Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006055

Physical Location & Seq

Genomic Coordinates Forward (+)

46083632 .. 46090224

Gene Structure 6593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0342500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGCGGAGAAGAATCGTAACCTACTGCCACGTGTCACCCTTTACTCGCCAATACTCTAGCTTATCTCCTCCACCGCCGCAGACCGCCGGACCGCCGCCGCTCATCCGAGTGTCGAACCACGTCGCCAAACTGGGCCCACCGAAAGAAGGCCCGAAACCCAGGCAGCTCCTCTCCTTGCCGCCTTTCCCCGGCGGTCGACATTTGCCGGGGAAGAAGAAGTCATACCAAGACGGCGCCGTTTCACGACCCTCACACGTCACCGCCGTCAGTTGGCTCAAGTATTACTTCCATGAGATTGACGACACCGCCATTCGGTCCCATTTCAACAAAGGCCTTGTTCAGATGGAAGGCCCGGATTCAATTGGGAAGGAAGGGCAAGTGAAACGTATGAGAAAGATTAGGCCTAGTGAGGTAATGGAGGAAGGTGCAAGAGTATATGTACCCGTATCGATTGCAGAGAGTAAAATTTCAAGGAGATTCGACTGCATACCGAGTGAGACATTGTACCCAAATGCGGATGAGATTGACTACTTGCAAAGGCTTGTCAAGTACAAGGACTCTGCTATAATAGTGCTGAACAAGCCCTCAAAATTGCCAGTCAAGGGTAATGTGCCAGTCCATAACAGCATGGATGCATTGGCAGCAGCAGCATTATCTTATGATTATGATGAAGGTCCTAAATTGGTTCATCGGCTTGACAGAGAGAGCAGTGGCCTCCTTTTAATGGGAAGAACAAAAGACAGTGTATCTCTTCTGCATTCGTTATACACTGACATCAACATTGGGAAATCATCATGCAGGGCTTGGAATGATGCATGTAGAACAAAATGTCAGAGGTACTGGGCATTGGTTATAGGGTCGCCCAAGGAAAAGGAAGGCTTAATTTGTGCTCCTCTCATGAAGGTGCTTCTTGACGATGGGAAGACAGAGAGGGTCATCTTGGCTCCTCAGTCAGGATTAGAAGCTTCCCAACCGGCTCTAACTCAATATCGGGTGCTTGGTCCTACGATAAATGGATGCTCATGGATTGAATTACAACCACTCACTAGCCGAAAGCATCAGCTCCGTGTTCATTGTGCTGAAGCTTTAGGCACGCCAATTGTGGGTGACTATAAGTATGGGTGGTTTGTTCACCGGAGATGGAAACAAATGCCTCAAGTCGATATTGAGCCGGCAACTGGGCTACAATACAAGTTGCGGAGGCCAGCAGGTCTGGATGTACAGAAGGGAAGTGTTCTATCAAAAGTCCCTCTTTTGCATCTACACTGTAGAGAGCTCGTACTCCCCAATATTGCTAAGTTCCTTGTTTTATTGGATCAGAAGTCAGACAACTGGCACCCTGTAGACAGTTTGAAGCCAGATATCCTTCGGTTTGTGGCATCGATGCCAACCCACATGAAACTTAGTTGGAATCTCATGTCATCTTATTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004475 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005996 GO:0006073 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008905 GO:0009058 GO:0009059 GO:0009108 GO:0009110 GO:0009250 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016051 GO:0016053 GO:0016740 GO:0016772 GO:0016779 GO:0019752 GO:0019852 GO:0019853 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042364 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0046394 GO:0046677 GO:0050896 GO:0051186 GO:0051188 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060359 GO:0070568 GO:0071704 GO:0098542 GO:1901576 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110

Pfam Domains

Protein Families

Hexapep NTP_transferase

Protein Analysis

478

Amino Acids

53.72

Weight (kDa)

9.59

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	189 - 360	6.9e-21	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39770 AT2G39770 AT2G39770 AT3G55590
fragaria_vesca	FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380
malus_domestica	MD01G1139900.v1.1 MD07G1204200.v1.1
prunus_persica	Prupe.2G240500_v2.0.a1
pyrus_communis	pycom01g16040 pycom07g19080
rosa_chinensis	RchiOBHm_Chr1g0368511
rosa_laevigata	RLG00000027207
rosa_multiflora	Rmu_co8389653.1_g000001 Rmu_sc0006908.1_g000002 Rmu_sc0011394.1_g000010
rosa_roxburghii	Rroxscaffold_4G00288480
rosa_rugosa	Rorug01G0342400 Rorug01G0342500 Rorug01G0342500
rosa_samantha	Rh1AG349800 Rh1BG312900 Rh1CG327700 Rh1DG344400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1199
AccB1I	GGYRCC	2 cut(s)	233, 1335
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	2 cut(s)	196, 1344
AclWI	GGATC	1 cut(s)	1323
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	1101
AcvI	CACGTG	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	6 cut(s)	441, 506, 551, 839, 1221, 1281
AflIII	ACRYGT	2 cut(s)	30, 253
AgsI	TTSAA	5 cut(s)	325, 360, 471, 1031, 1354
AjiI	CACGTC	2 cut(s)	121, 256
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	6 cut(s)	60, 166, 965, 1063, 1085, 1276
AluI	AGCT	6 cut(s)	60, 166, 965, 1063, 1085, 1276
Alw21I	GWGCWC	2 cut(s)	892, 1278
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	1 cut(s)	1323
AoxI	GGCC	7 cut(s)	133, 148, 331, 349, 401, 712, 1202
ApaI	GGGCCC	1 cut(s)	137
ApeKI	GCWGC	4 cut(s)	163, 641, 644, 647
ApoI	RAATTY	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	8 cut(s)	89, 133, 134, 149, 315, 350, 674, 1001
AsuC2I	CCSGG	3 cut(s)	189, 207, 353
AsuHPI	GGTGA	4 cut(s)	27, 250, 1118, 1124
AvaII	GGWCC	4 cut(s)	89, 315, 674, 1001
BaeGI	GKGCMC	1 cut(s)	137
BanI	GGYRCC	2 cut(s)	233, 1335
BanII	GRGCYC	2 cut(s)	137, 1278
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbrPI	CACGTG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	929
Bbv12I	GWGCWC	2 cut(s)	892, 1278
BbvI	GCAGC	4 cut(s)	175, 653, 656, 659
BccI	CCATC	3 cut(s)	337, 911, 1134
BceAI	ACGGC	3 cut(s)	221, 247, 248
BciT130I	CCWGG	1 cut(s)	160
BcnI	CCSGG	3 cut(s)	189, 207, 353
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	3 cut(s)	57, 405, 1047
BfmI	CTRYAG	2 cut(s)	1267, 1341
BfoI	RGCGCY	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	1199
BisI	GCNGC	8 cut(s)	77, 95, 98, 164, 179, 642, 645, 648
BlsI	GCNGC	8 cut(s)	78, 96, 99, 165, 180, 643, 646, 649
Bme1390I	CCNGG	4 cut(s)	160, 189, 207, 353
Bme18I	GGWCC	4 cut(s)	89, 315, 674, 1001
BmgBI	CACGTC	2 cut(s)	121, 256
BmgT120I	GGNCC	8 cut(s)	89, 133, 134, 149, 315, 350, 674, 1001
BmiI	GGNNCC	5 cut(s)	135, 235, 317, 945, 1337
BmrFI	CCNGG	4 cut(s)	160, 189, 207, 353
BmrI	ACTGGG	3 cut(s)	140, 850, 1188
BmsI	GCATC	7 cut(s)	622, 802, 1007, 1066, 1267, 1374, 1388
BmuI	ACTGGG	3 cut(s)	140, 850, 1188
BpiI	GAAGAC	1 cut(s)	929
BpuEI	CTTGAG	2 cut(s)	260, 1140
BpuMI	CCSGG	3 cut(s)	189, 207, 353
Bsa29I	ATCGAT	2 cut(s)	449, 1382
BsaAI	YACGTR	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	158, 187, 206, 864
BsaWI	WCCGGW	1 cut(s)	1134
Bse118I	RCCGGY	2 cut(s)	973, 1171
Bse1I	ACTGG	6 cut(s)	135, 596, 614, 845, 1183, 1337
BseBI	CCWGG	1 cut(s)	160
BseCI	ATCGAT	2 cut(s)	449, 1382
BseDI	CCNNGG	4 cut(s)	158, 187, 206, 864
BseGI	GGATG	5 cut(s)	102, 523, 637, 1022, 1222
BseMII	CTCAG	1 cut(s)	962
BseNI	ACTGG	6 cut(s)	135, 596, 614, 845, 1183, 1337
BseRI	GAGGAG	4 cut(s)	57, 158, 882, 936
BseSI	GKGCMC	1 cut(s)	137
BseXI	GCAGC	4 cut(s)	175, 653, 656, 659
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	7 cut(s)	135, 150, 333, 351, 403, 714, 1204
BshNI	GGYRCC	2 cut(s)	233, 1335
BshVI	ATCGAT	2 cut(s)	449, 1382
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	892, 1278
BsiSI	CCGG	7 cut(s)	87, 189, 206, 353, 974, 1135, 1172
BslFI	GGGAC	2 cut(s)	301, 1232
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	2 cut(s)	301, 1232
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	7 cut(s)	135, 150, 333, 351, 403, 714, 1204
Bsp120I	GGGCCC	1 cut(s)	133
Bsp1286I	GDGCHC	3 cut(s)	137, 892, 1278
Bsp1407I	TGTACA	1 cut(s)	1219
Bsp143I	GATC	1 cut(s)	1315
BspANI	GGCC	7 cut(s)	135, 150, 333, 351, 403, 714, 1204
BspCNI	CTCAG	1 cut(s)	961
BspDI	ATCGAT	2 cut(s)	449, 1382
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	5 cut(s)	135, 235, 317, 945, 1337
BspMI	ACCTGC	1 cut(s)	1199
BspPI	GGATC	1 cut(s)	1323
BspT107I	GGYRCC	2 cut(s)	233, 1335
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	2 cut(s)	973, 1171
BsrGI	TGTACA	1 cut(s)	1219
BsrI	ACTGG	6 cut(s)	135, 596, 614, 845, 1183, 1337
BssAI	RCCGGY	2 cut(s)	973, 1171
BssECI	CCNNGG	4 cut(s)	158, 187, 206, 864
BssMI	GATC	1 cut(s)	1315
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	864
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	743, 1268, 1349
Bst6I	CTCTTC	1 cut(s)	756
BstACI	GRCGYC	1 cut(s)	234
BstAUI	TGTACA	1 cut(s)	1219
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	3 cut(s)	1094, 1173, 1206
BstDEI	CTNAG	3 cut(s)	948, 1296, 1403
BstENI	CCTNNNNNAGG	1 cut(s)	951
BstF5I	GGATG	5 cut(s)	102, 523, 637, 1022, 1222
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	1318
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	1 cut(s)	1315
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	580, 641, 647
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	819
BstSCI	CCNGG	4 cut(s)	158, 187, 205, 351
BstSFI	CTRYAG	2 cut(s)	1267, 1341
BstSLI	GKGCMC	1 cut(s)	137
BstV1I	GCAGC	4 cut(s)	175, 653, 656, 659
BstV2I	GAAGAC	1 cut(s)	929
Bsu15I	ATCGAT	2 cut(s)	449, 1382
BsuRI	GGCC	7 cut(s)	135, 150, 333, 351, 403, 714, 1204
BsuTUI	ATCGAT	2 cut(s)	449, 1382
BtrI	CACGTC	2 cut(s)	121, 256
BtsCI	GGATG	5 cut(s)	102, 523, 637, 1022, 1222
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	4 cut(s)	715, 748, 768, 1264
BveI	ACCTGC	1 cut(s)	1199
Cac8I	GCNNGC	3 cut(s)	1094, 1173, 1206
CciI	TCATGA	1 cut(s)	897
CfoI	GCGC	1 cut(s)	236
Cfr10I	RCCGGY	2 cut(s)	973, 1171
Cfr13I	GGNCC	8 cut(s)	89, 133, 134, 149, 315, 350, 674, 1001
ClaI	ATCGAT	2 cut(s)	449, 1382
CpoI	CGGWCCG	1 cut(s)	89
Csp6I	GTAC	6 cut(s)	440, 505, 550, 838, 1220, 1280
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	8 cut(s)	290, 628, 795, 816, 898, 1023, 1396, 1417
CviQI	GTAC	6 cut(s)	440, 505, 550, 838, 1220, 1280
DdeI	CTNAG	3 cut(s)	948, 1296, 1403
DinI	GGCGCC	1 cut(s)	235
DpnI	GATC	1 cut(s)	1317
DpnII	GATC	1 cut(s)	1315
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Ecl136II	GAGCTC	1 cut(s)	1276
Eco130I	CCWWGG	1 cut(s)	864
Eco147I	AGGCCT	2 cut(s)	333, 403
Eco24I	GRGCYC	2 cut(s)	137, 1278
Eco32I	GATATC	1 cut(s)	1363
Eco47I	GGWCC	4 cut(s)	89, 315, 674, 1001
Eco53kI	GAGCTC	1 cut(s)	1276
Eco57I	CTGAAG	1 cut(s)	1101
Eco72I	CACGTG	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	1276
EcoNI	CCTNNNNNAGG	1 cut(s)	951
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	158
EcoRV	GATATC	1 cut(s)	1363
EcoT14I	CCWWGG	1 cut(s)	864
EcoT22I	ATGCAT	2 cut(s)	637, 817
EcoT38I	GRGCYC	2 cut(s)	137, 1278
EgeI	GGCGCC	1 cut(s)	235
EheI	GGCGCC	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	8 cut(s)	293, 631, 798, 819, 901, 1026, 1399, 1420
FalI	AAGNNNNNCTT	6 cut(s)	269, 301, 863, 895, 1236, 1268
FaqI	GGGAC	2 cut(s)	301, 1232
FatI	CATG	8 cut(s)	289, 627, 794, 815, 897, 1022, 1395, 1416
FblI	GTMKAC	2 cut(s)	196, 1344
Fnu4HI	GCNGC	8 cut(s)	77, 95, 98, 164, 179, 642, 645, 648
FokI	GGATG	5 cut(s)	89, 530, 644, 1029, 1229
FriOI	GRGCYC	2 cut(s)	137, 1278
Fsp4HI	GCNGC	8 cut(s)	77, 95, 98, 164, 179, 642, 645, 648
FspBI	CTAG	3 cut(s)	57, 405, 1047
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	8 cut(s)	77, 95, 98, 164, 179, 642, 645, 648
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	7 cut(s)	135, 150, 333, 351, 403, 714, 1204
HapII	CCGG	7 cut(s)	87, 189, 206, 353, 974, 1135, 1172
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	8 cut(s)	293, 631, 798, 819, 901, 1026, 1399, 1420
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HindIII	AAGCTT	2 cut(s)	963, 1083
HinfI	GANTC	5 cut(s)	12, 356, 477, 557, 1411
HpaII	CCGG	7 cut(s)	87, 189, 206, 353, 974, 1135, 1172
HphI	GGTGA	4 cut(s)	27, 250, 1118, 1124
Hpy166II	GTNNAC	3 cut(s)	197, 1132, 1345
Hpy188I	TCNGA	5 cut(s)	107, 342, 834, 1320, 1327
Hpy188III	TCNNGA	5 cut(s)	243, 898, 911, 954, 1214
Hpy8I	GTNNAC	3 cut(s)	197, 1132, 1345
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4III	ACNGT	3 cut(s)	743, 1268, 1349
HpyCH4IV	ACGT	4 cut(s)	30, 120, 255, 385
HpyCH4V	TGCA	9 cut(s)	428, 455, 486, 535, 635, 757, 798, 815, 1258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	580, 641, 647
HpyF3I	CTNAG	3 cut(s)	948, 1296, 1403
HpySE526I	ACGT	4 cut(s)	30, 120, 255, 385
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	8 cut(s)	293, 631, 798, 819, 901, 1026, 1399, 1420
HspAI	GCGC	1 cut(s)	234
KasI	GGCGCC	1 cut(s)	233
KroI	GCCGGC	1 cut(s)	1171
KroNI	GCCGGC	1 cut(s)	1173
Kzo9I	GATC	1 cut(s)	1315
LmnI	GCTCC	4 cut(s)	171, 895, 949, 1068
Lsp1109I	GCAGC	4 cut(s)	175, 653, 656, 659
LweI	GCATC	7 cut(s)	622, 802, 1007, 1066, 1267, 1374, 1388
MaeI	CTAG	3 cut(s)	57, 405, 1047
MaeII	ACGT	4 cut(s)	30, 120, 255, 385
MaeIII	GTNAC	4 cut(s)	16, 33, 256, 1106
MalI	GATC	1 cut(s)	1317
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	1315
MboII	GAAGA	6 cut(s)	21, 223, 226, 741, 743, 934
MfeI	CAATTG	2 cut(s)	360, 1098
MhlI	GDGCHC	3 cut(s)	137, 892, 1278
MluCI	AATT	7 cut(s)	360, 465, 590, 680, 882, 1031, 1098
Mly113I	GGCGCC	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	1388
Mph1103I	ATGCAT	2 cut(s)	637, 817
MroNI	GCCGGC	1 cut(s)	1171
MseI	TTAA	2 cut(s)	722, 881
MslI	CAYNNNNRTG	2 cut(s)	107, 902
MspI	CCGG	7 cut(s)	87, 189, 206, 353, 974, 1135, 1172
MspR9I	CCNGG	4 cut(s)	160, 189, 207, 353
MunI	CAATTG	2 cut(s)	360, 1098
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	580, 641, 647
NaeI	GCCGGC	1 cut(s)	1173
NarI	GGCGCC	1 cut(s)	234
NciI	CCSGG	3 cut(s)	189, 207, 353
NdeII	GATC	1 cut(s)	1315
NgoMIV	GCCGGC	1 cut(s)	1171
NlaIII	CATG	8 cut(s)	293, 631, 798, 819, 901, 1026, 1399, 1420
NlaIV	GGNNCC	5 cut(s)	135, 235, 317, 945, 1337
NmuCI	GTSAC	3 cut(s)	33, 256, 1106
NsiI	ATGCAT	2 cut(s)	637, 817
NspI	RCATGY	1 cut(s)	819
PagI	TCATGA	1 cut(s)	897
PceI	AGGCCT	2 cut(s)	333, 403
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	1 cut(s)	757
PdiI	GCCGGC	1 cut(s)	1173
PfeI	GAWTC	4 cut(s)	12, 356, 477, 1411
PkrI	GCNGC	8 cut(s)	78, 96, 99, 165, 180, 643, 646, 649
PleI	GAGTC	1 cut(s)	551
PluTI	GGCGCC	1 cut(s)	237
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	551
Ppu21I	YACGTR	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	674
Psp124BI	GAGCTC	1 cut(s)	1278
Psp5II	RGGWCCY	1 cut(s)	674
Psp6I	CCWGG	1 cut(s)	158
PspCI	CACGTG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	5 cut(s)	135, 235, 317, 945, 1337
PspOMI	GGGCCC	1 cut(s)	133
PspPI	GGNCC	8 cut(s)	89, 133, 134, 149, 315, 350, 674, 1001
PspPPI	RGGWCCY	1 cut(s)	674
RsaI	GTAC	6 cut(s)	441, 506, 551, 839, 1221, 1281
RsaNI	GTAC	6 cut(s)	440, 505, 550, 838, 1220, 1280
RseI	CAYNNNNRTG	2 cut(s)	107, 902
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	1278
SalI	GTCGAC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	722, 881
SatI	GCNGC	8 cut(s)	77, 95, 98, 164, 179, 642, 645, 648
Sau3AI	GATC	1 cut(s)	1315
Sau96I	GGNCC	8 cut(s)	89, 133, 134, 149, 315, 350, 674, 1001
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	4 cut(s)	160, 189, 207, 353
SduI	GDGCHC	3 cut(s)	137, 892, 1278
SfaNI	GCATC	7 cut(s)	622, 802, 1007, 1066, 1267, 1374, 1388
SfcI	CTRYAG	2 cut(s)	1267, 1341
SfoI	GGCGCC	1 cut(s)	235
SinI	GGWCC	4 cut(s)	89, 315, 674, 1001
SmiMI	CAYNNNNRTG	2 cut(s)	107, 902
SmlI	CTYRAG	2 cut(s)	275, 1155
SmoI	CTYRAG	2 cut(s)	275, 1155
Sse9I	AATT	7 cut(s)	360, 465, 590, 680, 882, 1031, 1098
SseBI	AGGCCT	2 cut(s)	333, 403
SspDI	GGCGCC	1 cut(s)	233
SspI	AATATT	1 cut(s)	1291
SspMI	CTAG	3 cut(s)	57, 405, 1047
SstI	GAGCTC	1 cut(s)	1278
StuI	AGGCCT	2 cut(s)	333, 403
StyD4I	CCNGG	4 cut(s)	158, 187, 205, 351
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	3 cut(s)	743, 1268, 1349
TaiI	ACGT	4 cut(s)	33, 123, 258, 388
TaqI	TCGA	6 cut(s)	113, 196, 449, 480, 1161, 1382
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	7 cut(s)	360, 465, 590, 680, 882, 1031, 1098
TatI	WGTACW	2 cut(s)	549, 1219
TauI	GCSGC	4 cut(s)	79, 97, 100, 181
TfiI	GAWTC	4 cut(s)	12, 356, 477, 1411
Tru1I	TTAA	2 cut(s)	722, 881
Tru9I	TTAA	2 cut(s)	722, 881
TscAI	CASTG	4 cut(s)	715, 748, 775, 1271
TseFI	GTSAC	3 cut(s)	33, 256, 1106
TseI	GCWGC	4 cut(s)	163, 641, 644, 647
Tsp45I	GTSAC	3 cut(s)	33, 256, 1106
TspDTI	ATGAA	5 cut(s)	677, 684, 914, 1061, 1412
TspGWI	ACGGA	1 cut(s)	1055
TspRI	CASTG	4 cut(s)	715, 748, 775, 1271
VpaK11BI	GGWCC	4 cut(s)	89, 315, 674, 1001
XagI	CCTNNNNNAGG	1 cut(s)	951
XapI	RAATTY	1 cut(s)	465
XceI	RCATGY	1 cut(s)	819
XmiI	GTMKAC	2 cut(s)	196, 1344
XspI	CTAG	3 cut(s)	57, 405, 1047
Zsp2I	ATGCAT	2 cut(s)	637, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.