGT	4 cut(s)	207, 825, 900, 1005
HpyCH4V	TGCA	3 cut(s)	638, 879, 1045
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	6 cut(s)	56, 252, 575, 698, 709, 719
HpySE526I	ACGT	4 cut(s)	207, 825, 900, 1005
Hsp92II	CATG	2 cut(s)	395, 982
Kzo9I	GATC	6 cut(s)	225, 231, 522, 562, 600, 1056
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	4 cut(s)	207, 825, 900, 1005
MaeIII	GTNAC	2 cut(s)	415, 515
MalI	GATC	6 cut(s)	227, 233, 524, 564, 602, 1058
MboI	GATC	6 cut(s)	225, 231, 522, 562, 600, 1056
MboII	GAAGA	6 cut(s)	377, 473, 533, 595, 736, 916
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	600
MhlI	GDGCHC	1 cut(s)	967
MlsI	TGGCCA	2 cut(s)	155, 315
MluCI	AATT	2 cut(s)	129, 194
MluNI	TGGCCA	2 cut(s)	155, 315
MlyI	GAGTC	3 cut(s)	46, 707, 863
MmeI	TCCRAC	1 cut(s)	934
MnlI	CCTC	9 cut(s)	17, 109, 205, 389, 394, 415, 618, 714, 1025
Mox20I	TGGCCA	2 cut(s)	155, 315
MscI	TGGCCA	2 cut(s)	155, 315
MseI	TTAA	2 cut(s)	159, 333
MslI	CAYNNNNRTG	1 cut(s)	884
Msp20I	TGGCCA	2 cut(s)	155, 315
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	651, 858
MspR9I	CCNGG	4 cut(s)	289, 651, 840, 859
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	289, 840
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	2 cut(s)	651, 859
NdeII	GATC	6 cut(s)	225, 231, 522, 562, 600, 1056
NlaIII	CATG	2 cut(s)	395, 982
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	982
NspV	TTCGAA	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	922
PaqCI	CACCTGC	1 cut(s)	245
PceI	AGGCCT	1 cut(s)	404
PciI	ACATGT	1 cut(s)	978
PfeI	GAWTC	3 cut(s)	100, 486, 654
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	3 cut(s)	46, 707, 862
PmaCI	CACGTG	1 cut(s)	901
PmlI	CACGTG	1 cut(s)	901
PpsI	GAGTC	3 cut(s)	46, 707, 862
Ppu21I	YACGTR	2 cut(s)	901, 1006
PscI	ACATGT	1 cut(s)	978
PshAI	GACNNNNGTC	1 cut(s)	669
Psp1406I	AACGTT	1 cut(s)	825
Psp6I	CCWGG	2 cut(s)	287, 838
PspCI	CACGTG	1 cut(s)	901
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	287, 838
PspPI	GGNCC	4 cut(s)	272, 752, 818, 836
PsuI	RGATCY	1 cut(s)	600
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	265, 897
RsaNI	GTAC	2 cut(s)	264, 896
RseI	CAYNNNNRTG	1 cut(s)	884
SaqAI	TTAA	2 cut(s)	159, 333
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	6 cut(s)	225, 231, 522, 562, 600, 1056
Sau96I	GGNCC	4 cut(s)	272, 752, 818, 836
SchI	GAGTC	3 cut(s)	46, 707, 863
ScrFI	CCNGG	4 cut(s)	289, 651, 840, 859
SduI	GDGCHC	1 cut(s)	967
SfcI	CTRYAG	1 cut(s)	831
Sfr274I	CTCGAG	1 cut(s)	922
SfuI	TTCGAA	1 cut(s)	437
SinI	GGWCC	2 cut(s)	272, 752
SlaI	CTCGAG	1 cut(s)	922
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	2 cut(s)	40, 922
SmoI	CTYRAG	2 cut(s)	40, 922
Sse9I	AATT	2 cut(s)	129, 194
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	4 cut(s)	71, 359, 623, 789
SspMI	CTAG	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	4 cut(s)	287, 649, 838, 857
TaaI	ACNGT	2 cut(s)	883, 952
TaiI	ACGT	4 cut(s)	210, 828, 903, 1008
TaqI	TCGA	6 cut(s)	78, 437, 492, 923, 947, 972
TasI	AATT	2 cut(s)	129, 194
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	100, 486, 654
Tru1I	TTAA	2 cut(s)	159, 333
Tru9I	TTAA	2 cut(s)	159, 333
TscAI	CASTG	2 cut(s)	754, 881
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	17, 156, 798
TspRI	CASTG	2 cut(s)	754, 881
VpaK11BI	GGWCC	2 cut(s)	272, 752
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	982
XcmI	CCANNNNNNNNNTGG	2 cut(s)	295, 475
XhoI	CTCGAG	1 cut(s)	922
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.