pycom01g16040

Mannose-1-phosphate

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
15755994 .. 15757483
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16040.4

Sequence Viewer

Length: 1086 bp
ATGAAGGCACTTATTCTTGTTGGAGGTTTCGGGACGCGTCTGCGGCCATTGACACTCAGTTTCCCCAAGCCACTTGTTGAGTTTGCTAACAAACCCATGATACTGCATCAGATAGAGGCTCTTAAGGCAATTGGTGTGACCGAAGTGGTTCTGGCTATCAATTACCAACCAGAGGTGATGATGACTTTCTTGAAGGAGTTTGAGGAAAAGGTTGGCATCAAGATCACATGCTCACAAGAGACCGAACCCCTTGGCACTGCTGGGCCTCTGGCTCTTGCTAGGGACAAACTGATTGATGATTCTGGCGAGCCCTTCTTTGTCCTTAACAGTGATGTTATCAGCGAGTACCCGTTTAAGCTAATGATTGAATTCCATAAAGGCCATGGAGGAGAAGCTTCCATAATGGTGACCAAGGTGGATGAGCCATCGAAATATGGTGTGGTGGTTATGGAAGAGTCTACAGGGAAAGTTCAGAAATTTGTAGAGAAACCAAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATTTACCTGTTGAACCCCTCCGTTCTTGATAAAATTGAACTCAGACCAACCTCAATTGAGAAAGAAGTATTCCCGAAAATCGCAGCAGAGAATAAGCTCTTTGCAATGGTCCTTCCAGGGTTTTGGATGGACATTGGGCAACCAAGGGATTATATTACCGGCCTGAGGCTATACTTGGATTCGTTGAGGAAGAACTCTTCATCCAAGTTGGCCGTAGGCGCTCACATTGTGGGAAACGTTCTGGTGGATGAGACTGCCAAAATTGGCGTGGGGTGCCTGATTGGACCGGATGTTGCAATCGGTCCAGGCTGCGTTATCGAGTCAGGAGTCAGACTCTCTCGCTGCACGGTAATGCGTGGAGTCCGCATCAAGAACCACGCTTGCATTTCCAGCAGTATCATCGGATGGCACTCCACCGTTGGACAATGGGCTCGCGTAGAGAACATGACCATCCTTGGAGAAGATGTGCACGTGAGCGATGAGATTTACAGCAACGGAGGTGTGGTATTGCCACACAAAGAAATCAAGTCGAGCATTTTGAAGCCGGAAATTGTAATGTAG

Protein Analysis

362

Amino Acids

39.54

Weight (kDa)

6.73

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 798
AccI GTMKAC 1 cut(s) 458
AccII CGCG 2 cut(s) 37, 960
AciI CCGC 2 cut(s) 43, 889
AclI AACGTT 1 cut(s) 762
AcoI YGGCCR 2 cut(s) 44, 735
AcsI RAATTY 3 cut(s) 368, 476, 525
AcvI CACGTG 1 cut(s) 997
AdeI CACNNNGTG 1 cut(s) 754
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 172, 690
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 35
AgsI TTSAA 5 cut(s) 193, 368, 538, 563, 1066
AjnI CCWGG 2 cut(s) 640, 829
AloI GAACNNNNNNTCC 2 cut(s) 710, 742
AluBI AGCT 3 cut(s) 358, 395, 622
AluI AGCT 3 cut(s) 358, 395, 622
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 2 cut(s) 233, 770
Alw44I GTGCAC 1 cut(s) 992
AoxI GGCC 5 cut(s) 44, 263, 379, 685, 735
ApaLI GTGCAC 1 cut(s) 992
ApeKI GCWGC 3 cut(s) 608, 834, 867
ApoI RAATTY 3 cut(s) 368, 476, 525
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 746
AspS9I GGNCC 4 cut(s) 263, 634, 809, 827
AsuHPI GGTGA 2 cut(s) 187, 418
AvaII GGWCC 3 cut(s) 634, 809, 827
AxyI CCTNAGG 1 cut(s) 689
BaeGI GKGCMC 1 cut(s) 996
BanI GGYRCC 1 cut(s) 798
BanII GRGCYC 2 cut(s) 312, 958
BbrPI CACGTG 1 cut(s) 997
Bbv12I GWGCWC 1 cut(s) 996
BbvI GCAGC 3 cut(s) 620, 821, 854
BccI CCATC 4 cut(s) 433, 646, 924, 983
BceAI ACGGC 1 cut(s) 722
BcgI CGANNNNNNTGC 2 cut(s) 907, 941
BciT130I CCWGG 2 cut(s) 642, 831
BcoDI GTCTC 2 cut(s) 233, 770
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 747
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 4 cut(s) 44, 609, 835, 868
BlsI GCNGC 4 cut(s) 45, 610, 836, 869
Bme1390I CCNGG 2 cut(s) 642, 831
Bme18I GGWCC 3 cut(s) 634, 809, 827
BmgT120I GGNCC 4 cut(s) 263, 634, 809, 827
BmiI GGNNCC 1 cut(s) 800
BmrFI CCNGG 2 cut(s) 642, 831
BmsI GCATC 3 cut(s) 115, 225, 900
BplI GAGNNNNNCTC 2 cut(s) 843, 875
BsaAI YACGTR 1 cut(s) 997
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 6 cut(s) 250, 382, 411, 641, 668, 979
BsaWI WCCGGW 1 cut(s) 811
BsaXI ACNNNNNCTCC 4 cut(s) 975, 1005, 1014, 1044
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 690
Bse118I RCCGGY 1 cut(s) 683
Bse21I CCTNAGG 1 cut(s) 689
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 2 cut(s) 642, 831
BseDI CCNNGG 6 cut(s) 250, 382, 411, 641, 668, 979
BseGI GGATG 7 cut(s) 424, 657, 725, 778, 820, 935, 975
BseLI CCNNNNNNNGG 2 cut(s) 172, 690
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 70, 580, 680
BseRI GAGGAG 1 cut(s) 402
BseSI GKGCMC 1 cut(s) 996
BseXI GCAGC 3 cut(s) 620, 821, 854
BseYI CCCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 853
Bsh1236I CGCG 2 cut(s) 37, 960
BshFI GGCC 5 cut(s) 46, 265, 381, 687, 737
BshNI GGYRCC 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 996
BsiSI CCGG 3 cut(s) 684, 812, 1070
BslFI GGGAC 2 cut(s) 46, 296
BslI CCNNNNNNNGG 2 cut(s) 172, 690
BsmAI GTCTC 2 cut(s) 233, 770
BsmFI GGGAC 2 cut(s) 46, 296
BsnI GGCC 5 cut(s) 46, 265, 381, 687, 737
Bso31I GGTCTC 1 cut(s) 233
Bsp1286I GDGCHC 3 cut(s) 312, 958, 996
Bsp143I GATC 1 cut(s) 222
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 2 cut(s) 43, 889
BspANI GGCC 5 cut(s) 46, 265, 381, 687, 737
BspCNI CTCAG 3 cut(s) 69, 579, 681
BspFNI CGCG 2 cut(s) 37, 960
BspLI GGNNCC 1 cut(s) 800
BspT107I GGYRCC 1 cut(s) 798
BspTI CTTAAG 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 1 cut(s) 683
BssAI RCCGGY 1 cut(s) 683
BssECI CCNNGG 6 cut(s) 250, 382, 411, 641, 668, 979
BssMI GATC 1 cut(s) 222
BssT1I CCWWGG 5 cut(s) 250, 382, 411, 668, 979
Bst2UI CCWGG 2 cut(s) 642, 831
Bst4CI ACNGT 3 cut(s) 329, 874, 943
Bst6I CTCTTC 2 cut(s) 447, 727
BstAFI CTTAAG 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 997
BstC8I GCNNGC 3 cut(s) 308, 907, 958
BstDEI CTNAG 3 cut(s) 56, 566, 689
BstDSI CCRYGG 1 cut(s) 382
BstEII GGTNACC 1 cut(s) 406
BstF5I GGATG 7 cut(s) 424, 657, 725, 778, 820, 935, 975
BstFNI CGCG 2 cut(s) 37, 960
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 1 cut(s) 746
BstKTI GATC 1 cut(s) 225
BstMAI GTCTC 2 cut(s) 233, 770
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 5 cut(s) 43, 125, 743, 798, 915
BstNI CCWGG 2 cut(s) 642, 831
BstNSI RCATGY 1 cut(s) 231
BstPI GGTNACC 1 cut(s) 406
BstSCI CCNGG 2 cut(s) 640, 829
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 996
BstUI CGCG 2 cut(s) 37, 960
BstV1I GCAGC 3 cut(s) 620, 821, 854
BstXI CCANNNNNNTGG 1 cut(s) 648
Bsu36I CCTNAGG 1 cut(s) 689
BsuRI GGCC 5 cut(s) 46, 265, 381, 687, 737
BtgI CCRYGG 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 1017
BtsCI GGATG 7 cut(s) 424, 657, 725, 778, 820, 935, 975
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 334
Cac8I GCNNGC 3 cut(s) 308, 907, 958
CfoI GCGC 1 cut(s) 746
Cfr10I RCCGGY 1 cut(s) 683
Cfr13I GGNCC 4 cut(s) 263, 634, 809, 827
CseI GACGC 2 cut(s) 26, 43
Csp6I GTAC 1 cut(s) 346
CviAII CATG 4 cut(s) 97, 228, 383, 970
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 3 cut(s) 56, 566, 689
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
DraIII CACNNNGTG 1 cut(s) 754
EaeI YGGCCR 2 cut(s) 44, 735
Eam1104I CTCTTC 2 cut(s) 447, 727
EarI CTCTTC 2 cut(s) 447, 727
Eco130I CCWWGG 5 cut(s) 250, 382, 411, 668, 979
Eco24I GRGCYC 2 cut(s) 312, 958
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 3 cut(s) 634, 809, 827
Eco72I CACGTG 1 cut(s) 997
Eco81I CCTNAGG 1 cut(s) 689
Eco91I GGTNACC 1 cut(s) 406
EcoO65I GGTNACC 1 cut(s) 406
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 640, 829
EcoT14I CCWWGG 5 cut(s) 250, 382, 411, 668, 979
EcoT38I GRGCYC 2 cut(s) 312, 958
ErhI CCWWGG 5 cut(s) 250, 382, 411, 668, 979
FaeI CATG 4 cut(s) 100, 231, 386, 973
FaqI GGGAC 2 cut(s) 46, 296
FatI CATG 4 cut(s) 96, 227, 382, 969
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 4 cut(s) 44, 609, 835, 868
FokI GGATG 7 cut(s) 431, 664, 712, 785, 827, 942, 962
FriOI GRGCYC 2 cut(s) 312, 958
Fsp4HI GCNGC 4 cut(s) 44, 609, 835, 868
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 745
GluI GCNGC 4 cut(s) 44, 609, 835, 868
GsaI CCCAGC 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 747
HaeIII GGCC 5 cut(s) 46, 265, 381, 687, 737
HapII CCGG 3 cut(s) 684, 812, 1070
HgaI GACGC 2 cut(s) 26, 43
HhaI GCGC 1 cut(s) 746
Hin1II CATG 4 cut(s) 100, 231, 386, 973
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 7 cut(s) 299, 455, 704, 845, 852, 858, 885
HpaII CCGG 3 cut(s) 684, 812, 1070
HphI GGTGA 2 cut(s) 187, 418
Hpy166II GTNNAC 2 cut(s) 459, 994
Hpy188I TCNGA 5 cut(s) 111, 474, 569, 857, 929
Hpy188III TCNNGA 7 cut(s) 31, 190, 220, 551, 598, 849, 895
Hpy8I GTNNAC 2 cut(s) 459, 994
HpyAV CCTTC 3 cut(s) 187, 322, 647
HpyCH4III ACNGT 3 cut(s) 329, 874, 943
HpyCH4IV ACGT 2 cut(s) 762, 996
HpyCH4V TGCA 6 cut(s) 106, 629, 821, 870, 909, 994
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 125, 743, 798, 915
HpyF3I CTNAG 3 cut(s) 56, 566, 689
HpySE526I ACGT 2 cut(s) 762, 996
Hsp92II CATG 4 cut(s) 100, 231, 386, 973
HspAI GCGC 1 cut(s) 744
Kzo9I GATC 1 cut(s) 222
Lsp1109I GCAGC 3 cut(s) 620, 821, 854
LweI GCATC 3 cut(s) 115, 225, 900
MaeI CTAG 1 cut(s) 279
MaeII ACGT 2 cut(s) 762, 996
MaeIII GTNAC 3 cut(s) 136, 406, 506
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 4 cut(s) 464, 714, 727, 998
MfeI CAATTG 2 cut(s) 129, 579
MhlI GDGCHC 3 cut(s) 312, 958, 996
MluCI AATT 9 cut(s) 129, 160, 368, 476, 525, 558, 579, 786, 1074
MluI ACGCGT 1 cut(s) 35
MlyI GAGTC 5 cut(s) 464, 852, 854, 861, 894
MmeI TCCRAC 1 cut(s) 925
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 3 cut(s) 123, 324, 354
MslI CAYNNNNRTG 2 cut(s) 404, 875
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 3 cut(s) 684, 812, 1070
MspR9I CCNGG 2 cut(s) 642, 831
MunI CAATTG 2 cut(s) 129, 579
MvaI CCWGG 2 cut(s) 642, 831
MvnI CGCG 2 cut(s) 37, 960
MwoI GCNNNNNNNGC 5 cut(s) 43, 125, 743, 798, 915
NcoI CCATGG 1 cut(s) 382
NdeII GATC 1 cut(s) 222
NlaIII CATG 4 cut(s) 100, 231, 386, 973
NlaIV GGNNCC 1 cut(s) 800
NmuCI GTSAC 2 cut(s) 136, 406
NspI RCATGY 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 299, 704
PkrI GCNGC 4 cut(s) 45, 610, 836, 869
PleI GAGTC 5 cut(s) 463, 852, 853, 860, 893
PmaCI CACGTG 1 cut(s) 997
PmlI CACGTG 1 cut(s) 997
PpsI GAGTC 5 cut(s) 463, 852, 853, 860, 893
Ppu21I YACGTR 1 cut(s) 997
Psp1406I AACGTT 1 cut(s) 762
Psp6I CCWGG 2 cut(s) 640, 829
PspCI CACGTG 1 cut(s) 997
PspEI GGTNACC 1 cut(s) 406
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 2 cut(s) 640, 829
PspN4I GGNNCC 1 cut(s) 800
PspPI GGNCC 4 cut(s) 263, 634, 809, 827
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 404, 875
SaqAI TTAA 3 cut(s) 123, 324, 354
SatI GCNGC 4 cut(s) 44, 609, 835, 868
Sau3AI GATC 1 cut(s) 222
Sau96I GGNCC 4 cut(s) 263, 634, 809, 827
SchI GAGTC 5 cut(s) 464, 852, 854, 861, 894
ScrFI CCNGG 2 cut(s) 642, 831
SduI GDGCHC 3 cut(s) 312, 958, 996
SfaNI GCATC 3 cut(s) 115, 225, 900
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 3 cut(s) 634, 809, 827
SmiMI CAYNNNNRTG 2 cut(s) 404, 875
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 9 cut(s) 129, 160, 368, 476, 525, 558, 579, 786, 1074
SsiI CCGC 2 cut(s) 43, 889
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 640, 829
StyI CCWWGG 5 cut(s) 250, 382, 411, 668, 979
TaaI ACNGT 3 cut(s) 329, 874, 943
TaiI ACGT 2 cut(s) 765, 999
TaqI TCGA 3 cut(s) 428, 843, 1055
TaqII GACCGA 3 cut(s) 155, 257, 815
TasI AATT 9 cut(s) 129, 160, 368, 476, 525, 558, 579, 786, 1074
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 2 cut(s) 299, 704
Tru1I TTAA 3 cut(s) 123, 324, 354
Tru9I TTAA 3 cut(s) 123, 324, 354
TscAI CASTG 2 cut(s) 262, 334
TseFI GTSAC 2 cut(s) 136, 406
TseI GCWGC 3 cut(s) 608, 834, 867
Tsp45I GTSAC 2 cut(s) 136, 406
TspDTI ATGAA 2 cut(s) 17, 714
TspGWI ACGGA 2 cut(s) 535, 1035
TspRI CASTG 2 cut(s) 262, 334
Vha464I CTTAAG 1 cut(s) 122
VneI GTGCAC 1 cut(s) 992
VpaK11BI GGWCC 3 cut(s) 634, 809, 827
XapI RAATTY 3 cut(s) 368, 476, 525
XceI RCATGY 1 cut(s) 231
XcmI CCANNNNNNNNNTGG 2 cut(s) 380, 790
XmiI GTMKAC 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.