Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006055

Physical Location & Seq

Genomic Coordinates Forward (+)

44669059 .. 44672196

Gene Structure 3138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG312900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCTGAATTTCTTGAAGGAGTTTGAGACAAAGGTTGGGATCAAGATCACATGTTCACAAGAGACTGAACCCCTTGGCACTGCTGGTCCTCTGGCTCTTGCTAGGGACAAACTGATAGACGAATCTGGTGAACCCTTCTTTGTCCTTAACAGTGATGTGATCAGTGATTACCCACTAAAAGAAATGATTGAATTCCATAAATCCCATGGAGGAGAGGCTTCTATAATGGTGACCAAGGTGGATGAGCCATCAAAATATGGAGTGGTGGTTATGGAAGAGTCTACAGGGAAAGTGGAGAAATTTGTGGAGAAACCAAAATTGTTTGTTGGCAACAAAATCAATGCTGGAATATATTTGTTGAATCCCGAAGTTCTTGATCGTATTCAACTGAGACCAACCTCAATTGAGAAAGAGGTTTTCCCAAAGATTGCATCAGAGAATAAGCTCTTTGCAATGGTCCTTCCTGGGTTTTGGATGGACATTGGACAGCCAAAGGATTATATCACAGGCCTGAGACTCTACTTAGACTCGTTGAGGAAGAAGTCTTCATCTAAGTTGTCCCATGGCACCCACATCGTGGGAAATGTTCTGGTAGATGAGACTGCTACAATTGGTGAGGGGTGCCTGATTGGACCAGATGTTGCAATTGGTCCCGGTTGTGTGGTTGAATCAGGAGTTAGGCTTTCTCGCTGCACGGTAATGCGCGGTGTTCGGATCAAGAAGCATGCTTGCATTTCCAGTAGTATCATTGGATGGCACTCCACTGTCGGGCAATGGGCTCGTGTGGAGAACATGACTATCCTTGGTGAAGATGTTCACGTAAGTGATGAAATCTACAGCAATGGAGGTGTGGTTTTGCCTCACAAAGAAATCAAGTCGAGCATTTTGAAGCCAGAGATTGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004475 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005996 GO:0006073 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008905 GO:0009058 GO:0009059 GO:0009108 GO:0009110 GO:0009250 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016051 GO:0016053 GO:0016740 GO:0016772 GO:0016779 GO:0019752 GO:0019852 GO:0019853 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042364 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0046394 GO:0046677 GO:0050896 GO:0051186 GO:0051188 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060359 GO:0070568 GO:0071704 GO:0098542 GO:1901576 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110

Pfam Domains

Protein Families

Hexapep NTP_transferase

Protein Analysis

302

Amino Acids

33.21

Weight (kDa)

6.1

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	3 - 174	6.1e-38	Nucleotidyl transferase
LbH_EIF2B	PF25084	180 - 278	1.6e-13	EIF2B subunit epsilon LbH domain
GMPPB_C	PF25087	192 - 301	8.1e-44	GMPPB C-terminal domain
Hexapep	PF00132	202 - 235	2.1e-06	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39770 AT2G39770 AT2G39770 AT3G55590
fragaria_vesca	FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380
malus_domestica	MD01G1139900.v1.1 MD07G1204200.v1.1
prunus_persica	Prupe.2G240500_v2.0.a1
pyrus_communis	pycom01g16040 pycom07g19080
rosa_chinensis	RchiOBHm_Chr1g0368511
rosa_laevigata	RLG00000027207
rosa_multiflora	Rmu_co8389653.1_g000001 Rmu_sc0006908.1_g000002 Rmu_sc0011394.1_g000010
rosa_roxburghii	Rroxscaffold_4G00288480
rosa_rugosa	Rorug01G0342400 Rorug01G0342500 Rorug01G0342500
rosa_samantha	Rh1AG349800 Rh1BG312900 Rh1CG327700 Rh1DG344400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	566, 621
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	705
AciI	CCGC	1 cut(s)	705
AclWI	GGATC	2 cut(s)	47, 722
AcsI	RAATTY	3 cut(s)	7, 191, 299
AdeI	CACNNNGTG	1 cut(s)	577
AfiI	CCNNNNNNNGG	2 cut(s)	577, 768
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	6 cut(s)	16, 191, 361, 386, 668, 889
AjnI	CCWGG	1 cut(s)	463
AleI	CACNNNNGTG	1 cut(s)	822
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw26I	GTCTC	5 cut(s)	20, 56, 385, 508, 593
AlwI	GGATC	2 cut(s)	47, 722
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	1 cut(s)	690
ApoI	RAATTY	3 cut(s)	7, 191, 299
Asp700I	GAANNNNTTC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	4 cut(s)	86, 457, 632, 650
AsuC2I	CCSGG	1 cut(s)	654
AsuHPI	GGTGA	4 cut(s)	140, 241, 626, 818
AvaII	GGWCC	4 cut(s)	86, 457, 632, 650
BanI	GGYRCC	2 cut(s)	566, 621
BanII	GRGCYC	1 cut(s)	781
BauI	CACGAG	1 cut(s)	780
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	677
BccI	CCATC	3 cut(s)	256, 469, 747
BcgI	CGANNNNNNTGC	4 cut(s)	556, 590, 761, 795
BciT130I	CCWGG	1 cut(s)	465
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	654
BcoDI	GTCTC	5 cut(s)	20, 56, 385, 508, 593
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	2 cut(s)	282, 835
BisI	GCNGC	1 cut(s)	691
BlsI	GCNGC	1 cut(s)	692
Bme1390I	CCNGG	2 cut(s)	465, 654
Bme18I	GGWCC	4 cut(s)	86, 457, 632, 650
BmgT120I	GGNCC	4 cut(s)	86, 457, 632, 650
BmiI	GGNNCC	3 cut(s)	568, 623, 652
BmrFI	CCNGG	2 cut(s)	465, 654
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	820
BsaBI	GATNNNNATC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	385
BsaJI	CCNNGG	6 cut(s)	73, 205, 234, 464, 562, 802
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 837, 867
Bsc4I	CCNNNNNNNGG	2 cut(s)	577, 768
Bse1I	ACTGG	1 cut(s)	738
Bse3DI	GCAATG	3 cut(s)	459, 779, 847
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	6 cut(s)	73, 205, 234, 464, 562, 802
BseGI	GGATG	3 cut(s)	247, 480, 758
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	577, 768
BseMI	GCAATG	3 cut(s)	459, 779, 847
BseMII	CTCAG	2 cut(s)	380, 503
BseNI	ACTGG	1 cut(s)	738
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	676
Bsh1236I	CGCG	1 cut(s)	705
BshFI	GGCC	1 cut(s)	510
BshNI	GGYRCC	2 cut(s)	566, 621
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	3 cut(s)	119, 544, 636
BslI	CCNNNNNNNGG	2 cut(s)	577, 768
BsmAI	GTCTC	5 cut(s)	20, 56, 385, 508, 593
BsmFI	GGGAC	3 cut(s)	119, 544, 636
BsnI	GGCC	1 cut(s)	510
Bso31I	GGTCTC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp143I	GATC	5 cut(s)	39, 45, 159, 376, 714
Bsp19I	CCATGG	2 cut(s)	205, 562
BspACI	CCGC	1 cut(s)	705
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	381, 504
BspFNI	CGCG	1 cut(s)	705
BspLI	GGNNCC	3 cut(s)	568, 623, 652
BspPI	GGATC	2 cut(s)	47, 722
BspT107I	GGYRCC	2 cut(s)	566, 621
BspTNI	GGTCTC	1 cut(s)	385
BsrDI	GCAATG	3 cut(s)	459, 779, 847
BsrI	ACTGG	1 cut(s)	738
BssECI	CCNNGG	6 cut(s)	73, 205, 234, 464, 562, 802
BssMI	GATC	5 cut(s)	39, 45, 159, 376, 714
BssSI	CACGAG	1 cut(s)	780
BssT1I	CCWWGG	5 cut(s)	73, 205, 234, 562, 802
Bst2BI	CACGAG	1 cut(s)	780
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	152, 697, 766
Bst6I	CTCTTC	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	820
BstC8I	GCNNGC	2 cut(s)	726, 730
BstDEI	CTNAG	4 cut(s)	389, 512, 523, 552
BstDSI	CCRYGG	2 cut(s)	205, 562
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	247, 480, 758
BstFNI	CGCG	1 cut(s)	705
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	5 cut(s)	42, 48, 162, 379, 717
BstMAI	GTCTC	5 cut(s)	20, 56, 385, 508, 593
BstMBI	GATC	5 cut(s)	39, 45, 159, 376, 714
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	2 cut(s)	54, 728
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	463, 652
BstSFI	CTRYAG	2 cut(s)	282, 835
BstUI	CGCG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	677
BstV2I	GAAGAC	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	510
BtgI	CCRYGG	2 cut(s)	205, 562
BtsCI	GGATG	3 cut(s)	247, 480, 758
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	4 cut(s)	78, 157, 169, 762
Cac8I	GCNNGC	2 cut(s)	726, 730
CfoI	GCGC	1 cut(s)	705
Cfr13I	GGNCC	4 cut(s)	86, 457, 632, 650
CviAII	CATG	5 cut(s)	51, 206, 563, 725, 793
CviJI	RGCY	9 cut(s)	95, 218, 247, 445, 490, 510, 682, 779, 892
CviKI_1	RGCY	9 cut(s)	95, 218, 247, 445, 490, 510, 682, 779, 892
DdeI	CTNAG	4 cut(s)	389, 512, 523, 552
DpnI	GATC	5 cut(s)	41, 47, 161, 378, 716
DpnII	GATC	5 cut(s)	39, 45, 159, 376, 714
DraIII	CACNNNGTG	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	5 cut(s)	73, 205, 234, 562, 802
Eco147I	AGGCCT	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	385
Eco47I	GGWCC	4 cut(s)	86, 457, 632, 650
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	5 cut(s)	73, 205, 234, 562, 802
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	5 cut(s)	73, 205, 234, 562, 802
FaeI	CATG	5 cut(s)	54, 209, 566, 728, 796
FaqI	GGGAC	3 cut(s)	119, 544, 636
FatI	CATG	5 cut(s)	50, 205, 562, 724, 792
FbaI	TGATCA	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	691
FokI	GGATG	3 cut(s)	254, 487, 765
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	1 cut(s)	691
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	1 cut(s)	691
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	1 cut(s)	654
HhaI	GCGC	1 cut(s)	705
Hin1II	CATG	5 cut(s)	54, 209, 566, 728, 796
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HinfI	GANTC	6 cut(s)	122, 278, 361, 516, 527, 668
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	4 cut(s)	140, 241, 626, 818
Hpy166II	GTNNAC	4 cut(s)	56, 131, 282, 817
Hpy188I	TCNGA	2 cut(s)	436, 714
Hpy188III	TCNNGA	6 cut(s)	13, 43, 365, 374, 672, 718
Hpy8I	GTNNAC	4 cut(s)	56, 131, 282, 817
HpyAV	CCTTC	3 cut(s)	10, 145, 470
HpyCH4III	ACNGT	3 cut(s)	152, 697, 766
HpyCH4IV	ACGT	1 cut(s)	819
HpyCH4V	TGCA	5 cut(s)	431, 452, 644, 693, 732
HpyF3I	CTNAG	4 cut(s)	389, 512, 523, 552
HpySE526I	ACGT	1 cut(s)	819
Hsp92II	CATG	5 cut(s)	54, 209, 566, 728, 796
HspAI	GCGC	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	39, 45, 159, 376, 714
Lsp1109I	GCAGC	1 cut(s)	677
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	5 cut(s)	41, 47, 161, 378, 716
MboI	GATC	5 cut(s)	39, 45, 159, 376, 714
MboII	GAAGA	4 cut(s)	287, 537, 550, 821
MfeI	CAATTG	3 cut(s)	402, 609, 645
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	7 cut(s)	7, 191, 299, 317, 402, 609, 645
MlyI	GAGTC	3 cut(s)	287, 510, 521
MnlI	CCTC	9 cut(s)	99, 203, 208, 406, 409, 528, 610, 839, 870
MroXI	GAANNNNTTC	1 cut(s)	813
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	2 cut(s)	698, 822
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	2 cut(s)	465, 654
MunI	CAATTG	3 cut(s)	402, 609, 645
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	705
NciI	CCSGG	1 cut(s)	654
NcoI	CCATGG	2 cut(s)	205, 562
NdeII	GATC	5 cut(s)	39, 45, 159, 376, 714
NlaIII	CATG	5 cut(s)	54, 209, 566, 728, 796
NlaIV	GGNNCC	3 cut(s)	568, 623, 652
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	2 cut(s)	54, 728
OliI	CACNNNNGTG	1 cut(s)	822
PaeI	GCATGC	1 cut(s)	728
PceI	AGGCCT	1 cut(s)	510
PciI	ACATGT	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	3 cut(s)	122, 361, 668
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	1 cut(s)	692
PleI	GAGTC	3 cut(s)	286, 510, 521
PpsI	GAGTC	3 cut(s)	286, 510, 521
Ppu21I	YACGTR	1 cut(s)	820
PscI	ACATGT	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	463
PspEI	GGTNACC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	3 cut(s)	568, 623, 652
PspPI	GGNCC	4 cut(s)	86, 457, 632, 650
RseI	CAYNNNNRTG	2 cut(s)	698, 822
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	691
Sau3AI	GATC	5 cut(s)	39, 45, 159, 376, 714
Sau96I	GGNCC	4 cut(s)	86, 457, 632, 650
SchI	GAGTC	3 cut(s)	287, 510, 521
ScrFI	CCNGG	2 cut(s)	465, 654
SduI	GDGCHC	1 cut(s)	781
SetI	ASST	7 cut(s)	36, 240, 401, 417, 447, 822, 850
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	2 cut(s)	282, 835
SinI	GGWCC	4 cut(s)	86, 457, 632, 650
SmiMI	CAYNNNNRTG	2 cut(s)	698, 822
SphI	GCATGC	1 cut(s)	728
Sse9I	AATT	7 cut(s)	7, 191, 299, 317, 402, 609, 645
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	1 cut(s)	705
SspMI	CTAG	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	463, 652
StyI	CCWWGG	5 cut(s)	73, 205, 234, 562, 802
TaaI	ACNGT	3 cut(s)	152, 697, 766
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	1 cut(s)	878
TasI	AATT	7 cut(s)	7, 191, 299, 317, 402, 609, 645
TfiI	GAWTC	3 cut(s)	122, 361, 668
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	4 cut(s)	85, 157, 169, 769
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	690
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	537, 843
TspRI	CASTG	4 cut(s)	85, 157, 169, 769
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	4 cut(s)	86, 457, 632, 650
XapI	RAATTY	3 cut(s)	7, 191, 299
XceI	RCATGY	2 cut(s)	54, 728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.